genome.fa.s17.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  26  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6936980--6937110	69	1.9	70	81	10	162	62	1	2	33	1.17
6937067--6937109	19	2.3	19	84	8	52	60	2	2	34	1.22
6937347--6937426	29	2.7	30	80	5	90	41	1	1	56	1.15
6937357--6937395	10	4.1	9	83	9	51	46	0	0	53	1.00
6949761--6949904	72	2.0	72	97	0	270	41	9	18	30	1.82
6950596--6950636	21	2.0	21	90	4	66	41	4	14	39	1.67
6953828--6953878	19	2.8	18	80	8	59	64	1	5	27	1.27
6953823--6953884	25	2.5	24	80	10	63	61	3	4	30	1.33
6956220--6956762	44	11.8	44	66	15	204	31	20	19	28	1.97
6956227--6956410	94	2.0	94	84	2	244	34	18	18	28	1.95
6956360--6956598	94	2.5	94	80	9	281	31	21	19	27	1.97
6956452--6956768	138	2.3	138	84	2	386	29	19	22	28	1.98
6956753--6956864	50	2.2	50	85	4	163	31	14	21	33	1.93
6956753--6956882	50	2.6	50	78	7	122	33	14	21	30	1.93
6958118--6958157	21	1.9	21	85	10	55	20	20	12	47	1.81
6958317--6958357	16	2.5	17	76	11	50	31	9	2	56	1.45
6968735--6968769	18	1.9	18	94	0	61	65	14	5	14	1.44
6971811--6971846	4	8.8	4	87	6	54	75	2	0	22	0.94
6971998--6972054	30	1.9	30	89	7	89	57	3	1	36	1.26
6972028--6972078	24	2.2	23	82	10	59	60	7	0	31	1.25
6972368--6972398	3	10.0	3	93	6	53	67	0	0	32	0.91
6972368--6972399	13	2.5	13	95	5	57	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6972672--6972769	21	4.7	21	86	8	112	41	14	8	35	1.75
6975320--6975365	22	2.1	22	100	0	92	39	4	13	43	1.63
6980103--6980161	29	2.0	29	90	0	91	20	8	35	35	1.83
6984845--6984890	9	5.2	9	77	15	51	23	28	2	45	1.65
6991489--6991595	49	2.2	49	81	3	126	25	14	30	29	1.94
6992137--6992243	49	2.2	48	83	6	135	30	29	15	23	1.96
7002087--7002111	13	1.9	13	100	0	50	8	0	24	68	1.16
7003858--7004003	41	3.6	40	77	12	120	27	20	24	27	1.99
7004676--7004710	17	2.1	17	89	10	54	40	0	0	60	0.97
7010809--7010837	14	2.1	14	100	0	58	44	6	13	34	1.71
7024757--7024808	26	2.0	26	92	0	86	28	34	21	15	1.94
7024902--7025106	104	2.0	103	91	2	331	32	30	19	18	1.95
7025435--7025498	30	2.2	29	81	10	76	29	28	6	35	1.82
7025442--7025498	30	1.9	30	85	3	80	29	24	7	38	1.82
7032368--7032518	71	2.1	72	90	2	234	30	29	17	22	1.96
7032438--7032660	104	2.2	103	92	2	367	31	31	18	17	1.95
7032988--7033051	30	2.2	29	81	10	76	29	28	6	35	1.82
7032995--7033051	30	1.9	30	85	3	80	29	24	7	38	1.82
7047660--7047779	60	2.0	60	95	0	213	25	16	14	43	1.86
7057466--7057506	13	3.0	13	89	7	55	19	2	7	70	1.22
7058681--7058717	15	2.5	15	90	0	56	29	13	5	51	1.63
7059028--7059061	2	17.0	2	87	0	50	44	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7059921--7059995	37	2.0	37	85	10	100	42	0	0	57	0.98
7059919--7060005	21	4.4	19	76	17	81	44	0	0	55	0.99
7060057--7060165	13	9.2	13	69	24	53	38	0	2	57	1.19
7060080--7060123	19	2.2	21	92	8	74	38	0	0	61	0.96
7060103--7060157	25	2.0	29	86	13	82	30	0	1	67	1.01
7060103--7060157	28	2.1	28	90	10	89	30	0	1	67	1.01
7060103--7060157	13	4.1	14	82	17	73	30	0	1	67	1.01
7060082--7060166	21	3.5	24	79	16	79	35	0	2	62	1.08
7068348--7068401	10	5.7	10	74	10	51	64	0	3	31	1.11
7068348--7068400	18	2.8	19	83	11	65	64	0	3	32	1.12
7068345--7068400	9	6.2	9	76	13	53	64	0	3	32	1.11
7068359--7068399	19	2.2	19	91	4	66	60	0	4	34	1.18
7068682--7068773	37	2.4	38	80	10	107	32	2	5	59	1.32
7071917--7072003	9	9.3	9	73	12	50	42	27	9	20	1.82
7071962--7072004	11	4.2	11	82	14	56	48	25	6	18	1.73
7071916--7072000	20	4.5	19	77	16	88	41	28	9	21	1.84
7072880--7072941	26	2.3	27	91	5	108	14	32	25	27	1.95
7073012--7073083	25	2.7	27	75	10	78	62	1	0	36	1.04
7074272--7074331	26	2.3	26	97	0	111	26	11	16	45	1.82
7079775--7079864	23	4.0	23	76	11	87	21	24	18	35	1.96
7079807--7079860	22	2.4	23	84	3	65	20	27	22	29	1.98
7080783--7080807	13	1.9	13	100	0	50	48	0	16	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7084038--7084063	11	2.4	11	100	0	52	38	7	0	53	1.30
7084065--7084098	17	2.0	17	94	0	59	50	0	0	50	1.00
7084086--7084175	11	8.5	11	73	20	77	44	1	0	54	1.07
7084133--7084182	13	4.3	13	76	23	58	46	0	0	54	1.00
7084093--7084169	40	1.9	40	89	0	118	38	1	0	59	1.06
7084082--7084182	22	4.7	23	73	17	92	42	0	0	56	1.06
7084063--7084182	22	5.8	22	70	20	82	43	0	0	55	1.05
7086746--7086801	23	2.5	22	75	18	60	46	10	1	41	1.49
7086806--7086835	15	2.0	15	93	0	51	33	6	23	36	1.81
7101859--7101890	15	2.1	15	100	0	64	37	12	0	50	1.41
7101979--7102040	30	2.1	30	96	0	115	43	3	27	25	1.70
7109644--7109707	20	3.3	20	70	12	71	43	15	6	34	1.72
7109664--7109724	17	3.4	17	68	12	50	50	13	3	32	1.57
7109617--7109724	37	2.9	37	95	1	189	49	13	4	32	1.63
7110857--7110900	20	2.2	20	84	8	54	6	13	0	79	0.92
7119765--7119791	3	9.0	3	100	0	54	66	0	33	0	0.92
7126976--7127010	2	17.5	2	100	0	70	0	48	0	51	1.00
7133623--7133657	17	2.1	17	89	10	54	60	0	0	40	0.97
7145012--7145037	8	3.2	8	100	0	52	26	0	23	50	1.50
7145486--7145545	31	2.0	30	83	3	75	55	15	5	25	1.60
7145575--7145616	22	2.0	21	86	9	59	54	14	14	16	1.71
7150322--7150496	41	4.3	41	84	8	207	27	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7160120--7160201	24	3.2	24	62	18	56	45	17	10	26	1.81
7160119--7160227	54	2.0	54	98	0	209	40	16	12	30	1.86
7161030--7161087	30	1.9	30	86	6	82	25	5	15	53	1.63
7176296--7176326	15	2.1	14	94	5	53	22	12	19	45	1.84
7176663--7176705	21	2.0	21	90	0	68	32	0	6	60	1.23
7182749--7182778	14	2.1	14	100	0	60	36	6	23	33	1.81
7191261--7191300	14	2.9	14	84	0	62	42	0	7	50	1.30
7202582--7202678	48	2.0	48	89	0	149	40	19	5	35	1.74
7205247--7205271	5	5.0	5	100	0	50	20	20	20	40	1.92
7208686--7208729	22	2.1	21	83	8	54	22	4	6	65	1.35
7208857--7208896	14	2.9	15	82	17	52	40	0	0	60	0.97
7208843--7208921	34	2.3	35	80	8	90	40	0	2	56	1.12
7213153--7213204	26	2.0	26	88	0	77	25	19	21	34	1.96
7226295--7226359	26	2.5	26	82	5	87	35	12	10	41	1.78
7226988--7227090	42	2.5	42	82	3	127	31	18	22	28	1.97
7228321--7228664	124	2.8	124	94	0	580	28	14	22	35	1.93
7231704--7231999	37	8.0	37	97	0	547	50	2	8	38	1.47
7231712--7231972	9	28.5	8	66	21	81	50	2	8	37	1.47
7233393--7233448	22	2.5	22	94	2	94	41	0	30	28	1.57
7233433--7233465	10	3.0	11	86	13	50	45	0	36	18	1.49
7235543--7235610	33	2.1	33	91	0	109	55	4	11	27	1.55
7236143--7236244	39	2.6	38	80	7	107	43	5	2	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7236228--7236269	19	2.2	19	83	8	50	52	2	2	42	1.27
7236498--7236532	18	1.9	18	88	0	52	25	2	2	68	1.17
7253594--7253648	22	2.5	22	79	5	67	61	9	7	21	1.50
7258297--7258357	20	3.1	20	69	21	65	44	0	9	45	1.37
7268444--7268537	41	2.3	41	100	0	188	26	27	20	25	1.99
7279493--7279588	14	6.6	16	70	19	68	77	8	3	11	1.10
7279477--7279517	21	2.0	21	85	0	55	78	7	2	12	1.06
7279492--7279579	18	5.0	17	67	14	54	78	7	3	10	1.07
7279492--7279542	18	2.9	18	82	8	61	78	9	0	11	0.97
7279516--7279579	20	3.4	19	75	10	60	76	9	4	9	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173