genome.fa.s17.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  51  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14132244--14132319	21	3.7	21	87	7	120	38	13	9	39	1.76
14132221--14132313	21	4.4	20	86	8	107	38	13	8	38	1.76
14132257--14132320	19	3.3	19	84	4	83	39	14	7	39	1.74
14132688--14132720	17	1.9	17	88	11	50	39	0	0	60	0.97
14132690--14132735	22	2.0	23	83	4	58	43	0	0	56	0.99
14149415--14149455	21	1.9	22	90	5	66	9	26	14	48	1.75
14151498--14151555	29	2.0	29	100	0	116	48	10	10	31	1.71
14156462--14156497	18	2.0	18	100	0	72	33	0	27	38	1.57
14162893--14163021	68	1.9	68	91	3	215	50	5	17	27	1.67
14164109--14164173	23	2.8	24	85	2	78	18	27	24	29	1.98
14169140--14169165	13	2.0	13	100	0	52	23	15	23	38	1.92
14170468--14170538	3	23.7	3	72	16	58	60	2	4	32	1.30
14172115--14172318	44	4.6	43	77	3	149	24	24	21	30	1.99
14172115--14172318	88	2.3	88	78	3	194	24	24	21	30	1.99
14172159--14172320	89	1.8	88	83	1	216	23	24	23	29	1.99
14172436--14173013	50	11.6	50	73	4	387	25	20	21	32	1.98
14172433--14172928	100	5.0	100	88	0	643	25	19	21	32	1.97
14173813--14174034	108	2.1	108	90	0	345	48	9	17	25	1.76
14174687--14174719	9	3.7	9	95	0	57	3	0	18	78	0.87
14176005--14176067	31	2.0	32	87	3	92	57	7	17	17	1.63
14177071--14177095	8	3.1	8	100	0	50	72	12	16	0	1.13
14178165--14178205	4	10.2	4	100	0	82	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14178402--14178428	14	1.9	14	100	0	54	37	0	7	55	1.28
14178687--14178760	3	24.7	3	74	15	64	60	2	4	32	1.29
14178696--14178754	8	7.1	8	75	24	52	61	3	1	33	1.23
14178697--14178764	11	6.4	10	76	21	52	63	2	2	30	1.24
14180497--14180675	84	2.1	83	82	1	214	26	20	22	31	1.98
14180535--14180684	42	3.6	42	90	0	230	23	20	21	34	1.97
14181012--14181061	21	2.4	21	79	0	55	2	42	20	36	1.63
14186516--14187138	16	38.4	16	67	21	220	31	2	20	45	1.65
14186516--14187138	9	72.7	9	68	19	266	31	2	20	45	1.65
14186516--14187134	25	24.4	25	70	18	171	31	2	20	45	1.65
14186958--14187004	22	2.2	21	88	7	69	34	2	12	51	1.52
14187067--14187124	12	5.2	12	74	19	63	31	0	15	53	1.42
14187067--14187138	20	3.7	20	85	7	103	30	0	16	52	1.44
14187217--14187259	15	2.9	15	78	0	50	58	0	2	39	1.11
14187435--14187645	69	3.1	69	89	1	325	45	5	5	44	1.48
14190515--14190578	14	4.5	14	71	11	58	35	40	0	23	1.55
14190505--14190594	21	4.2	22	75	4	76	35	41	0	23	1.55
14190872--14190942	15	4.9	15	78	14	78	46	32	0	21	1.51
14190892--14190921	8	3.9	8	91	8	53	46	40	0	13	1.43
14190962--14191000	15	2.7	15	84	4	53	43	35	0	20	1.52
14191229--14191907	114	6.0	114	86	1	925	27	25	22	25	2.00
14191229--14191907	227	3.0	226	87	1	957	27	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14193738--14193791	20	2.5	22	88	5	76	31	0	3	64	1.11
14193736--14193761	13	2.0	13	100	0	52	30	0	0	69	0.89
14193744--14193791	22	2.3	20	89	7	69	31	0	4	64	1.12
14195491--14195604	42	2.7	42	84	2	149	12	35	28	23	1.91
14198059--14198100	18	2.4	18	92	4	68	14	21	42	21	1.88
14203092--14203116	13	1.9	13	100	0	50	80	0	4	16	0.87
14205109--14205133	3	8.3	3	100	0	50	32	0	0	68	0.90
14205561--14205604	23	1.9	24	90	9	74	54	0	20	25	1.45
14207037--14207073	18	2.1	18	90	5	58	40	5	24	29	1.77
14219655--14219687	17	1.9	17	93	0	57	18	15	12	54	1.71
14223074--14223104	16	1.9	16	100	0	62	32	19	6	41	1.77
14223160--14223241	39	2.0	41	81	4	96	35	15	26	21	1.94
14223186--14223276	41	2.2	41	88	5	132	30	15	30	23	1.95
14236075--14236111	11	3.4	11	92	0	56	29	43	5	21	1.75
14242805--14243086	29	9.8	28	82	2	296	20	25	14	38	1.91
14242805--14243086	58	4.9	58	90	1	404	20	25	14	38	1.91
14242805--14243086	87	3.2	87	82	4	345	20	25	14	38	1.91
14252708--14252756	25	1.9	26	87	4	73	46	6	6	40	1.53
14254745--14255007	40	6.6	40	87	3	316	24	20	28	26	1.99
14254784--14255042	80	3.3	80	84	3	238	25	20	28	25	1.99
14262668--14262930	40	6.6	40	87	3	316	24	20	28	26	1.99
14262707--14262965	80	3.3	80	84	3	238	25	20	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14266549--14266598	16	3.1	16	77	13	57	62	0	6	32	1.20
14269460--14269494	12	2.9	12	86	0	52	17	17	0	65	1.27
14275451--14275546	38	2.5	38	91	0	156	38	34	10	16	1.83
14275451--14275564	38	3.0	38	85	2	122	41	31	11	15	1.83
14293187--14293233	21	2.1	23	88	11	71	19	29	0	51	1.47
14293214--14293272	30	1.9	31	86	3	84	20	40	0	38	1.53
14303031--14303071	21	2.0	21	90	0	64	29	21	29	19	1.98
14308503--14308558	28	2.0	28	100	0	112	25	7	14	53	1.66
14308508--14308565	28	2.2	26	87	9	82	22	6	10	60	1.53
14308557--14308624	28	2.4	27	80	9	73	32	1	7	58	1.34
14310918--14311213	27	10.4	28	65	18	121	41	1	3	53	1.26
14311024--14311122	43	2.2	43	79	15	112	39	2	3	55	1.27
14311037--14311070	17	2.0	17	100	0	68	41	0	0	58	0.98
14311037--14311084	15	3.0	15	81	9	51	41	2	0	56	1.11
14310835--14311322	117	4.3	117	91	5	752	42	2	3	51	1.32
14311152--14311305	17	9.2	17	65	22	76	41	1	2	54	1.22
14310835--14311322	232	2.1	227	91	5	772	42	2	3	51	1.32
14310918--14311379	232	2.0	232	90	4	742	42	2	3	51	1.30
14311450--14311554	44	2.5	41	78	18	133	36	30	3	29	1.75
14311466--14311556	46	2.0	46	93	4	159	38	30	4	26	1.76
14311536--14311570	16	2.2	16	94	0	61	22	31	5	40	1.78
14314578--14314629	24	2.2	24	89	0	77	38	1	7	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14318974--14319025	24	2.2	24	85	0	68	38	3	7	50	1.50
14318991--14319036	24	1.9	24	86	8	67	41	4	6	47	1.49
14320057--14320093	3	12.3	3	100	0	74	32	0	0	67	0.91
14320546--14320593	23	2.1	23	100	0	96	27	31	8	33	1.86
14323357--14323412	19	2.8	20	78	10	62	55	0	8	35	1.31
14323358--14323421	21	3.2	21	72	18	64	54	0	9	35	1.33
14335887--14335913	13	2.1	13	100	0	54	48	22	0	29	1.51
14343732--14343758	13	2.1	13	100	0	54	48	22	0	29	1.51
14351015--14351061	19	2.4	19	79	10	51	34	2	4	59	1.29
14351932--14351984	24	2.2	24	80	6	63	20	49	3	26	1.66
14352942--14352980	20	1.9	21	89	5	62	41	15	2	41	1.61
14355475--14355532	20	2.9	19	72	7	62	53	6	3	36	1.45
14360898--14360946	9	5.4	9	90	0	80	26	12	22	38	1.89
14360896--14360946	18	2.8	18	100	0	102	29	11	21	37	1.89
14361085--14361145	30	2.0	31	87	3	88	19	45	0	34	1.51
14369228--14369266	2	19.5	2	94	0	69	0	2	46	51	1.14
14379952--14380011	24	2.4	25	75	8	61	25	23	18	33	1.97
14382923--14382962	15	2.8	14	88	3	53	65	10	2	22	1.35
14384008--14384033	12	2.2	12	100	0	52	92	0	7	0	0.39
14394276--14394313	19	2.0	19	85	10	51	71	0	7	21	1.11
14394683--14394722	18	2.2	18	90	0	62	22	20	12	45	1.84
14394763--14394859	48	2.0	49	85	2	133	19	13	23	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14427560--14427748	58	3.2	57	81	7	209	40	14	18	26	1.89
14427560--14427738	59	3.1	59	84	4	202	41	15	17	25	1.89
14427605--14427778	59	2.9	59	81	5	156	40	14	16	28	1.88
14430215--14430289	31	2.4	32	93	6	136	58	8	0	33	1.27
14439416--14439734	41	7.9	41	87	3	414	21	20	26	31	1.98
14439742--14439787	20	2.4	19	85	7	58	26	4	4	65	1.30
14440263--14440294	7	4.6	7	92	0	55	12	0	53	34	1.39
14440276--14440314	20	2.0	20	84	0	51	25	0	43	30	1.55
14441981--14442010	15	2.0	15	93	0	51	30	0	43	26	1.55
14445510--14445597	43	2.1	42	85	6	115	36	7	10	45	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173