genome.fa.s17.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  49  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13472234--13472297	18	3.4	18	74	16	58	32	3	4	59	1.34
13473697--13473728	16	2.1	16	94	5	57	25	6	15	53	1.65
13483722--13483778	25	2.3	24	87	3	78	26	24	22	26	2.00
13483759--13483878	25	4.8	25	86	3	145	31	22	23	22	1.98
13483745--13483874	50	2.6	50	83	1	154	30	22	23	23	1.99
13492283--13492402	25	4.8	25	83	3	100	24	25	22	27	2.00
13498236--13498312	25	3.2	24	75	21	79	20	19	20	38	1.93
13498246--13498350	49	2.1	50	80	5	115	26	20	21	30	1.98
13499451--13499480	16	1.9	16	93	6	53	30	0	20	50	1.49
13517514--13517605	31	3.2	31	61	25	74	44	19	15	20	1.86
13517503--13517614	55	2.0	55	98	0	215	42	21	16	19	1.89
13522602--13522642	20	2.0	20	86	9	57	58	4	4	31	1.40
13542724--13542767	16	2.8	17	83	12	51	0	29	0	70	0.88
13554391--13554688	29	10.2	28	78	7	265	24	26	12	36	1.91
13554392--13554688	58	5.1	57	77	7	292	24	26	12	36	1.91
13554423--13554688	117	2.3	116	80	6	304	24	26	12	36	1.91
13554391--13554677	88	3.3	87	82	3	335	24	27	11	36	1.90
13556727--13556786	30	2.0	29	87	3	84	40	3	23	33	1.71
13557119--13557399	50	5.8	50	80	11	282	27	20	29	23	1.99
13557203--13557284	40	2.0	40	97	0	155	24	20	30	24	1.99
13557154--13557334	90	2.0	90	89	2	274	26	20	29	22	1.99
13570045--13570170	63	2.0	63	95	0	225	40	12	25	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13576398--13576440	21	2.0	21	90	0	68	39	13	27	18	1.89
13579038--13579440	68	6.0	68	80	2	400	29	22	14	33	1.94
13579038--13579400	135	2.7	135	81	3	408	28	22	14	34	1.94
13579038--13579432	203	1.9	203	84	3	517	28	22	14	34	1.94
13583956--13583996	18	2.2	19	86	4	57	12	48	14	24	1.78
13592790--13592832	21	2.0	21	86	8	61	39	13	4	41	1.66
13595849--13595900	27	1.9	27	84	7	70	48	11	19	21	1.80
13595916--13595995	27	3.0	27	73	12	76	60	11	12	16	1.60
13597124--13597157	16	2.1	16	94	0	59	20	20	38	20	1.94
13602084--13602178	49	2.0	47	89	4	145	10	50	2	36	1.49
13605493--13605523	3	10.0	3	93	6	53	64	0	3	32	1.09
13610006--13610035	3	10.0	3	100	0	60	0	33	0	66	0.92
13610588--13610626	19	2.1	19	85	9	53	69	2	17	10	1.28
13611634--13611680	20	2.3	20	78	7	51	46	6	4	42	1.48
13618370--13618426	28	1.9	28	82	10	69	36	15	26	21	1.93
13632587--13632628	22	2.0	21	85	4	57	50	2	2	45	1.27
13635669--13635731	32	1.9	33	83	3	83	55	11	6	26	1.59
13653285--13653485	31	6.5	31	79	3	163	37	16	15	29	1.91
13653285--13653485	62	3.2	61	78	5	197	37	16	15	29	1.91
13658138--13658171	3	11.7	3	87	6	52	26	0	2	70	1.01
13664737--13664782	18	2.6	17	83	10	56	43	2	19	34	1.63
13664881--13664945	21	3.1	21	77	6	78	20	16	23	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13668672--13668708	16	2.5	14	91	8	56	27	13	2	56	1.50
13681452--13681638	50	3.8	50	78	3	173	27	20	28	22	1.99
13684455--13684481	9	3.0	9	100	0	54	44	0	0	55	0.99
13684966--13685003	10	3.5	11	86	13	53	34	0	2	63	1.09
13688273--13688915	323	2.0	323	93	1	1092	37	22	15	23	1.93
13692945--13692988	22	2.0	21	83	12	54	40	0	0	59	0.98
13701425--13701494	3	23.3	3	100	0	140	32	0	0	67	0.91
13704543--13704578	18	2.0	18	94	0	63	33	2	0	63	1.08
13721504--13721544	20	2.0	20	100	0	82	41	19	4	34	1.73
13724761--13724786	8	3.2	8	100	0	52	38	15	0	46	1.46
13732644--13732682	3	13.0	3	100	0	78	33	0	0	66	0.92
13738980--13739767	175	4.5	174	86	4	968	28	23	23	23	2.00
13738980--13739771	88	9.1	87	87	3	929	28	23	23	23	1.99
13738980--13739776	263	3.1	260	83	5	902	28	23	23	23	1.99
13741281--13741313	3	11.0	3	100	0	66	33	0	0	66	0.92
13744248--13744328	28	3.0	26	75	13	67	60	3	7	28	1.41
13744587--13744611	13	1.9	13	100	0	50	44	0	0	56	0.99
13746944--13747082	39	3.6	39	85	1	172	47	19	2	30	1.64
13754334--13754513	95	1.9	95	87	2	263	27	12	14	45	1.80
13756319--13756388	28	2.6	27	88	8	106	32	12	27	27	1.93
13757375--13757709	47	7.1	47	86	2	379	25	13	17	43	1.86
13764122--13764219	28	3.6	26	85	9	124	31	11	26	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13765203--13765532	47	7.0	47	89	1	403	25	12	17	44	1.84
13766875--13766899	13	1.9	13	100	0	50	40	4	8	48	1.51
13767209--13767233	5	5.0	5	100	0	50	20	0	0	80	0.72
13767977--13768062	43	2.0	43	100	0	172	34	18	20	25	1.96
13775465--13775929	233	2.0	233	98	0	903	27	12	16	42	1.85
13776996--13777061	35	1.9	33	87	6	96	48	7	6	37	1.56
13778176--13778206	16	1.9	16	93	0	53	51	0	0	48	1.00
13778540--13778608	16	4.2	16	96	3	129	24	0	37	37	1.56
13778540--13778608	33	2.1	32	97	2	129	24	0	37	37	1.56
13778589--13778679	45	2.0	45	85	2	121	27	6	28	37	1.82
13778824--13778891	16	4.2	16	74	20	54	54	1	0	44	1.09
13778844--13778891	18	2.8	18	74	22	50	56	0	0	43	0.99
13778833--13778981	15	9.9	15	65	23	55	50	3	1	44	1.26
13778822--13779037	107	2.0	109	96	1	400	49	4	1	43	1.34
13778927--13778972	16	2.9	16	78	12	51	52	2	0	45	1.13
13778825--13779088	107	2.5	107	88	6	362	50	4	1	43	1.32
13778927--13779105	59	3.0	58	67	20	152	50	3	2	43	1.31
13779122--13779338	44	4.9	44	68	16	151	47	2	2	47	1.31
13779122--13779377	91	2.8	91	94	1	455	47	2	2	47	1.29
13779145--13779377	44	5.2	43	70	15	177	48	2	2	46	1.27
13780372--13780407	17	2.1	17	100	0	72	41	16	0	41	1.48
13790672--13790726	20	2.8	20	80	2	67	41	9	18	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13791954--13792016	29	2.2	29	94	0	108	31	14	11	42	1.80
13792314--13792378	11	5.8	12	77	12	75	24	29	1	44	1.63
13792338--13792436	50	2.0	51	88	6	148	24	27	2	46	1.63
13792623--13792676	19	2.7	19	85	5	72	42	11	9	37	1.73
13792624--13792684	19	3.1	19	75	13	61	44	9	9	36	1.71
13792877--13792915	19	2.0	21	85	10	55	15	10	5	69	1.34
13796455--13797330	21	41.0	21	73	9	585	45	26	1	26	1.60
13796455--13797330	43	20.5	43	75	8	623	45	26	1	26	1.60
13796456--13796623	92	1.8	92	89	2	266	42	31	0	26	1.56
13796455--13797330	64	13.7	64	74	13	358	45	26	1	26	1.60
13796617--13796698	36	2.2	36	85	6	112	48	25	0	25	1.51
13796884--13796961	37	2.1	36	81	6	86	50	23	1	25	1.57
13800407--13801079	127	5.3	126	85	2	820	29	22	16	31	1.96
13800407--13801092	126	5.5	125	85	2	799	29	22	16	31	1.96
13800412--13801096	253	2.7	253	85	3	891	29	22	16	31	1.96
13804902--13804961	32	1.9	33	83	12	83	65	5	1	28	1.23
13817950--13818239	55	5.2	56	81	6	302	50	14	8	26	1.70
13817950--13818239	110	2.6	113	82	6	356	50	14	8	26	1.70
13819732--13819791	30	2.0	31	83	9	79	45	0	35	20	1.51
13819975--13820011	9	4.1	9	89	0	56	29	13	10	45	1.77
13821177--13821212	6	6.0	6	100	0	72	16	0	0	83	0.65
13821836--13821893	21	2.9	21	82	10	68	22	0	6	70	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13821916--13821981	29	2.3	28	79	5	69	22	16	18	42	1.89
13822137--13822162	12	2.2	12	100	0	52	30	30	0	38	1.58
13822135--13822256	51	2.4	51	90	4	183	27	29	0	43	1.55
13822258--13822323	32	2.1	32	91	2	107	36	0	0	63	0.95
13823405--13823429	7	3.6	7	100	0	50	28	0	12	60	1.32
13824080--13824114	18	1.9	18	88	0	52	25	34	8	31	1.86
13824518--13824628	25	4.6	25	67	20	83	37	2	14	45	1.59
13824516--13824700	71	2.6	71	94	0	325	37	3	14	44	1.62
13824703--13824744	20	2.1	20	100	0	84	23	14	38	23	1.92
13828897--13828930	5	6.4	5	87	12	50	76	0	2	20	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173