genome.fa.s17.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  159  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47797694--47797721	7	4.0	7	100	0	56	57	0	0	42	0.99
47808050--47808112	31	2.0	32	87	3	92	71	4	11	12	1.29
47808116--47808152	11	3.3	11	92	7	65	81	8	2	8	0.97
47808934--47808991	17	3.4	17	74	25	59	46	1	1	50	1.22
47809013--47809092	40	2.0	41	92	2	135	53	0	1	45	1.08
47809123--47809233	19	6.1	18	69	17	77	37	2	1	57	1.23
47809184--47809235	26	1.9	28	84	7	72	36	0	1	61	1.07
47809173--47809307	68	2.0	68	97	1	254	41	4	1	52	1.30
47809238--47809277	19	2.1	19	85	0	53	45	5	0	50	1.23
47816298--47816363	29	2.2	30	83	5	80	56	10	12	21	1.65
47817039--47817066	13	2.2	13	100	0	56	60	0	0	39	0.97
47822211--47822245	11	3.2	11	87	0	52	71	11	0	17	1.14
47837317--47837358	16	2.6	16	80	0	57	83	0	0	16	0.65
47846514--47847166	108	6.0	108	93	0	1081	37	26	5	30	1.80
47848139--47848680	205	2.6	211	77	12	537	26	12	18	42	1.86
47857147--47857225	29	2.8	30	77	12	69	25	25	11	37	1.89
47857157--47857225	28	2.5	27	86	11	95	26	27	13	33	1.93
47862038--47862176	46	3.0	46	90	2	199	30	24	8	36	1.85
47865375--47865417	21	2.0	21	100	0	86	23	13	20	41	1.88
47867714--47867758	20	2.2	20	92	0	81	64	0	4	31	1.13
47867709--47867757	20	2.3	20	93	6	80	61	0	6	32	1.21
47868564--47868616	20	2.5	21	82	14	65	30	0	5	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47869083--47869112	3	10.0	3	100	0	60	33	66	0	0	0.92
47870564--47870624	31	2.0	31	93	0	104	42	4	4	47	1.46
47873606--47873665	31	1.9	31	89	0	93	43	5	13	38	1.66
47874693--47874746	25	2.2	25	89	0	81	57	0	1	40	1.09
47875083--47875143	31	2.0	31	90	6	97	60	0	1	37	1.07
47875083--47875174	11	8.9	11	72	18	65	59	0	2	38	1.09
47875118--47875190	17	4.0	17	73	20	58	64	0	1	34	1.02
47875083--47875228	40	3.6	40	88	4	213	63	0	2	34	1.09
47875131--47875192	9	6.4	9	75	17	54	69	0	1	29	0.98
47879204--47879286	31	2.7	31	71	0	76	30	19	21	28	1.98
47884498--47884673	30	6.0	29	75	14	132	30	25	5	38	1.79
47885217--47885279	12	4.9	13	76	21	62	77	0	22	0	0.76
47885214--47885276	18	3.2	22	69	26	61	76	0	23	0	0.79
47885220--47885279	10	5.7	10	74	18	50	78	0	21	0	0.75
47885228--47885279	12	4.3	12	80	9	70	80	0	19	0	0.71
47885734--47885771	20	1.9	20	88	0	58	36	13	7	42	1.73
47885917--47886104	17	10.9	16	69	20	69	31	13	11	43	1.80
47885914--47885973	19	3.3	19	70	29	58	43	11	11	33	1.77
47885924--47886024	17	5.8	18	73	12	77	30	15	12	40	1.85
47885926--47886094	70	2.4	70	90	3	250	31	13	11	43	1.80
47885889--47886045	36	4.4	36	78	9	162	35	13	12	39	1.82
47885963--47886096	17	7.8	17	73	12	76	30	12	10	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47886057--47886110	16	3.2	16	77	10	54	35	12	11	40	1.79
47886074--47886128	18	3.1	18	84	5	58	40	12	9	38	1.75
47895281--47895336	10	5.6	10	82	6	69	87	8	3	0	0.65
47895281--47895326	14	3.3	14	93	6	76	89	10	0	0	0.50
47895281--47895341	24	2.6	23	86	5	77	85	9	3	1	0.78
47896217--47898500	76	29.7	76	88	5	2944	27	16	20	35	1.94
47896217--47898500	387	5.9	385	86	7	2939	27	16	20	35	1.94
47897871--47897972	34	3.0	34	100	0	204	17	17	38	26	1.92
47898684--47898818	30	4.5	31	80	7	138	34	25	1	38	1.65
47899431--47899481	19	2.7	20	82	11	54	80	0	9	9	0.91
47899906--47899943	20	1.9	20	100	0	76	39	10	5	44	1.61
47900061--47900276	17	12.4	17	71	9	141	32	13	12	41	1.82
47900051--47900152	35	2.9	35	84	4	118	41	11	11	35	1.78
47900087--47900155	18	3.9	18	70	22	56	36	11	11	40	1.78
47900098--47900266	71	2.4	71	90	4	254	31	13	11	43	1.80
47900892--47900923	15	2.1	15	94	0	55	43	25	0	31	1.55
47901394--47901537	71	2.0	71	98	0	279	38	11	15	35	1.83
47903569--47903606	16	2.2	18	86	9	53	28	0	2	68	1.03
47905763--47906129	36	10.1	36	68	10	156	23	19	21	34	1.97
47905866--47906078	71	2.9	74	83	4	218	25	20	21	32	1.97
47905977--47906103	35	3.6	34	71	6	101	23	19	23	33	1.97
47905947--47906173	71	3.2	70	85	1	292	23	21	22	33	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47906999--47907044	22	2.1	21	84	11	58	26	0	19	54	1.44
47910954--47910999	19	2.6	18	77	16	51	39	0	0	60	0.97
47914256--47914313	28	2.0	28	83	9	73	46	0	3	50	1.18
47914431--47914511	38	2.1	38	88	6	117	39	0	6	54	1.26
47916609--47916662	21	2.6	21	78	0	63	29	1	12	55	1.48
47917468--47917529	29	2.1	29	85	5	81	45	6	4	43	1.51
47930072--47930108	12	3.2	12	81	14	51	59	0	0	40	0.97
47936940--47936979	18	2.2	19	86	4	55	52	20	2	25	1.59
47939366--47939412	3	15.7	3	86	0	67	68	6	0	25	1.13
47942424--47942532	41	2.6	41	89	1	155	24	22	28	23	2.00
47944029--47944077	25	2.0	25	88	8	73	46	0	2	51	1.12
47945694--47945814	41	2.9	41	83	1	134	28	18	19	33	1.96
47948444--47948538	24	4.0	25	79	10	92	14	23	24	37	1.92
47949898--47949948	6	8.2	6	93	2	75	62	0	21	15	1.32
47965220--47965671	126	3.6	126	91	0	728	29	17	23	29	1.97
47968704--47968996	53	5.5	53	90	3	466	42	4	8	44	1.54
47969117--47969179	15	4.4	14	73	9	56	23	0	31	44	1.54
47969117--47969179	29	2.2	28	83	13	76	23	0	31	44	1.54
47969093--47969355	22	11.9	22	65	16	80	26	0	24	48	1.54
47969235--47969274	21	1.9	21	84	0	53	20	0	25	55	1.44
47969383--47969664	22	13.4	21	66	14	98	25	0	24	49	1.53
47969381--47969502	42	2.9	42	80	9	133	23	0	27	49	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47969249--47969605	185	1.9	187	85	5	492	25	0	24	49	1.54
47969383--47969532	41	3.5	44	76	8	121	24	0	25	50	1.50
47969527--47969663	44	3.1	43	75	9	127	27	0	23	48	1.56
47969623--47969718	50	1.9	50	87	4	140	25	0	20	54	1.45
47969673--47969749	22	3.5	21	76	1	64	22	1	22	54	1.52
47969808--47969879	37	2.0	35	84	10	92	26	0	23	50	1.50
47973530--47973568	21	2.0	20	85	10	53	48	0	0	51	1.00
47976582--47976611	15	1.9	16	93	6	53	26	16	0	56	1.40
48000020--48000056	3	12.0	3	94	5	65	35	0	0	64	0.94
48005414--48005457	16	2.7	16	82	3	52	31	2	2	63	1.19
48007897--48007940	23	1.9	23	86	9	63	45	13	13	27	1.81
48015780--48015957	62	2.9	60	79	10	198	23	12	30	33	1.91
48015780--48015957	61	2.9	63	82	7	222	23	12	30	33	1.91
48021221--48021253	12	2.8	12	95	0	57	42	0	54	3	1.15
48022949--48022997	24	2.0	24	92	0	80	26	4	2	67	1.19
48025746--48025825	29	2.7	29	86	5	97	30	12	12	45	1.79
48025746--48025836	29	3.0	29	82	7	94	29	14	12	43	1.81
48026622--48026652	14	2.2	14	94	0	53	48	12	0	38	1.42
48027475--48027532	30	1.9	30	82	0	71	15	31	36	17	1.91
48028696--48028721	7	3.7	7	100	0	52	42	0	0	57	0.98
48029852--48029956	25	4.3	25	89	3	144	16	25	20	37	1.93
48029852--48029980	50	2.7	47	83	7	138	16	25	19	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48029852--48029978	25	5.3	23	85	6	114	16	25	19	37	1.93
48029926--48029979	22	2.5	22	84	6	65	12	27	16	42	1.85
48032919--48032951	12	2.6	13	85	9	50	12	0	3	84	0.72
48034231--48034272	21	1.9	23	85	9	61	54	2	0	42	1.13
48044100--48044200	36	2.8	37	78	11	111	41	8	12	36	1.75
48044907--48044943	15	2.5	15	87	12	51	0	18	0	81	0.70
48044916--48044956	18	2.2	19	86	4	57	0	29	0	70	0.87
48044916--48044967	19	2.8	18	82	5	59	0	32	0	67	0.91
48045057--48045116	15	4.2	15	78	16	56	1	23	0	75	0.90
48045037--48045121	28	3.0	29	76	19	74	2	25	0	71	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173