genome.fa.s17.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  125  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38274979--38275033	18	3.2	18	82	15	71	10	3	10	74	1.19
38275008--38275045	19	2.0	19	85	10	51	10	5	15	68	1.36
38289184--38289208	3	8.3	3	100	0	50	32	36	0	32	1.58
38291935--38291982	3	16.0	3	95	0	87	33	2	0	64	1.05
38292176--38292204	12	2.4	12	100	0	58	41	10	0	48	1.37
38293496--38293599	44	2.5	41	76	18	99	32	2	26	37	1.72
38293709--38293906	59	3.4	59	71	13	185	53	3	0	42	1.22
38293738--38293972	117	2.0	119	93	2	384	51	4	1	42	1.31
38293732--38293969	120	2.0	119	93	2	408	51	4	1	42	1.30
38295359--38295462	49	2.1	49	92	0	172	49	10	7	32	1.66
38305197--38305372	87	2.0	88	94	1	309	28	18	18	34	1.95
38307076--38307126	16	3.2	16	80	0	66	29	21	3	45	1.70
38307386--38307414	14	2.1	14	100	0	58	62	0	0	37	0.96
38307786--38307887	42	2.3	45	80	8	120	65	0	0	33	0.99
38329230--38329303	31	2.4	31	82	10	89	63	2	0	33	1.09
38340515--38340569	24	2.2	25	83	6	67	58	10	14	16	1.64
38343997--38344042	23	2.0	23	100	0	92	34	26	0	39	1.57
38345040--38345080	21	2.0	21	85	9	57	41	9	7	41	1.66
38345310--38345357	24	2.0	24	95	0	87	20	14	25	39	1.91
38348532--38348579	17	2.8	17	81	15	62	37	2	18	41	1.63
38357120--38357174	22	2.5	22	80	11	76	25	30	23	20	1.98
38358384--38358460	39	2.0	39	84	5	102	20	15	16	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38360409--38360458	15	3.2	15	78	10	64	36	4	0	60	1.16
38363794--38363866	19	3.8	18	76	5	65	30	6	1	61	1.30
38363901--38363954	10	5.7	10	78	12	60	25	1	1	70	1.07
38363890--38363954	19	3.4	19	80	4	78	26	3	1	69	1.12
38363890--38363954	10	6.9	9	74	13	51	26	3	1	69	1.12
38366711--38366778	15	4.6	15	78	8	59	50	1	2	45	1.26
38366735--38366800	16	3.9	16	78	8	60	56	0	3	40	1.15
38366721--38366800	33	2.4	32	81	6	88	55	1	2	41	1.21
38366721--38366786	15	4.1	15	82	9	69	56	1	1	40	1.18
38368612--38368705	24	3.9	23	79	8	80	20	25	17	37	1.93
38368612--38368681	24	2.8	25	85	6	90	17	25	18	38	1.92
38368752--38368883	24	5.4	25	74	13	96	21	21	19	37	1.94
38368775--38368883	49	2.2	50	85	3	141	21	22	19	37	1.94
38368775--38368896	25	5.0	25	73	13	92	19	22	19	38	1.93
38373022--38373268	76	3.3	75	82	2	305	24	18	21	35	1.95
38373022--38373268	36	6.5	39	71	14	138	24	18	21	35	1.95
38374781--38374815	17	2.1	17	88	0	52	54	0	14	31	1.40
38374889--38374915	13	2.1	13	100	0	54	29	0	37	33	1.58
38376952--38377027	9	8.1	9	72	17	57	48	1	2	47	1.24
38381590--38381656	18	3.6	18	84	7	89	47	0	0	52	1.00
38381568--38381671	38	2.8	38	83	1	129	51	0	0	47	1.07
38381589--38381664	19	4.1	18	77	15	75	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38387386--38387445	26	2.4	25	80	5	66	33	8	13	45	1.73
38392394--38392455	26	2.4	26	83	0	79	33	14	11	40	1.82
38393553--38393617	28	2.2	30	81	13	89	40	4	12	43	1.63
38393565--38393621	28	2.0	28	100	0	114	35	3	10	50	1.54
38394402--38394483	30	2.8	29	85	3	110	41	4	19	34	1.73
38400881--38400942	25	2.5	25	80	15	83	22	27	20	29	1.99
38401063--38401192	62	2.1	62	100	0	260	43	12	14	30	1.82
38405910--38405954	19	2.4	18	78	7	54	15	11	0	73	1.10
38406711--38406779	3	23.0	3	74	11	61	31	4	1	62	1.24
38409674--38409702	13	2.2	13	100	0	58	37	6	17	37	1.76
38409831--38410052	40	5.6	39	84	4	239	24	20	27	26	1.99
38409906--38410087	78	2.3	79	82	4	217	25	20	28	25	1.99
38417718--38417939	40	5.6	39	84	5	223	24	20	28	26	1.99
38417792--38417974	79	2.3	80	81	1	217	25	20	28	25	1.99
38421218--38421267	26	1.9	26	87	0	73	54	4	4	38	1.38
38422378--38422434	25	2.3	25	78	0	69	28	24	19	28	1.98
38423852--38423944	24	3.9	23	80	6	87	20	25	17	36	1.94
38423852--38423920	23	2.9	23	86	4	93	17	26	18	37	1.93
38424005--38424075	24	3.1	21	78	15	70	15	18	22	43	1.87
38424014--38424121	49	2.2	48	83	4	128	21	21	19	37	1.94
38424014--38424134	25	5.0	25	73	14	83	19	21	19	38	1.93
38428258--38428504	76	3.2	76	83	0	323	24	18	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38428258--38428504	36	6.5	39	71	14	147	24	18	21	35	1.95
38430018--38430052	17	2.1	17	88	0	52	54	0	14	31	1.40
38430126--38430152	13	2.1	13	100	0	54	29	0	37	33	1.58
38432189--38432264	9	8.1	9	72	17	57	51	1	1	46	1.17
38435465--38435503	20	1.9	21	89	5	62	25	7	20	46	1.77
38442231--38442270	6	6.7	6	100	0	80	85	0	0	15	0.61
38442351--38442396	19	2.4	20	89	7	69	36	0	4	58	1.18
38445030--38445087	22	2.9	18	75	20	62	31	5	12	51	1.61
38445478--38445553	33	2.3	33	83	0	89	26	1	48	23	1.59
38446832--38446900	34	2.0	34	100	0	138	31	8	23	36	1.85
38448660--38448698	16	2.4	16	86	0	51	30	2	33	33	1.72
38448722--38449137	212	2.0	210	91	2	674	38	15	10	35	1.82
38451720--38451780	31	2.0	30	90	9	97	40	16	9	32	1.81
38455984--38456058	32	2.3	32	93	4	123	1	12	14	72	1.20
38455999--38456036	20	1.9	20	94	0	67	0	10	15	73	1.09
38458275--38458319	23	2.0	23	86	4	65	68	0	6	24	1.13
38469907--38469987	35	2.3	35	100	0	162	50	9	19	19	1.75
38479769--38480055	153	1.9	153	91	1	468	38	16	5	39	1.71
38480402--38480433	2	16.0	2	100	0	64	0	50	0	50	1.00
38483066--38483128	31	2.0	31	100	0	126	25	26	12	34	1.92
38484632--38484786	54	2.9	52	83	8	186	18	14	18	47	1.82
38484632--38484756	27	4.7	27	86	4	164	20	15	19	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38484632--38484772	27	5.3	26	85	4	156	19	14	19	46	1.84
38487366--38487461	37	2.6	37	80	8	106	31	22	1	44	1.60
38490124--38490165	20	2.1	20	86	0	57	42	4	2	50	1.36
38493576--38493626	4	12.8	4	95	0	93	50	23	0	25	1.49
38498723--38498771	24	2.0	24	100	0	98	36	18	8	36	1.81
38508428--38508459	17	1.9	17	93	6	57	43	0	25	31	1.55
38516573--38516719	41	3.6	41	90	0	231	24	19	22	33	1.97
38517144--38517194	21	2.4	21	80	0	57	49	11	7	31	1.68
38519575--38519616	22	1.9	22	95	0	75	59	4	19	16	1.54
38520220--38520261	22	1.9	22	100	0	84	42	9	11	35	1.74
38521402--38521557	4	37.5	4	72	20	60	68	0	30	0	0.99
38521433--38521556	10	12.3	11	73	16	90	69	0	29	0	0.94
38521410--38521558	20	7.6	20	70	16	105	68	0	30	0	0.99
38521400--38521531	41	3.3	41	87	6	173	68	0	30	0	1.01
38521890--38523095	317	3.9	317	88	4	1653	50	7	10	31	1.64
38522868--38522909	21	2.0	22	85	4	59	57	4	2	35	1.33
38525527--38525652	40	3.1	38	76	16	114	50	11	3	33	1.57
38525912--38525972	27	2.3	27	94	5	106	19	26	31	22	1.98
38528614--38528642	14	2.0	15	93	6	51	31	0	0	68	0.89
38529379--38529416	20	1.9	20	94	0	67	65	5	2	26	1.27
38542118--38542244	50	2.6	47	77	10	119	34	17	25	22	1.96
38543399--38543433	17	2.1	16	94	5	61	31	17	14	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38547152--38547238	43	2.0	43	100	0	174	34	18	16	31	1.93
38562237--38562284	18	2.7	18	83	6	62	16	22	20	39	1.92
38567271--38567295	13	1.9	13	100	0	50	32	4	24	40	1.73
38569588--38569748	43	3.7	43	92	0	250	21	19	28	31	1.97
38573228--38573266	20	2.0	20	85	10	53	46	10	0	43	1.37
38574940--38574987	24	2.0	24	100	0	96	25	16	25	33	1.96
38574943--38574997	24	2.3	24	87	0	74	29	14	21	34	1.93
38577483--38577509	14	1.9	14	100	0	54	55	7	14	22	1.64
38578344--38578593	24	10.7	24	72	13	155	34	5	4	55	1.43
38578348--38578568	45	4.8	46	69	13	55	34	6	4	54	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173