genome.fa.s17.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  131  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40006523--40006606	37	2.3	37	85	4	107	21	10	15	52	1.73
40007112--40007155	18	2.2	20	84	11	56	38	0	4	56	1.20
40008054--40008086	3	11.0	3	100	0	66	33	0	0	66	0.92
40008997--40009028	3	10.7	3	100	0	64	68	0	0	31	0.90
40009807--40009851	5	9.2	5	97	2	83	40	0	0	60	0.97
40009871--40009900	15	2.1	14	93	6	51	46	6	0	46	1.29
40010504--40010643	69	2.0	69	87	8	205	25	14	25	35	1.93
40012999--40013039	21	2.0	20	86	13	57	24	4	12	58	1.53
40015852--40015893	16	2.5	17	77	18	52	30	0	0	69	0.89
40016093--40016148	24	2.3	24	93	0	103	28	16	23	32	1.96
40030300--40030500	96	2.1	96	99	0	393	31	14	23	29	1.95
40031550--40031611	18	3.5	17	70	16	54	24	25	25	24	2.00
40031532--40031613	36	2.3	36	86	0	119	21	26	26	24	2.00
40031755--40031807	24	2.2	24	82	0	61	32	7	9	50	1.62
40044075--40044277	103	2.0	103	97	0	379	30	14	14	40	1.86
40049018--40049051	16	2.1	16	100	0	68	5	38	11	44	1.65
40053224--40053279	29	2.0	29	82	10	71	57	1	1	39	1.20
40054052--40054087	3	12.0	3	100	0	72	0	0	66	33	0.92
40054303--40054353	20	2.6	19	81	12	59	60	5	0	33	1.21
40057741--40057785	22	2.0	22	83	8	56	57	8	0	33	1.30
40057762--40057787	12	2.2	12	100	0	52	46	7	0	46	1.31
40061523--40061618	31	3.1	31	95	3	174	31	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40061921--40061959	4	10.0	4	94	5	71	25	0	0	74	0.82
40062191--40062241	19	2.7	18	81	6	57	76	11	9	1	1.10
40062205--40062286	10	8.0	10	72	18	62	75	12	10	1	1.10
40062217--40062288	11	6.6	11	72	13	60	75	11	12	1	1.12
40066813--40066908	31	3.1	31	95	3	174	31	9	13	45	1.75
40073217--40073280	11	6.3	10	81	15	60	23	3	4	68	1.23
40073217--40073280	20	3.2	19	82	8	74	23	3	4	68	1.23
40076322--40076437	25	4.6	25	80	4	117	36	17	30	16	1.92
40076272--40076437	75	2.2	75	80	4	190	34	16	28	19	1.94
40076591--40076644	21	2.5	22	82	8	67	55	11	0	33	1.35
40076591--40076644	22	2.5	22	79	8	58	55	11	0	33	1.35
40078841--40078932	37	2.4	37	81	12	98	41	3	4	51	1.38
40078990--40079030	21	2.0	20	85	4	55	53	2	0	43	1.13
40081539--40081586	25	1.9	25	83	8	62	45	2	0	52	1.12
40081543--40081592	20	2.7	19	80	20	61	46	2	0	52	1.12
40082897--40083015	34	3.5	34	82	0	139	32	11	14	41	1.82
40098127--40098162	18	2.0	18	100	0	72	44	0	5	50	1.25
40105140--40105401	133	2.0	133	84	0	344	23	23	25	27	2.00
40111102--40111153	25	2.1	25	82	7	61	42	1	1	53	1.23
40114900--40114939	18	2.2	19	86	4	55	65	2	2	30	1.19
40114970--40115006	9	4.0	9	89	3	56	67	10	0	21	1.21
40116406--40116607	82	2.5	81	95	0	359	26	6	16	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40117991--40118207	112	1.9	112	85	12	294	47	17	8	26	1.76
40119135--40119179	23	2.0	23	82	8	56	51	6	4	37	1.49
40120974--40121053	38	2.1	38	97	0	151	41	2	38	17	1.63
40124493--40124717	118	1.9	119	96	3	416	30	26	17	26	1.97
40124931--40124968	19	2.0	20	89	5	60	5	31	0	63	1.17
40127431--40127465	16	2.1	17	89	5	54	42	11	0	45	1.40
40136399--40136548	42	3.5	42	80	6	151	25	17	26	30	1.97
40136399--40136559	43	3.7	43	78	8	168	24	16	27	31	1.96
40137719--40137762	20	2.2	20	84	8	54	43	2	15	38	1.60
40138011--40138038	14	2.0	14	100	0	56	50	0	21	28	1.49
40150461--40150514	24	2.2	24	96	0	99	50	18	9	22	1.75
40158010--40158072	31	2.0	31	100	0	126	31	6	33	28	1.82
40163316--40163371	26	2.3	26	79	14	66	23	26	17	32	1.97
40167901--40167957	28	2.0	28	96	0	105	31	19	35	14	1.91
40169494--40169594	52	2.0	51	90	3	159	29	12	14	42	1.83
40172689--40172793	40	2.6	40	84	0	120	20	23	29	25	1.99
40172835--40172900	28	2.4	28	87	5	89	37	1	22	37	1.64
40172846--40172907	28	2.2	28	82	0	79	38	1	17	41	1.59
40174205--40174380	59	3.0	59	84	1	201	50	9	5	35	1.58
40174824--40174848	12	2.1	12	100	0	50	52	8	0	40	1.31
40175190--40175746	47	11.9	47	91	1	913	40	15	11	32	1.83
40175192--40175746	280	2.0	281	97	0	1040	40	15	11	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40175190--40175746	140	4.0	141	92	1	931	40	15	11	32	1.83
40176000--40176034	15	2.3	15	90	9	54	51	22	0	25	1.48
40176726--40176808	43	1.9	43	90	9	134	33	31	19	15	1.93
40183348--40183950	47	12.9	47	91	1	962	41	15	11	32	1.83
40183323--40183950	93	6.7	91	89	4	763	41	15	11	32	1.83
40183348--40183950	280	2.2	279	95	0	1071	41	15	11	32	1.83
40184204--40184238	15	2.3	15	90	9	54	51	22	0	25	1.48
40186304--40186345	18	2.3	18	87	0	66	42	4	26	26	1.75
40187258--40187357	49	2.0	49	92	0	164	24	24	15	37	1.93
40187916--40187992	31	2.4	34	78	18	85	63	1	2	32	1.16
40194068--40194112	3	15.0	3	100	0	90	33	0	0	66	0.92
40199030--40199085	8	6.4	8	82	13	58	78	8	0	12	0.96
40199029--40199085	9	6.3	9	84	11	73	78	8	0	12	0.95
40199025--40199071	19	2.4	19	96	3	85	78	10	0	10	0.96
40199025--40199063	11	3.7	11	86	13	64	79	10	0	10	0.94
40199947--40199976	8	3.6	8	95	4	51	76	0	13	10	1.01
40199946--40199983	16	2.3	17	81	4	51	76	0	13	10	1.02
40201157--40201887	170	4.2	170	91	2	1102	29	19	22	28	1.98
40201157--40201836	345	2.0	345	93	0	1171	30	19	21	28	1.98
40201161--40201933	345	2.2	345	88	2	1049	30	19	21	28	1.98
40201717--40202163	129	3.5	129	89	0	642	30	18	21	29	1.97
40201726--40202251	258	2.0	255	79	3	552	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40203545--40203574	3	10.0	3	92	0	51	30	3	0	66	1.07
40205073--40205124	24	2.2	24	89	0	77	55	9	1	32	1.43
40207835--40207913	21	3.6	21	70	18	61	39	0	3	56	1.17
40207843--40207884	19	2.2	19	83	8	50	42	0	0	57	0.99
40207873--40207913	21	2.0	21	90	4	66	34	0	4	60	1.18
40207824--40207902	21	3.1	26	72	22	78	41	1	2	54	1.22
40213375--40213411	15	2.5	15	100	0	74	48	8	8	35	1.62
40216443--40216506	33	2.0	32	90	3	101	39	25	9	26	1.86
40216721--40216917	41	4.8	41	92	5	317	27	22	20	28	1.99
40218452--40218476	13	1.9	13	100	0	50	68	24	0	8	1.16
40223787--40223819	16	2.1	16	94	0	57	36	3	36	24	1.71
40223799--40223888	45	2.0	44	84	2	117	33	5	27	33	1.80
40224037--40224080	16	2.8	16	82	10	54	50	2	0	47	1.13
40224042--40224439	120	3.4	120	95	3	729	50	5	1	43	1.33
40224158--40224209	15	3.6	15	80	12	56	53	1	0	44	1.11
40224275--40224325	14	3.7	14	79	10	52	52	0	0	47	1.00
40224296--40224329	17	2.0	17	88	11	52	55	0	0	44	0.99
40224400--40224454	15	3.4	15	77	18	65	49	0	0	50	1.00
40224400--40224452	19	3.1	17	84	10	65	49	0	0	50	1.00
40224408--40224485	16	4.8	16	74	21	56	52	2	0	44	1.14
40229548--40229575	13	2.2	13	100	0	56	64	21	14	0	1.29
40232108--40232149	14	2.9	15	83	13	52	42	4	2	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40232123--40232149	14	1.9	14	100	0	54	37	7	3	51	1.48
40237262--40237414	46	3.4	46	95	1	265	29	22	15	32	1.94
40237388--40237442	28	2.0	28	100	0	110	34	25	7	32	1.83
40237342--40237488	74	2.0	74	98	0	285	32	22	12	32	1.91
40237416--40237544	46	2.8	46	96	0	231	31	21	13	33	1.92
40237296--40237530	120	2.0	120	96	0	434	31	22	13	32	1.93
40240065--40240107	18	2.4	18	92	0	68	30	27	30	11	1.92
40240271--40240311	21	2.0	21	85	9	57	36	24	14	24	1.93
40246121--40246162	19	2.2	20	87	12	61	57	7	0	35	1.26
40246620--40246683	11	5.6	12	78	14	64	25	31	0	43	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173