genome.fa.s17.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  166  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49732723--49732768	17	2.6	18	83	13	60	41	6	2	50	1.40
49734587--49734702	60	1.9	59	82	1	142	23	18	15	43	1.88
49739623--49739679	23	2.5	23	91	0	96	29	24	21	24	1.99
49739643--49739747	37	2.8	37	95	0	192	30	25	19	24	1.98
49741330--49741411	24	3.3	24	78	10	85	18	24	15	41	1.89
49741360--49741407	25	2.0	24	91	4	78	14	25	18	41	1.88
49742868--49742907	9	4.4	9	93	0	71	25	12	22	40	1.89
49742959--49742995	9	4.1	9	92	0	65	48	10	8	32	1.67
49746093--49746134	21	2.0	21	81	9	50	40	2	0	57	1.12
49757491--49757532	20	2.3	17	84	15	57	28	2	14	54	1.52
49766004--49766031	13	2.2	13	100	0	56	28	7	32	32	1.84
49768177--49768232	21	2.7	21	85	0	76	26	5	35	32	1.79
49768441--49768508	33	2.0	34	85	2	93	52	1	0	45	1.09
49770355--49770415	29	2.1	29	85	11	81	29	8	0	62	1.24
49772420--49772453	16	2.2	15	94	5	59	67	5	2	23	1.26
49773912--49773938	14	1.9	14	100	0	54	66	11	0	22	1.22
49797691--49797733	3	14.0	3	95	4	77	65	2	0	32	1.06
49797910--49797954	19	2.4	18	92	7	81	77	0	0	22	0.76
49797918--49797950	15	2.1	16	94	5	59	75	0	0	24	0.80
49799417--49800351	132	7.1	132	91	0	1476	29	24	17	28	1.97
49800468--49800948	95	5.0	95	95	1	847	28	21	19	30	1.98
49800955--49801148	46	4.3	46	64	10	121	30	24	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49800848--49801259	134	3.1	134	93	2	684	29	22	19	28	1.98
49801207--49801470	86	3.1	86	88	0	393	26	23	23	26	2.00
49808148--49808187	3	13.0	3	94	5	71	65	2	0	32	1.06
49808369--49808409	18	2.2	18	95	4	73	75	0	0	24	0.80
49808366--49808413	22	2.3	21	89	10	80	77	0	0	22	0.78
49808368--49808410	19	2.2	20	88	12	72	76	0	0	23	0.78
49821309--49821374	31	2.1	31	94	0	114	42	12	12	33	1.79
49828020--49828172	79	1.9	79	97	0	288	35	11	24	28	1.90
49835376--49835412	19	2.0	19	89	5	58	27	18	0	54	1.44
49836206--49836271	31	2.1	31	94	0	114	42	12	12	33	1.79
49843634--49843674	16	2.6	16	82	14	50	43	4	14	36	1.67
49845624--49845712	39	2.3	39	82	5	110	16	32	19	31	1.94
49846174--49846214	19	2.2	19	90	0	64	58	0	2	39	1.11
49848511--49848564	23	2.4	23	84	6	67	57	7	3	31	1.44
49848514--49848584	3	23.3	3	71	8	54	60	5	2	30	1.34
49849045--49849082	18	2.1	18	90	0	58	50	0	50	0	1.00
49849046--49849078	11	2.9	12	91	8	52	48	0	51	0	1.00
49850181--49850238	30	1.9	30	89	0	89	41	3	24	31	1.71
49850450--49850481	13	2.5	13	94	0	55	31	0	12	56	1.37
49850576--49850774	50	3.8	51	84	6	240	26	23	28	21	1.99
49850588--49850774	101	1.8	102	86	8	270	26	23	28	21	1.99
49853223--49853282	22	3.1	19	83	11	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49854864--49854896	16	2.1	16	88	11	50	72	0	0	27	0.85
49854774--49855031	136	1.9	136	100	0	516	41	10	15	32	1.82
49855309--49855377	31	2.3	30	82	5	86	46	13	10	30	1.75
49866563--49866621	27	2.1	30	87	9	88	42	1	1	54	1.20
49871305--49871366	10	5.9	10	74	10	52	33	32	3	30	1.74
49871305--49871367	21	3.0	21	88	2	90	33	33	3	30	1.74
49872729--49872773	22	2.0	22	86	0	63	82	2	11	4	0.91
49872729--49872764	10	3.8	9	89	10	54	86	2	8	2	0.77
49877361--49877422	10	5.9	10	74	10	52	33	32	3	30	1.74
49877361--49877423	21	3.0	21	88	2	90	33	33	3	30	1.74
49879457--49879491	18	1.9	18	88	11	54	22	20	0	57	1.41
49880363--49880417	24	2.2	25	87	3	76	10	12	5	70	1.31
49880380--49880444	13	4.8	13	78	14	69	15	7	3	73	1.18
49880363--49880444	25	3.1	26	83	13	89	13	10	4	70	1.30
49880379--49880454	13	5.8	12	73	14	62	14	6	5	73	1.21
49881804--49881861	10	5.7	10	72	11	55	31	12	25	31	1.92
49882937--49882962	4	6.5	4	100	0	52	50	0	0	50	1.00
49884029--49884088	24	2.5	24	74	12	61	50	5	6	38	1.51
49884532--49884568	3	12.3	3	94	0	65	64	0	2	32	1.07
49886664--49886699	17	2.1	18	94	5	65	11	22	16	50	1.77
49892384--49892412	2	14.5	2	100	0	58	48	0	0	51	1.00
49893615--49893659	23	1.9	23	81	4	54	35	2	11	51	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49895996--49896044	23	2.2	22	82	10	55	65	4	0	30	1.11
49896081--49896117	16	2.2	17	90	4	58	72	2	0	24	0.97
49896126--49896167	6	7.0	6	97	0	75	47	0	0	52	1.00
49896545--49896584	9	4.4	9	90	0	62	40	25	10	25	1.86
49896545--49896584	18	2.2	18	100	0	80	40	25	10	25	1.86
49896692--49896716	13	1.9	13	100	0	50	12	0	48	40	1.40
49897790--49897838	25	2.0	25	100	0	98	20	24	4	51	1.65
49915450--49915519	31	2.3	31	80	5	88	41	7	12	38	1.71
49915461--49915604	31	4.8	29	75	13	116	44	5	11	38	1.65
49919024--49919064	15	2.6	16	78	21	50	56	2	4	36	1.34
49922578--49922633	25	2.3	24	76	11	60	46	0	3	50	1.19
49922583--49922630	25	1.9	25	83	8	62	39	0	4	56	1.19
49925208--49925605	126	3.2	124	86	2	528	27	17	18	36	1.93
49925673--49925790	34	3.4	34	74	13	116	46	17	0	35	1.49
49925832--49925866	15	2.2	16	90	5	54	54	37	0	8	1.31
49929560--49929613	19	2.8	19	81	13	58	66	5	0	27	1.13
49929659--49929715	9	6.4	9	81	4	71	24	10	24	40	1.87
49929659--49929715	18	3.2	18	85	2	80	24	10	24	40	1.87
49931974--49932016	14	3.1	14	83	12	54	44	25	2	27	1.66
49932256--49932296	22	1.9	22	95	5	75	60	0	0	39	0.96
49932285--49932396	11	11.2	11	71	24	54	58	0	2	38	1.12
49932269--49932401	41	3.3	39	84	12	164	62	0	2	35	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49932285--49932401	38	3.0	38	86	10	164	60	0	2	36	1.10
49932310--49932373	29	2.2	30	82	2	85	64	0	3	32	1.10
49937352--49937459	54	2.0	54	94	0	189	37	9	16	36	1.81
49951308--49951353	14	3.3	14	77	22	60	45	0	0	54	0.99
49953162--49953190	12	2.5	12	94	5	51	68	0	0	31	0.89
49963275--49963316	22	2.0	22	86	13	61	38	2	21	38	1.67
49969557--49969601	23	2.0	23	82	8	56	57	4	8	28	1.48
49977299--49977361	26	2.3	27	86	8	83	50	1	9	38	1.44
49979396--49979518	3	40.7	3	73	9	90	31	4	4	60	1.34
49979440--49979522	22	3.5	23	73	14	62	31	3	2	62	1.25
49979452--49979502	19	2.5	20	81	9	59	33	3	0	62	1.13
49980412--49980537	51	2.5	51	85	3	166	26	15	30	27	1.95
49981367--49981394	9	3.1	9	100	0	56	46	10	10	32	1.73
49981756--49981816	17	3.4	17	78	15	61	22	27	0	49	1.50
49982527--49982560	16	2.2	15	89	5	50	50	2	0	47	1.16
49988937--49989070	51	2.6	52	77	6	132	40	6	14	38	1.73
49993946--49993989	23	1.9	23	81	9	54	38	2	2	56	1.24
49997481--49997537	9	6.4	9	79	4	62	24	3	0	71	1.01
49997522--49997560	21	1.9	20	84	5	51	28	2	0	69	1.02
50000351--50000519	91	1.9	90	81	3	205	29	18	17	34	1.94
50001683--50001733	17	3.0	17	80	11	59	47	9	1	41	1.48
50007183--50007292	55	2.0	55	98	0	211	26	7	25	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50014742--50014784	20	2.2	20	91	0	68	53	0	16	30	1.43
50017497--50017539	12	3.6	12	77	0	50	30	0	20	48	1.50
50028677--50028727	23	2.2	23	96	0	93	23	27	29	19	1.98
50030404--50030441	18	2.1	18	100	0	76	50	23	5	21	1.69
50049346--50049397	23	2.1	26	82	13	65	63	9	7	19	1.48
50054008--50054036	15	1.9	15	100	0	58	27	17	0	55	1.42
50054038--50054103	24	2.5	27	77	17	68	33	3	3	60	1.27
50056449--50056543	49	1.9	49	95	0	172	17	29	18	33	1.95
50060567--50060601	3	12.0	3	87	6	54	31	2	0	65	1.07
50060572--50060598	14	1.9	14	100	0	54	29	3	0	66	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173