genome.fa.s17.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  101  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31319428--31319762	16	20.9	16	67	20	104	30	2	18	48	1.60
31319384--31319569	9	22.0	9	71	14	112	31	2	18	47	1.60
31319523--31319619	25	4.1	25	70	15	80	29	2	17	50	1.57
31319541--31319651	44	2.5	44	92	2	186	29	0	18	51	1.52
31319635--31319788	9	17.1	9	63	19	54	31	2	18	48	1.62
31319681--31319741	25	2.4	25	80	0	68	31	3	18	47	1.64
31320003--31320036	17	2.0	17	94	0	59	55	0	0	44	0.99
31320032--31320120	18	4.8	18	79	14	101	43	1	11	43	1.47
31320025--31320102	39	2.0	41	94	5	142	46	0	10	43	1.37
31320037--31320129	22	4.4	22	66	21	65	44	1	12	41	1.50
31320030--31320124	39	2.4	39	81	18	117	44	1	11	43	1.47
31320104--31320285	47	4.0	47	79	11	225	44	3	13	38	1.62
31320953--31321004	19	2.7	19	93	0	95	38	19	13	28	1.89
31322976--31323079	38	2.7	38	86	0	145	36	39	3	20	1.71
31322954--31323049	21	4.7	21	74	16	94	37	39	3	19	1.68
31323298--31323331	14	2.4	14	100	0	68	44	0	11	44	1.40
31323306--31323389	32	2.5	33	81	15	91	40	2	8	48	1.46
31324469--31324506	14	2.8	13	88	7	58	44	5	13	36	1.66
31324470--31324544	29	2.6	27	76	12	69	46	5	10	37	1.61
31325482--31325511	14	2.1	14	100	0	60	33	6	36	23	1.81
31328736--31328791	20	2.7	21	81	13	53	69	7	12	10	1.36
31328747--31328791	21	2.1	23	88	12	69	68	8	8	13	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31330897--31330935	13	2.9	13	88	7	60	38	12	5	43	1.65
31330898--31330935	14	2.8	13	88	7	58	39	13	5	42	1.66
31332396--31332817	114	3.7	114	78	3	337	28	25	21	24	1.99
31332537--31332825	115	2.5	115	83	3	316	26	24	21	27	1.99
31334452--31334495	18	2.4	18	80	0	52	50	9	20	20	1.75
31335068--31335284	41	5.3	41	86	0	236	24	20	25	28	1.99
31335381--31335431	26	2.0	26	84	0	66	58	5	11	23	1.55
31335691--31335723	14	2.3	15	94	5	59	30	0	33	36	1.58
31335754--31335797	7	6.3	7	83	0	61	20	0	52	27	1.47
31335754--31335807	21	2.5	20	80	11	54	20	0	48	31	1.50
31337007--31337054	21	2.3	21	88	0	69	20	50	4	25	1.66
31337316--31337365	23	2.1	23	92	3	82	62	20	4	14	1.47
31340930--31341068	42	3.3	43	79	6	126	24	15	24	35	1.95
31352903--31353088	50	3.8	50	75	4	139	28	20	27	22	1.99
31363873--31363938	9	7.4	9	73	21	59	68	0	1	30	0.99
31363883--31363917	11	3.3	11	92	4	54	74	0	2	22	0.95
31363944--31364014	18	3.9	17	80	14	72	61	2	0	35	1.10
31363919--31364008	37	2.6	34	80	18	96	58	2	1	37	1.17
31364070--31364145	29	2.6	29	77	10	82	63	2	2	31	1.22
31364732--31364790	29	2.1	29	81	12	70	38	0	3	57	1.15
31364720--31365096	10	39.6	9	68	18	103	34	2	4	59	1.29
31364796--31364848	28	2.0	25	82	17	63	41	1	0	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31364796--31364848	27	2.0	28	85	10	76	41	1	0	56	1.10
31364795--31364924	29	4.6	27	67	22	72	36	3	2	57	1.27
31364830--31364895	29	2.3	29	82	10	73	33	3	4	59	1.33
31368889--31368940	25	2.1	25	100	0	104	23	3	26	46	1.69
31371248--31371301	29	1.9	28	88	7	83	24	14	20	40	1.90
31371514--31371580	22	3.0	22	84	0	89	34	23	1	40	1.64
31371589--31371639	22	2.3	22	83	9	68	33	31	0	35	1.58
31371538--31371636	52	1.9	52	87	8	148	31	29	1	38	1.64
31371673--31371730	29	2.0	28	87	9	82	39	0	3	56	1.16
31371676--31371737	29	2.1	29	82	11	74	38	0	3	58	1.15
31372819--31372843	7	3.6	7	100	0	50	28	0	12	60	1.32
31374011--31374128	23	4.8	23	86	13	173	48	20	0	31	1.50
31374022--31374460	29	15.1	29	82	11	480	46	23	0	29	1.54
31374179--31374422	35	7.7	36	78	17	133	47	23	0	28	1.55
31374285--31374466	28	6.7	23	70	29	112	47	22	0	30	1.52
31374250--31374460	57	3.7	57	96	1	386	48	22	0	28	1.51
31377689--31377970	126	2.2	125	87	4	399	32	21	15	29	1.95
31379643--31379677	10	3.2	11	88	12	54	57	0	0	42	0.99
31379898--31379939	20	2.1	20	86	0	57	64	7	4	23	1.38
31379941--31379981	22	1.9	22	90	5	66	60	4	0	34	1.18
31379938--31379987	22	2.3	21	82	3	64	58	4	0	38	1.17
31381672--31381899	44	5.2	44	70	6	185	25	24	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31381667--31381942	87	3.2	87	92	1	455	24	24	22	28	1.99
31381723--31381942	43	5.1	43	67	5	165	24	24	24	26	2.00
31381881--31382465	88	6.6	88	86	1	706	21	23	26	29	1.99
31381982--31382119	44	3.2	42	70	8	123	16	24	30	28	1.97
31381905--31382465	175	3.2	176	84	1	730	21	22	27	28	1.99
31381949--31382457	263	1.9	265	88	0	770	21	22	27	29	1.99
31382400--31382522	57	2.1	58	85	7	171	19	20	23	36	1.95
31388634--31388678	19	2.4	19	85	3	56	80	4	2	13	0.97
31388634--31388690	8	6.6	8	77	15	51	80	5	1	12	0.95
31388733--31388766	10	3.1	11	87	12	52	55	0	0	44	0.99
31388793--31388831	18	2.2	18	90	9	62	69	0	5	25	1.09
31389032--31389078	17	2.9	17	78	9	55	63	6	2	27	1.30
31399826--31399891	27	2.5	26	82	7	87	42	19	16	21	1.89
31406305--31406429	67	1.9	66	88	5	189	41	11	20	26	1.86
31406430--31406491	27	2.2	28	80	5	72	59	1	1	37	1.17
31414736--31414793	15	3.9	14	80	15	55	65	1	1	31	1.13
31414736--31414776	3	13.7	3	94	0	73	65	0	2	31	1.05
31416233--31417010	99	7.9	97	85	4	867	22	20	24	32	1.97
31429595--31429652	15	3.9	14	80	15	55	65	1	1	31	1.13
31429595--31429635	3	13.7	3	94	0	73	65	0	2	31	1.05
31430856--31430914	30	2.0	30	93	0	100	28	15	8	47	1.74
31443082--31443121	20	2.0	20	90	0	62	30	15	15	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31448163--31448234	22	3.2	22	81	13	83	41	4	0	54	1.20
31448202--31448238	11	3.4	11	88	0	56	45	0	0	54	1.00
31456325--31456357	17	1.9	17	93	0	57	63	0	3	33	1.10
31467076--31467395	131	2.4	131	91	0	523	29	21	24	24	1.99
31467374--31467801	216	2.0	217	91	0	687	29	18	25	26	1.98
31467726--31467837	44	2.5	45	81	4	111	29	25	22	23	1.99
31468429--31468485	15	3.5	16	88	9	71	73	1	0	24	0.92
31468445--31468485	15	2.7	15	96	3	73	75	0	0	24	0.80
31489983--31490365	195	2.0	197	83	3	495	31	10	17	41	1.83
31494114--31494146	17	1.9	17	93	0	57	48	3	3	45	1.33
31494235--31494460	110	2.0	110	95	0	407	42	8	16	32	1.79
31495267--31496939	820	2.0	827	94	3	2946	32	10	18	39	1.83
31499508--31499538	16	2.0	16	93	6	55	45	0	9	45	1.36
31505865--31505925	32	1.9	32	86	0	86	32	16	18	32	1.93
31505983--31506043	21	2.9	20	74	13	52	68	3	0	27	1.05
31505995--31506040	17	2.6	17	82	6	56	71	4	0	23	1.03
31506291--31506340	13	4.0	13	78	17	52	34	2	0	64	1.05
31508057--31508089	6	5.5	6	92	0	57	15	18	12	54	1.71
31512996--31513033	19	2.1	18	85	14	51	36	2	5	55	1.37
31513639--31513702	26	2.5	26	82	5	67	64	9	4	21	1.42
31521040--31521072	18	1.9	17	88	11	50	30	0	12	57	1.35
31527263--31527317	12	4.5	12	81	16	60	21	3	0	74	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31527472--31527531	22	2.8	21	79	5	57	25	46	10	18	1.79
31528440--31528628	101	1.8	100	81	7	227	28	15	24	31	1.96
31528616--31528688	16	4.8	14	77	14	65	78	1	4	16	0.98
31528625--31528667	11	4.1	11	82	11	54	76	2	0	20	0.89
31528616--31528683	7	9.0	7	74	25	50	79	1	2	16	0.93
31529240--31529274	15	2.4	15	90	4	54	48	0	8	42	1.33
31533169--31533227	24	2.4	24	83	8	66	37	18	20	23	1.94
31535341--31535444	52	2.0	52	94	1	183	32	13	7	46	1.72
31535341--31535465	52	2.4	52	86	6	148	30	12	9	48	1.72
31545532--31545582	24	2.2	24	77	22	56	33	0	5	60	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173