genome.fa.s17.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  141  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42795973--42796020	24	2.0	24	100	0	96	16	45	8	29	1.76
42802276--42802301	5	5.2	5	100	0	52	38	0	0	61	0.96
42802926--42802990	29	2.3	29	82	10	73	26	4	1	67	1.18
42824272--42824371	42	2.4	42	94	0	173	27	28	10	35	1.89
42825242--42825275	17	2.1	17	88	5	52	32	17	0	50	1.47
42830187--42830337	42	3.6	42	82	3	162	44	19	21	15	1.87
42830235--42830303	21	3.3	21	70	8	59	47	20	17	14	1.82
42845798--42845833	7	5.1	7	100	0	72	30	0	27	41	1.56
42846633--42846671	20	2.0	20	94	0	69	28	12	7	51	1.67
42848404--42848613	104	2.0	103	96	0	384	39	18	20	22	1.93
42848357--42848583	52	4.5	51	66	19	141	35	19	19	25	1.96
42850057--42850373	97	3.2	98	72	7	260	37	14	20	27	1.92
42852318--42852500	96	1.9	97	83	7	239	42	3	15	38	1.66
42852545--42853087	126	4.3	126	90	0	843	32	18	22	27	1.97
42858537--42858567	12	2.6	12	100	0	62	51	6	29	12	1.65
42858518--42858578	12	5.5	11	84	5	52	49	3	27	19	1.64
42860531--42860566	18	1.9	18	88	5	54	58	2	0	38	1.13
42866930--42866954	6	4.2	6	100	0	50	48	0	0	52	1.00
42884814--42884850	14	2.7	14	80	19	51	72	0	13	13	1.11
42885656--42885707	16	3.2	15	84	10	59	82	1	5	9	0.90
42885619--42885706	26	3.4	25	70	13	63	76	4	7	11	1.15
42887571--42887603	13	2.4	14	95	5	59	63	15	0	21	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42891458--42891510	24	2.3	23	83	3	61	47	5	0	47	1.26
42893298--42893341	19	2.2	21	84	15	58	9	31	0	59	1.29
42894602--42894695	22	4.3	22	69	8	75	23	22	18	36	1.95
42901212--42901329	36	3.3	36	84	4	141	34	16	21	27	1.94
42901212--42901337	18	7.0	18	81	0	117	35	17	19	26	1.94
42903032--42903603	286	2.0	286	98	0	1108	28	19	16	35	1.94
42904321--42904364	21	2.0	22	91	4	72	13	15	6	63	1.49
42910801--42910834	16	2.0	18	88	11	54	23	0	0	76	0.79
42911845--42911898	24	2.3	23	80	3	63	46	3	3	46	1.38
42912128--42912167	21	1.9	21	94	0	71	60	0	0	40	0.97
42912128--42912176	11	4.3	12	75	19	52	59	0	0	40	0.98
42912141--42912272	39	3.3	40	90	5	214	62	0	3	34	1.10
42916358--42916416	30	2.0	30	100	0	118	44	18	6	30	1.76
42924792--42924909	62	1.9	62	87	3	175	22	29	23	24	1.99
42930288--42930332	21	2.1	21	83	4	54	24	28	28	17	1.97
42941537--42941609	31	2.4	31	86	6	96	20	10	23	45	1.83
42944406--42944440	17	2.1	17	100	0	70	20	17	5	57	1.60
42946669--42946702	18	1.9	18	88	5	52	8	26	5	58	1.51
42948130--42948167	13	2.7	14	88	8	51	50	2	2	44	1.30
42948652--42948728	37	2.1	37	83	9	95	40	2	1	55	1.22
42948882--42948907	9	2.9	9	100	0	52	30	34	0	34	1.58
42951815--42951899	28	3.1	28	75	1	100	32	15	17	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42954432--42954490	31	1.9	31	89	0	91	45	11	5	37	1.63
42959915--42959955	21	2.0	21	90	9	66	4	17	0	78	0.93
42968722--42968763	19	2.2	20	82	4	50	26	11	4	57	1.54
42975778--42975834	20	2.8	20	74	10	62	35	24	28	12	1.91
42975820--42975885	20	3.3	20	72	16	64	21	22	39	16	1.92
42975830--42975894	20	3.2	20	73	16	62	20	20	38	21	1.94
42975819--42975938	40	3.0	40	80	8	104	26	20	34	18	1.96
42975877--42975954	40	2.0	40	87	5	113	32	19	29	19	1.96
42990122--42990248	59	2.1	62	82	7	163	44	19	10	25	1.82
42993193--42993244	20	2.7	20	77	14	63	44	0	1	53	1.11
42995907--42996005	39	2.5	39	85	3	128	41	21	9	28	1.83
43004079--43004130	12	4.4	12	78	2	52	59	1	1	36	1.19
43010213--43010253	21	2.0	21	81	18	50	31	19	26	21	1.97
43013176--43013241	27	2.4	27	85	7	80	36	3	0	60	1.12
43014677--43014714	19	2.0	19	90	10	60	50	21	7	21	1.74
43014702--43014778	14	5.0	15	71	20	52	42	14	9	33	1.77
43014718--43014757	20	2.0	20	90	0	62	50	12	10	27	1.72
43014706--43014772	34	1.9	35	90	3	109	46	13	8	31	1.74
43024983--43025022	21	1.9	21	85	10	55	45	10	5	40	1.60
43024983--43025026	22	2.0	21	83	12	54	47	11	4	36	1.60
43028105--43028158	17	3.1	16	77	15	54	11	5	14	68	1.37
43028116--43028161	23	2.0	23	82	0	56	15	4	17	63	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43038698--43038767	33	2.1	33	94	0	122	40	14	10	35	1.79
43039321--43039511	51	3.8	51	76	8	210	29	26	18	25	1.98
43039319--43039501	101	1.8	102	89	3	289	30	25	19	25	1.98
43040761--43041002	122	2.0	122	86	3	335	30	16	21	31	1.95
43042232--43042360	52	2.5	51	85	6	163	26	13	32	27	1.93
43042232--43042360	51	2.5	52	82	8	165	26	13	32	27	1.93
43044273--43044328	22	2.5	22	91	0	94	58	14	12	14	1.63
43054280--43054329	26	1.9	26	95	0	91	30	32	24	14	1.94
43054382--43054431	26	1.9	26	95	0	91	30	34	24	12	1.91
43054247--43054509	102	2.6	103	90	3	413	30	30	20	19	1.97
43054844--43054901	30	1.9	30	85	0	80	31	24	6	37	1.82
43061296--43061377	41	2.0	41	87	0	119	37	29	9	23	1.87
43069706--43069755	20	2.6	19	81	6	64	50	26	12	12	1.74
43072708--43072732	12	2.1	12	100	0	50	68	0	0	32	0.90
43078394--43078443	27	2.0	25	82	17	61	70	2	18	10	1.25
43078384--43078469	23	3.6	22	75	24	61	70	1	12	15	1.22
43078508--43078547	21	1.9	21	85	10	55	45	0	0	55	0.99
43078604--43078637	16	2.1	16	88	0	50	26	5	0	67	1.13
43084531--43084582	28	1.9	26	92	7	86	44	25	0	30	1.54
43084531--43084582	13	3.8	13	90	9	86	44	25	0	30	1.54
43090008--43090208	98	2.1	98	99	0	393	30	18	19	31	1.96
43090867--43090905	11	3.4	11	80	13	51	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43090871--43090924	28	1.9	28	85	14	76	51	0	1	46	1.11
43090885--43090922	14	2.4	17	87	12	55	47	0	0	52	1.00
43091131--43091169	20	2.0	20	95	5	71	51	2	5	41	1.38
43091218--43091250	10	3.4	10	87	4	50	72	0	9	18	1.10
43091297--43091327	6	5.2	6	100	0	62	83	0	16	0	0.64
43091695--43091728	17	1.9	18	88	5	52	41	0	23	35	1.55
43092026--43092063	18	2.1	18	85	9	51	42	0	18	39	1.50
43092140--43092202	23	2.9	23	76	11	78	15	17	26	39	1.90
43096953--43096993	15	2.7	15	88	7	57	24	4	4	65	1.32
43098648--43098706	29	2.0	29	83	6	73	40	3	5	50	1.41
43099798--43099868	29	2.4	29	86	9	83	32	14	7	46	1.71
43099899--43099926	14	2.0	14	100	0	56	64	21	0	14	1.29
43100032--43100094	22	2.8	22	83	7	74	50	25	0	23	1.49
43100040--43100094	22	2.5	22	85	5	76	47	25	0	27	1.52
43106340--43106385	3	15.3	3	81	0	56	32	2	4	60	1.28
43106544--43106605	28	2.2	28	75	8	65	35	9	0	54	1.33
43106572--43106598	8	3.4	8	100	0	54	40	11	0	48	1.39
43106463--43106622	50	3.2	51	70	18	129	39	8	2	50	1.46
43106467--43106629	54	3.2	52	71	19	146	40	8	1	49	1.44
43109854--43110021	60	2.8	60	76	4	176	39	4	16	39	1.68
43110720--43111143	125	3.4	123	83	4	546	29	17	21	30	1.96
43112195--43112226	9	3.7	9	95	4	57	56	9	0	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43112250--43112379	70	1.9	69	93	1	224	52	11	0	36	1.38
43112277--43112335	25	2.4	25	91	0	91	47	11	0	40	1.40
43114132--43114174	12	3.8	12	80	20	56	41	0	30	27	1.56
43116323--43116516	55	3.5	55	96	0	361	25	8	16	49	1.73
43116618--43116650	13	2.5	13	95	0	57	54	21	6	18	1.64
43116654--43116682	8	3.6	8	100	0	58	79	0	0	20	0.74
43117310--43117438	10	13.4	9	70	16	73	64	0	2	32	1.12
43117309--43117438	19	6.7	19	73	13	81	64	0	2	32	1.11
43117608--43117786	9	18.4	9	68	14	72	29	7	2	61	1.35
43117608--43117694	39	2.2	38	78	9	95	29	6	2	60	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173