genome.fa.s17.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  148  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44804191--44804228	20	1.9	19	89	5	58	57	2	2	36	1.26
44804227--44804299	30	2.7	27	78	17	80	58	0	2	38	1.12
44808533--44808558	9	2.9	9	100	0	52	23	11	11	53	1.69
44813249--44813298	22	2.3	22	78	0	64	28	30	16	26	1.96
44819110--44819880	407	1.9	411	86	2	1104	37	19	14	29	1.91
44821094--44821141	18	2.8	16	74	20	51	47	2	0	50	1.12
44821154--44821182	12	2.3	13	94	5	51	55	0	6	37	1.27
44823524--44823557	14	2.4	14	100	0	68	67	0	0	32	0.91
44825796--44825858	30	2.0	31	81	6	74	34	1	14	49	1.53
44830162--44830195	14	2.4	14	100	0	68	32	0	0	67	0.91
44834126--44834173	20	2.4	20	96	0	87	29	20	16	33	1.95
44836515--44836584	3	23.3	3	85	0	86	58	1	7	32	1.34
44836665--44836721	23	2.7	21	75	21	64	70	1	1	26	1.07
44836613--44836726	47	2.3	52	82	11	132	66	1	2	28	1.15
44838318--44838643	44	7.2	44	73	11	223	30	21	18	30	1.97
44838215--44838669	227	2.0	227	90	1	716	30	20	17	31	1.96
44838737--44838850	51	2.2	51	85	0	156	29	23	14	32	1.94
44838774--44838937	87	1.9	87	81	0	202	31	22	15	31	1.95
44838973--44839011	21	1.9	20	94	5	69	17	28	12	41	1.87
44838724--44839366	261	2.5	261	87	0	926	27	23	16	31	1.96
44838977--44839020	21	2.1	21	82	0	52	20	27	9	43	1.82
44838882--44839367	123	3.8	123	73	10	438	27	24	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44840647--44840678	15	2.1	15	94	0	55	0	21	0	78	0.76
44845410--44845523	47	2.3	52	80	11	123	66	1	2	28	1.15
44847737--44847896	49	3.2	48	76	11	146	20	12	31	35	1.90
44849475--44849530	24	2.2	26	81	9	71	62	7	3	26	1.38
44853737--44853770	16	2.1	16	100	0	68	44	23	14	17	1.86
44868570--44868703	68	2.0	68	82	2	162	42	2	3	50	1.35
44870890--44870960	34	2.1	34	97	0	133	36	19	16	26	1.94
44882213--44882286	33	2.2	33	80	4	87	21	20	10	47	1.80
44882263--44882374	33	3.4	33	76	12	104	19	26	12	41	1.87
44882384--44882535	63	2.4	63	91	2	234	19	26	17	36	1.94
44885157--44885481	161	2.0	161	97	0	614	26	18	19	36	1.95
44893957--44894084	57	2.3	55	84	4	166	40	6	17	35	1.75
44909400--44909671	50	5.7	46	80	9	287	26	20	31	20	1.98
44909403--44909703	95	3.1	94	86	8	374	26	20	30	21	1.98
44911517--44911568	6	8.5	6	91	4	86	15	1	0	82	0.75
44916319--44916383	27	2.4	27	92	0	103	30	32	15	21	1.94
44930907--44931006	31	3.3	30	77	6	76	39	5	9	47	1.57
44933123--44933178	23	2.2	25	79	20	64	48	0	3	48	1.19
44935440--44935480	21	2.0	21	85	0	55	60	2	9	26	1.40
44943115--44943290	96	1.8	98	83	2	239	29	26	21	23	1.99
44943065--44943496	209	2.1	207	87	5	622	30	25	19	24	1.98
44943973--44944014	22	2.0	21	85	4	57	23	2	23	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44944093--44944155	7	9.0	7	83	0	54	17	1	36	44	1.59
44944094--44944141	14	3.4	14	76	0	60	14	2	39	43	1.57
44944093--44944147	28	2.0	28	88	0	83	14	1	38	45	1.56
44944095--44944155	28	2.2	28	81	0	77	18	1	34	45	1.59
44944291--44944320	15	2.0	15	93	0	51	63	0	3	33	1.11
44944527--44944564	20	1.9	20	94	0	67	34	0	7	57	1.28
44945084--44945127	19	2.2	20	88	4	63	27	43	2	27	1.67
44945484--44945570	6	14.5	6	100	0	174	33	0	16	50	1.45
44952242--44952281	21	1.9	21	89	0	62	30	12	52	5	1.60
44952635--44952943	43	7.2	43	80	4	327	26	20	29	23	1.99
44957619--44957673	25	2.1	27	80	12	62	69	3	5	21	1.25
44962513--44962559	20	2.3	20	92	0	76	23	19	19	38	1.93
44964852--44964959	51	2.1	51	91	0	171	31	14	11	42	1.81
44968131--44968173	20	2.1	20	83	12	52	4	18	23	53	1.63
44972418--44972705	150	1.9	150	100	0	576	29	9	16	44	1.79
44978263--44978287	13	1.9	13	100	0	50	28	8	16	48	1.74
44986402--44987026	89	7.0	89	91	1	885	31	17	23	27	1.97
44987383--44987478	11	8.8	11	75	18	85	38	2	0	59	1.09
44987335--44987449	41	2.9	40	91	5	173	34	2	0	62	1.09
44987383--44987485	52	1.9	53	92	3	172	39	1	0	58	1.09
44987335--44987451	38	3.0	38	89	7	173	35	2	0	61	1.10
44992018--44992055	19	2.1	19	85	5	51	57	0	7	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44993581--44993623	18	2.4	18	92	0	68	20	6	46	25	1.76
44994272--44994358	23	3.7	23	83	4	95	29	11	17	41	1.84
44994272--44994340	24	2.9	24	84	2	95	27	11	17	43	1.83
44995596--44995621	7	3.7	7	100	0	52	26	26	30	15	1.96
45009448--45009515	34	2.0	34	82	5	84	22	23	22	32	1.98
45021633--45021678	14	3.3	14	82	11	58	32	4	0	63	1.14
45026187--45026232	22	2.1	22	84	8	58	41	2	8	47	1.46
45028188--45028413	43	5.4	41	76	9	197	36	25	15	23	1.93
45028179--45028411	85	2.8	85	88	3	319	36	24	15	23	1.94
45028387--45028439	26	2.0	26	88	0	79	24	33	22	18	1.97
45033458--45033486	8	3.8	8	90	9	51	65	24	0	10	1.23
45041924--45041968	20	2.3	20	88	3	65	20	6	4	68	1.29
45042834--45042949	20	5.8	19	73	10	81	17	18	10	54	1.70
45042832--45042951	40	3.0	40	76	9	127	18	17	10	54	1.70
45044663--45044760	34	2.9	35	75	6	94	44	15	12	27	1.82
45045126--45045214	28	3.2	27	82	9	108	55	11	13	20	1.68
45048855--45048915	31	2.0	31	90	0	95	44	8	8	39	1.64
45058898--45058944	19	2.4	20	89	7	78	29	8	10	51	1.66
45060295--45060374	32	2.5	32	83	4	99	52	18	2	26	1.58
45081410--45081521	25	4.6	25	69	17	92	31	19	25	24	1.98
45088335--45088381	24	2.0	24	91	8	78	29	19	25	25	1.98
45089150--45089174	13	1.9	13	100	0	50	40	4	16	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45096443--45096549	9	11.4	10	72	19	56	31	0	1	65	1.10
45096447--45096532	19	4.7	18	77	21	81	30	1	2	66	1.12
45096490--45096523	17	2.1	16	88	5	50	35	2	0	61	1.11
45096506--45096549	9	4.7	9	83	10	61	36	0	0	63	0.95
45096502--45096544	20	2.1	21	83	12	63	34	0	0	65	0.93
45096446--45096549	19	5.6	19	74	20	69	31	0	1	65	1.10
45096576--45096637	32	1.9	32	83	0	79	38	12	17	30	1.88
45097953--45098009	17	3.4	16	72	13	53	38	5	1	54	1.33
45097955--45098044	33	2.8	33	88	3	121	43	4	1	51	1.29
45097965--45098053	31	2.8	32	87	3	117	43	5	1	49	1.33
45103004--45103041	15	2.6	15	87	4	60	63	0	10	26	1.27
45103230--45103286	14	3.9	15	73	17	57	56	1	8	33	1.41
45115858--45115905	17	3.0	15	82	14	60	70	4	0	25	1.04
45117457--45117499	17	2.5	18	81	11	54	39	0	2	58	1.11
45117506--45117546	13	3.1	13	92	3	64	34	0	7	58	1.26
45117507--45117825	144	2.2	146	87	6	470	31	1	13	53	1.49
45119929--45120308	190	2.0	190	86	0	535	27	27	16	28	1.97
45121501--45121561	21	2.6	22	77	15	61	49	11	4	34	1.61
45121816--45121879	29	2.2	29	81	8	76	23	20	3	53	1.60
45122366--45122429	27	2.4	25	82	14	76	26	18	4	50	1.67
45122945--45123021	38	2.0	38	87	9	113	35	1	0	63	1.03
45122980--45123041	27	2.3	27	88	2	90	35	0	1	62	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45127140--45127326	87	2.1	87	83	8	238	38	14	21	25	1.91
45127191--45127326	29	4.7	28	72	10	103	38	14	20	26	1.91
45129041--45129103	26	2.5	26	89	2	92	39	19	22	19	1.92
45129091--45129199	25	4.5	24	72	9	69	33	17	26	22	1.96
45129161--45129212	26	2.0	26	85	3	70	34	17	25	23	1.96
45129167--45129234	26	2.7	25	79	4	73	36	20	22	20	1.95
45132381--45132449	31	2.4	27	74	21	68	49	5	5	39	1.51
45135046--45135086	20	2.0	21	85	4	57	36	39	4	19	1.73
45135435--45135847	133	3.1	134	80	6	489	30	21	15	33	1.94
45136666--45136763	28	3.5	29	73	17	82	47	0	4	47	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173