genome.fa.s17.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  58  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16436213--16436357	41	3.6	39	88	1	191	32	20	22	24	1.98
16436213--16436357	40	3.6	40	88	1	193	32	20	22	24	1.98
16436332--16436383	26	2.0	25	92	3	86	19	19	34	26	1.95
16441772--16441817	22	2.1	22	84	8	58	56	17	10	15	1.67
16453108--16453229	37	3.3	36	78	5	118	29	18	18	32	1.95
16453139--16453243	37	2.8	36	75	11	104	29	19	18	33	1.95
16454745--16454836	36	2.6	35	83	8	114	25	21	20	32	1.98
16455365--16455410	23	2.0	24	83	8	60	45	2	23	28	1.65
16456719--16456770	14	3.7	14	71	0	50	28	21	15	34	1.94
16456714--16456782	28	2.5	28	76	9	77	27	20	15	36	1.93
16456788--16456837	26	1.9	26	83	0	64	26	20	14	40	1.90
16460938--16461167	121	1.9	121	98	0	442	25	21	12	40	1.88
16462376--16462600	113	2.0	113	86	3	319	34	21	12	31	1.91
16463589--16463630	12	3.5	12	86	0	66	2	33	26	38	1.69
16465373--16465414	18	2.3	18	88	8	59	30	21	23	23	1.99
16465418--16465488	35	2.0	35	83	0	88	35	28	16	19	1.94
16469932--16469982	17	2.9	17	88	2	66	33	27	23	15	1.95
16475499--16475547	21	2.3	21	86	6	64	73	6	0	20	1.04
16476697--16476765	35	1.9	35	85	8	95	55	4	2	37	1.35
16481233--16481277	22	2.1	22	87	4	65	22	31	0	46	1.52
16483711--16484015	43	7.2	43	80	2	294	27	30	17	25	1.97
16483717--16483992	85	3.2	85	80	3	288	26	30	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16483717--16484015	128	2.3	127	82	1	337	26	30	17	25	1.97
16488102--16488153	7	7.4	7	84	0	68	34	48	0	17	1.48
16488095--16488156	21	2.9	21	82	2	70	33	46	0	19	1.50
16488703--16489009	41	7.5	41	91	2	451	28	26	21	23	1.99
16491989--16492089	42	2.4	42	83	3	114	27	22	24	24	2.00
16496759--16496789	4	8.0	4	92	7	55	74	0	0	25	0.82
16497092--16497187	31	3.1	31	95	3	174	44	13	9	32	1.76
16502815--16503058	69	3.6	69	84	4	332	37	21	20	21	1.95
16508469--16508551	20	4.2	20	72	14	73	37	14	31	16	1.89
16511289--16511671	127	3.0	128	96	1	705	32	7	15	44	1.74
16520004--16520034	15	2.1	15	93	0	53	35	6	22	35	1.80
16520131--16520177	20	2.4	20	82	10	53	61	4	6	27	1.39
16521304--16521389	10	8.8	10	73	19	74	56	2	2	38	1.25
16521304--16521334	11	2.9	11	95	4	55	61	0	0	38	0.96
16521310--16521389	29	2.8	28	76	12	83	58	2	2	36	1.25
16521304--16521380	9	8.0	9	77	13	66	57	1	2	38	1.21
16521819--16521858	19	2.1	19	85	0	53	40	0	0	60	0.97
16522047--16522092	22	2.1	22	84	15	60	36	0	4	58	1.18
16526206--16526248	18	2.4	18	88	0	59	23	25	9	41	1.84
16529747--16530009	125	2.1	126	84	4	336	31	14	16	36	1.89
16530069--16530177	34	3.3	33	83	6	148	44	14	0	40	1.45
16533031--16533092	30	2.1	30	87	0	88	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16535533--16535565	6	5.7	6	92	7	59	54	0	27	18	1.44
16535533--16535565	11	2.8	12	95	4	59	54	0	27	18	1.44
16543526--16543558	15	2.4	14	90	10	50	0	18	0	81	0.68
16547944--16548681	37	19.3	37	70	16	311	36	15	22	25	1.93
16547944--16548242	73	4.0	73	79	10	264	35	17	21	26	1.94
16548251--16548673	35	11.7	35	76	7	321	37	14	23	24	1.93
16548114--16548374	137	1.9	137	82	4	330	39	15	20	24	1.92
16548159--16548344	102	1.8	102	82	4	241	39	13	22	24	1.90
16548256--16548681	73	5.9	73	75	9	336	36	14	23	25	1.93
16547944--16548591	146	4.4	145	76	10	517	38	15	21	25	1.92
16548827--16548898	36	2.0	36	86	0	99	40	11	23	25	1.87
16549842--16549875	15	2.3	15	90	5	52	11	2	11	73	1.20
16549908--16549979	34	2.1	34	82	10	85	45	11	22	20	1.82
16552221--16552435	29	7.4	29	76	8	213	35	12	27	25	1.91
16552221--16552435	87	2.5	87	90	1	324	35	12	27	25	1.91
16552221--16552469	87	2.9	87	84	4	272	35	12	27	24	1.91
16552330--16552464	58	2.3	58	88	2	200	37	11	26	25	1.89
16552330--16552525	58	3.4	58	80	7	191	37	9	26	27	1.87
16557453--16557549	12	8.4	12	72	19	57	55	3	2	39	1.27
16557455--16557507	20	2.8	19	81	18	67	54	1	1	41	1.22
16557422--16557549	17	7.5	17	68	17	59	53	2	3	40	1.29
16564948--16565051	52	2.0	52	90	0	163	44	12	14	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16574082--16574128	23	2.0	23	84	8	60	44	0	14	40	1.46
16584654--16584718	34	1.9	33	81	9	78	36	9	10	43	1.72
16584669--16584708	20	2.0	20	95	0	71	32	10	12	45	1.75
16585920--16585968	22	2.3	21	92	3	80	53	16	8	22	1.69
16587284--16587327	6	7.2	6	89	5	70	38	0	61	0	0.96
16587287--16587325	18	2.2	18	100	0	78	35	0	64	0	0.94
16591986--16592164	27	6.6	27	82	6	211	40	19	20	20	1.92
16591966--16592132	54	3.1	54	85	5	239	40	17	19	22	1.92
16591966--16592139	81	2.1	81	85	2	242	41	18	18	21	1.90
16592335--16592405	26	2.7	26	80	0	70	19	23	18	38	1.93
16592518--16592604	28	3.0	28	81	6	102	25	24	21	28	1.99
16592541--16592603	30	2.1	30	90	0	99	26	26	20	25	1.99
16592541--16592634	30	3.0	30	83	9	91	27	25	22	24	2.00
16592886--16592954	32	2.2	32	94	0	120	39	5	18	36	1.75
16599319--16599594	54	5.1	55	84	5	316	41	19	18	19	1.90
16599345--16599591	81	3.1	80	86	2	318	41	19	18	19	1.90
16599319--16599595	27	10.3	27	82	9	282	41	19	18	19	1.91
16600291--16600354	32	2.0	32	96	0	119	39	6	20	34	1.78
16605116--16605193	32	2.5	32	87	2	104	38	21	20	19	1.94
16605193--16605246	26	2.1	26	82	0	63	37	22	20	20	1.95
16605367--16605422	24	2.3	24	90	0	94	51	21	8	17	1.72
16605601--16605838	27	8.8	27	81	9	211	24	11	20	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16605601--16605824	54	4.2	53	82	5	279	25	11	19	43	1.84
16605601--16605824	81	2.8	81	82	5	301	25	11	19	43	1.84
16612382--16612489	44	2.5	45	81	15	131	27	27	19	25	1.99
16618110--16618148	12	3.2	12	85	0	51	20	23	5	51	1.67
16618398--16618640	50	4.7	50	82	4	245	21	26	22	29	1.99
16623158--16623274	44	2.7	44	82	11	143	27	29	19	23	1.98
16624087--16624116	6	5.2	6	92	8	53	0	16	0	83	0.65
16627891--16627969	29	2.8	29	82	5	81	17	25	17	39	1.92
16628573--16628815	42	5.8	42	80	4	181	28	25	20	25	1.99
16628581--16628815	43	5.6	42	82	5	224	27	25	20	25	1.99
16628631--16628864	43	5.5	42	80	7	204	26	26	19	28	1.99
16629248--16629294	21	2.2	21	88	0	67	8	44	10	36	1.70
16632292--16632705	9	48.4	9	67	18	181	35	2	18	43	1.63
16632297--16632550	25	10.4	25	70	20	123	35	1	16	45	1.59
16632305--16632624	16	19.1	16	69	16	143	35	2	16	45	1.60
16632320--16632490	92	1.8	93	87	7	258	35	2	17	44	1.62
16632514--16632591	41	1.9	41	91	0	129	39	3	14	42	1.63
16632387--16632703	25	12.6	25	76	7	207	35	2	18	43	1.64
16633498--16633570	21	3.3	21	68	17	67	58	6	5	28	1.46
16633965--16634032	19	3.8	18	86	9	95	45	19	4	30	1.70
16636168--16636209	14	2.8	16	79	17	54	45	42	0	11	1.41
16636641--16636909	113	2.4	111	79	9	258	34	17	19	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16640245--16640304	20	2.8	21	73	12	52	40	21	11	26	1.88
16640796--16640853	25	2.3	25	93	0	98	24	24	1	50	1.59
16641966--16642001	9	4.0	9	86	13	56	0	25	0	75	0.81
16643815--16643868	24	2.2	25	83	9	76	53	3	3	38	1.36
16644792--16644889	46	2.1	46	86	3	135	33	10	27	28	1.89
16652100--16652130	12	2.6	12	94	0	53	6	29	41	22	1.78
16653901--16654125	40	5.7	40	87	5	305	24	22	27	25	2.00
16653901--16654158	119	2.2	119	81	6	292	25	21	27	25	1.99
16661150--16661373	40	5.7	37	84	6	207	25	22	27	25	2.00
16661150--16661373	79	2.8	80	87	4	312	25	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173