genome.fa.s17.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  91  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28538421--28538637	79	2.7	77	84	6	267	34	15	26	23	1.95
28539023--28539063	20	2.0	20	85	4	55	39	26	2	31	1.70
28544899--28544949	21	2.5	20	77	3	57	31	1	5	60	1.31
28545648--28545687	21	1.9	21	85	10	55	20	32	22	25	1.98
28545677--28545732	21	2.6	22	83	10	64	17	26	25	30	1.97
28545702--28545748	21	2.3	21	85	7	62	17	31	19	31	1.94
28545836--28545880	20	2.3	20	88	7	67	31	8	13	46	1.74
28547538--28547854	30	11.1	29	70	13	194	37	17	18	26	1.93
28547538--28547843	111	2.7	112	81	5	357	36	18	18	26	1.94
28547538--28547854	59	5.6	57	72	13	233	37	17	18	26	1.93
28552943--28553014	32	2.3	32	77	15	78	44	22	8	25	1.80
28563730--28563786	25	2.3	25	87	0	78	33	19	21	26	1.97
28566729--28566765	18	2.1	18	100	0	74	29	21	21	27	1.99
28575841--28575866	13	2.0	13	100	0	52	23	38	30	7	1.83
28583554--28583591	20	1.9	20	94	0	67	18	10	21	50	1.76
28586572--28586684	33	3.4	32	79	6	118	17	23	12	46	1.82
28586596--28586697	33	3.1	33	80	5	118	15	25	12	46	1.82
28597023--28597089	30	2.2	30	83	0	80	22	20	25	31	1.98
28598652--28598687	16	2.2	16	100	0	72	58	5	11	25	1.54
28600059--28600100	9	4.4	9	83	16	50	38	26	0	35	1.57
28603397--28603511	46	2.5	46	91	0	176	33	26	19	21	1.97
28603397--28603510	23	5.0	23	81	2	131	33	26	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28605834--28605891	9	6.4	9	91	0	98	43	20	10	25	1.84
28605931--28605955	11	2.3	11	100	0	50	16	0	16	68	1.22
28607105--28607186	42	2.0	42	82	4	103	30	23	14	31	1.94
28607146--28607238	47	2.0	48	82	2	116	32	26	16	24	1.96
28609828--28609939	46	2.4	46	90	0	179	31	26	20	21	1.98
28609825--28609938	23	5.0	23	82	2	149	31	26	21	21	1.98
28610165--28610203	18	2.2	17	86	13	53	46	20	0	33	1.51
28613564--28613589	3	8.7	3	100	0	52	0	34	0	65	0.93
28615379--28615414	3	12.0	3	93	0	63	33	2	0	63	1.08
28617467--28617499	14	2.4	14	90	5	50	48	33	0	18	1.48
28618599--28618635	6	6.2	6	93	0	56	48	40	0	10	1.38
28623141--28623174	16	2.1	16	89	10	52	32	0	5	61	1.20
28623461--28623523	27	2.3	27	81	13	76	36	4	1	57	1.30
28623728--28623778	19	2.7	19	82	8	61	43	1	1	52	1.23
28623858--28624171	163	2.0	160	85	7	431	45	2	6	45	1.43
28624277--28624309	12	2.6	13	85	9	50	54	0	0	45	0.99
28631469--28631506	18	2.1	18	85	9	51	34	10	5	50	1.59
28634184--28634254	29	2.5	28	88	6	106	22	26	8	42	1.82
28634242--28634311	29	2.4	29	82	0	86	21	28	12	37	1.90
28639369--28639662	50	5.8	50	83	1	363	20	29	23	26	1.99
28639369--28639651	101	2.8	101	91	0	451	20	30	23	26	1.98
28639376--28639658	151	1.9	152	88	0	433	19	29	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28656641--28656714	37	2.0	37	97	0	139	40	22	2	33	1.69
28673537--28674197	70	9.5	69	77	5	490	29	25	18	26	1.98
28673582--28674197	210	2.9	210	81	1	617	29	25	18	26	1.98
28676049--28676073	8	3.1	8	100	0	50	12	24	0	64	1.27
28676335--28676474	50	2.8	51	82	6	185	30	27	15	26	1.95
28680599--28681090	39	12.6	39	89	0	714	44	19	3	31	1.69
28684758--28684848	39	2.3	39	81	3	112	43	15	4	36	1.67
28690767--28691025	126	2.1	121	89	3	392	39	14	7	38	1.75
28692713--28692739	14	1.9	14	100	0	54	29	22	29	18	1.97
28695012--28695062	21	2.5	21	78	15	61	35	9	27	27	1.88
28696168--28696214	18	2.6	19	76	10	53	40	6	0	53	1.27
28699885--28700003	28	4.3	28	82	5	145	27	25	11	35	1.91
28702436--28702527	25	3.7	25	79	0	103	32	22	19	25	1.97
28704313--28704418	42	2.5	43	75	9	110	32	21	17	28	1.96
28708988--28709101	57	2.0	57	100	0	228	24	17	8	49	1.75
28710519--28710557	20	2.0	20	85	10	53	35	0	17	46	1.49
28713342--28713418	40	1.9	40	89	5	120	27	27	20	24	1.99
28713421--28713479	27	2.2	27	100	0	118	28	27	27	16	1.97
28716187--28716369	40	4.7	40	82	8	216	25	27	22	24	2.00
28716189--28716369	78	2.3	79	83	5	215	24	27	22	24	2.00
28734186--28734222	19	1.9	19	94	0	65	37	16	29	16	1.90
28757218--28757258	18	2.3	18	91	8	66	9	24	46	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28757733--28757798	34	1.9	34	82	11	82	31	19	21	27	1.97
28759769--28759795	14	1.9	14	100	0	54	14	11	14	59	1.62
28760323--28760393	31	2.3	29	79	11	79	36	0	0	63	0.95
28761125--28761397	88	3.0	88	79	8	287	28	13	10	47	1.76
28761827--28761936	39	2.8	38	71	11	107	37	18	23	20	1.94
28761959--28762137	41	4.4	41	88	1	254	21	21	25	31	1.98
28762510--28762629	14	8.4	14	71	14	84	19	1	30	49	1.58
28762573--28762625	15	3.6	15	76	19	58	16	0	33	49	1.47
28762510--28762629	7	16.7	7	73	10	73	19	1	30	49	1.58
28762781--28762879	14	7.0	14	74	10	67	24	1	35	39	1.62
28766591--28766628	20	1.9	20	88	0	58	15	2	31	50	1.58
28768630--28768689	23	2.5	24	78	10	70	33	0	3	63	1.11
28779943--28779999	26	2.2	26	100	0	114	50	19	10	19	1.75
28780465--28780584	22	5.2	22	74	9	89	54	6	16	22	1.65
28780465--28780695	22	10.4	22	66	15	84	52	9	16	21	1.71
28780619--28780756	70	2.0	71	80	7	156	54	8	16	20	1.68
28783643--28783710	30	2.3	29	82	10	75	48	2	1	47	1.26
28783873--28783920	13	3.7	13	74	0	51	37	20	2	39	1.65
28790073--28790197	62	2.1	59	80	7	135	39	4	9	47	1.55
28790180--28790218	14	2.8	14	96	0	69	58	7	15	17	1.59
28793221--28793588	126	3.0	126	86	4	498	28	17	16	37	1.91
28793671--28793794	34	3.7	33	80	5	122	43	14	0	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28794996--28795038	20	2.2	20	95	0	77	65	4	6	23	1.37
28797726--28798230	268	1.9	265	85	2	708	35	13	18	32	1.91
28805630--28805719	45	2.0	45	100	0	180	26	20	13	40	1.89
28808046--28808090	7	6.3	7	82	5	54	13	0	37	48	1.42
28808042--28808090	22	2.2	22	89	7	73	12	0	40	46	1.41
28808489--28809271	225	3.4	225	90	4	1228	35	2	18	43	1.63
28813275--28813562	50	5.8	50	86	4	397	26	22	29	21	1.99
28813274--28813562	95	2.9	97	86	5	366	26	22	29	21	1.99
28817711--28817753	22	2.0	22	100	0	86	46	9	20	23	1.79
28820270--28820296	13	2.1	13	100	0	54	22	7	7	62	1.46
28820400--28820683	50	5.8	50	81	4	335	26	21	30	22	1.99
28820400--28820683	95	2.9	96	84	6	329	26	21	30	22	1.99
28820396--28820681	145	2.0	146	86	0	403	26	20	30	22	1.98
28822396--28822622	40	5.7	40	86	6	291	25	22	27	25	2.00
28830382--28830606	40	5.7	40	86	5	296	24	22	28	25	2.00
28830382--28830639	119	2.2	119	81	6	283	25	21	27	24	1.99
28836680--28836849	84	2.0	85	93	1	288	35	17	22	25	1.95
28839298--28839579	50	5.7	50	85	4	376	25	21	30	21	1.99
28839294--28839579	95	2.9	98	86	5	398	25	21	30	21	1.98
28841966--28842006	11	3.7	12	90	6	52	46	4	24	24	1.72
28841971--28842020	11	4.6	10	85	11	55	52	4	26	18	1.63
28845070--28845097	6	4.7	6	100	0	56	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28845006--28845181	96	1.8	96	91	6	293	44	11	6	37	1.67
28848519--28848663	47	3.1	47	72	16	158	44	2	3	49	1.30
28848543--28848691	44	3.3	44	71	16	144	46	2	2	48	1.24
28848504--28848719	91	2.4	91	93	0	369	46	2	3	47	1.33
28848511--28848787	91	2.9	97	79	15	315	45	1	3	49	1.28
28848535--28848678	47	3.1	47	69	20	140	45	2	2	50	1.28
28848577--28848738	47	3.5	46	74	18	174	46	1	3	48	1.28
28848727--28849134	59	6.8	59	68	20	240	43	2	4	49	1.38
28848726--28849134	120	3.4	120	97	0	755	43	2	4	48	1.38
28848796--28849106	61	5.2	61	69	16	261	43	3	5	47	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173