genome.fa.s17.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  154  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46523430--46523459	15	1.9	16	93	6	53	40	20	23	16	1.91
46526406--46526455	15	3.2	15	75	10	55	24	0	2	74	0.93
46526400--46526459	24	2.5	23	84	10	75	25	0	1	73	0.93
46526404--46526458	17	3.4	15	76	14	56	23	0	1	74	0.91
46526404--46526458	8	6.8	8	75	17	51	23	0	1	74	0.91
46526411--46526467	25	2.2	25	84	9	71	26	0	3	70	1.03
46535513--46535575	29	2.2	29	81	16	78	41	0	1	57	1.08
46535520--46535574	28	1.9	29	85	10	78	40	0	1	58	1.09
46538448--46538511	30	2.1	31	82	8	78	1	12	6	79	0.98
46538454--46538501	25	2.0	23	88	8	69	0	12	6	81	0.87
46538457--46538516	21	2.9	21	82	7	61	1	8	8	81	0.93
46540485--46540531	22	2.1	22	92	0	76	31	6	2	59	1.34
46541925--46541967	19	2.3	19	95	0	77	27	2	9	60	1.40
46542034--46542129	29	3.2	28	75	17	77	30	9	17	42	1.81
46542545--46542646	30	3.4	30	83	2	125	31	21	2	44	1.67
46542542--46542680	60	2.4	59	78	4	156	33	21	2	41	1.68
46542545--46542661	30	4.0	28	74	12	92	31	21	2	44	1.66
46543015--46543063	3	15.0	3	83	12	53	67	0	30	2	1.02
46543015--46543063	10	5.0	9	79	16	53	67	0	30	2	1.02
46543183--46543236	23	2.5	21	82	17	58	75	9	14	0	1.03
46543341--46543405	8	8.4	8	77	13	64	80	0	20	0	0.72
46543341--46543405	24	2.8	23	84	11	87	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46543341--46543405	15	4.2	15	79	14	69	80	0	20	0	0.72
46544019--46544541	18	29.0	17	67	18	190	31	12	10	45	1.75
46544030--46544116	35	2.5	35	79	3	95	28	10	12	48	1.74
46544230--46544275	22	2.1	22	88	8	67	45	10	8	34	1.70
46544212--46544293	40	2.0	42	85	4	114	39	12	7	41	1.70
46544254--46544527	35	7.7	35	73	9	180	33	13	10	42	1.78
46544271--46544348	38	2.0	39	82	7	97	43	11	6	38	1.67
46544434--46544541	34	3.2	34	79	10	114	30	12	11	46	1.76
46544569--46544666	17	5.8	16	69	14	54	25	10	13	51	1.72
46556384--46557383	192	5.2	192	97	0	1831	30	13	21	35	1.92
46556384--46557383	385	2.6	384	96	0	1831	30	13	21	35	1.92
46557402--46557435	16	2.1	17	88	5	52	17	11	5	64	1.45
46557341--46557599	91	2.9	88	82	10	309	26	18	18	37	1.93
46557693--46557909	54	4.1	55	86	9	306	29	16	17	37	1.91
46558151--46558186	14	2.5	15	90	4	56	69	2	0	27	1.02
46558181--46558283	30	3.4	30	82	4	127	29	21	3	45	1.69
46558649--46558704	3	17.0	3	85	14	67	66	0	33	0	0.92
46558649--46558704	10	5.7	9	82	17	67	66	0	33	0	0.92
46558652--46558704	13	3.9	14	85	9	67	66	0	33	0	0.92
46558989--46559026	15	2.5	15	87	12	51	78	0	18	2	0.86
46558985--46559035	23	2.2	23	89	3	75	76	0	21	1	0.88
46559649--46559746	17	5.6	17	76	9	81	25	10	13	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46559647--46559746	35	2.9	35	77	4	105	27	10	13	50	1.72
46559660--46559747	18	5.0	18	67	9	56	27	9	13	50	1.72
46559742--46559821	36	2.2	36	82	10	92	28	7	8	55	1.58
46559798--46559861	18	3.7	17	72	17	60	28	12	12	46	1.78
46559857--46559896	21	1.9	21	94	0	71	35	12	10	42	1.76
46559908--46560194	18	16.4	17	69	13	129	32	14	10	42	1.80
46559925--46560021	37	2.7	36	78	12	101	40	11	7	41	1.69
46559908--46560180	35	7.8	36	71	9	152	32	15	10	41	1.81
46560104--46560169	17	3.8	18	78	8	73	25	13	15	45	1.83
46560087--46560179	34	2.7	34	83	4	116	29	12	12	45	1.80
46560088--46560177	17	5.4	16	78	10	72	28	13	13	44	1.81
46560222--46560319	17	5.8	16	69	14	54	25	10	13	51	1.72
46563769--46563842	34	2.2	34	92	0	121	45	31	0	22	1.53
46569967--46570031	30	2.1	31	86	8	89	46	13	9	30	1.75
46572649--46572764	25	4.6	24	72	11	83	19	25	19	35	1.96
46572647--46572763	50	2.3	50	80	8	139	19	24	19	35	1.95
46572724--46572782	25	2.4	25	85	5	75	20	18	20	40	1.91
46572749--46572834	25	3.4	25	71	9	68	26	23	16	33	1.95
46585148--46585187	19	2.1	19	85	0	53	7	30	10	52	1.62
46597451--46597508	28	2.1	28	100	0	116	39	17	10	32	1.83
46609378--46609411	17	2.0	17	100	0	68	29	5	11	52	1.61
46612379--46612698	162	2.0	162	91	1	516	29	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46613019--46613058	12	3.2	12	86	6	53	52	0	0	47	1.00
46613017--46613058	13	3.2	13	90	6	59	52	0	0	47	1.00
46616040--46616088	21	2.3	21	96	0	89	12	16	18	53	1.73
46616075--46616150	19	3.8	20	76	11	66	15	23	18	42	1.89
46617733--46617789	23	2.5	23	85	0	78	49	7	0	43	1.29
46617770--46617807	17	2.2	17	90	0	58	57	0	0	42	0.98
46617770--46617810	18	2.4	17	87	4	55	56	0	0	43	0.99
46617782--46617815	17	2.0	17	88	0	50	58	2	0	38	1.13
46617824--46617868	19	2.4	19	85	7	56	42	2	0	55	1.12
46619970--46620019	24	2.1	24	96	0	91	10	24	36	30	1.88
46619909--46620112	99	2.0	102	87	9	294	18	20	29	31	1.96
46620031--46620180	72	2.1	69	86	8	205	23	16	28	31	1.96
46620143--46620192	25	2.0	25	92	0	82	16	22	32	30	1.95
46627290--46627340	26	2.0	26	96	0	93	11	23	35	29	1.90
46627213--46627438	103	2.2	103	92	3	368	18	18	31	31	1.95
46631497--46631601	42	2.5	42	84	1	138	26	18	21	33	1.96
46633569--46633628	30	2.0	29	84	9	77	31	40	8	20	1.82
46637595--46637753	10	16.4	10	65	17	59	66	3	2	28	1.20
46637596--46637753	9	16.4	9	67	16	77	65	3	2	28	1.21
46637631--46637677	22	2.2	21	84	3	58	63	4	0	31	1.13
46637684--46637765	19	4.4	19	80	6	78	64	4	3	26	1.30
46638007--46638111	19	5.6	19	72	18	78	29	4	0	64	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46638007--46638115	9	11.6	9	71	12	76	31	4	0	63	1.21
46641835--46641902	35	1.9	35	93	0	118	44	17	10	27	1.81
46642723--46642783	31	2.0	31	83	6	79	44	13	4	37	1.65
46645436--46645474	9	4.4	9	96	3	71	71	0	0	28	0.86
46649731--46649771	21	2.0	21	90	4	66	51	12	9	26	1.70
46650804--46651062	124	2.1	124	82	2	308	34	10	19	35	1.85
46653741--46653781	20	2.0	21	85	4	57	70	0	14	14	1.16
46654055--46654092	19	2.1	19	85	14	53	42	5	10	42	1.62
46658333--46658408	37	2.1	37	97	0	143	26	3	21	48	1.67
46658337--46658396	17	3.4	17	68	20	50	26	5	16	51	1.65
46658347--46658404	16	3.0	21	63	31	56	25	3	18	51	1.62
46660387--46660428	21	2.0	21	100	0	84	28	14	14	42	1.84
46662191--46662240	3	17.3	3	77	8	50	28	0	6	66	1.15
46662194--46662235	9	4.8	9	85	2	59	26	0	7	66	1.17
46668011--46668087	32	2.4	32	89	2	111	36	16	16	29	1.92
46669386--46669453	28	2.5	28	85	2	84	30	1	23	44	1.63
46669382--46669455	27	2.7	26	79	8	76	32	1	22	43	1.62
46669477--46669545	28	2.4	28	76	9	68	36	4	23	36	1.75
46669611--46669911	156	1.9	156	89	1	469	36	13	20	29	1.91
46682127--46682167	21	2.0	21	85	0	55	31	12	4	51	1.60
46682205--46682234	15	2.0	15	93	0	51	56	0	6	36	1.26
46689208--46689295	43	2.0	43	97	0	167	29	17	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46692613--46693005	46	8.8	46	88	7	564	29	21	15	33	1.94
46692888--46693025	36	3.6	36	78	17	159	26	20	14	38	1.91
46692841--46693066	82	2.9	82	90	5	362	27	21	14	36	1.92
46696615--46696942	110	3.0	110	94	0	566	34	20	15	30	1.93
46697050--46697085	18	2.1	17	89	5	54	72	8	5	13	1.27
46697397--46697441	18	2.4	19	85	11	65	60	2	4	33	1.29
46698577--46698617	21	1.9	22	90	5	66	2	4	41	51	1.36
46709316--46709348	3	11.0	3	100	0	66	66	0	0	33	0.92
46711248--46711943	132	5.3	132	85	4	883	26	25	19	29	1.98
46711219--46711943	254	2.8	255	88	3	1013	26	25	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173