genome.fa.s17.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  172  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51906128--51906175	21	2.3	22	79	17	57	41	0	8	50	1.33
51907668--51907701	17	2.0	17	88	0	50	32	20	8	38	1.84
51925986--51926036	16	3.2	16	74	20	52	31	1	1	64	1.15
51925992--51926043	18	3.2	16	72	20	54	30	1	1	65	1.14
51926097--51926126	16	1.9	16	93	6	53	70	0	0	30	0.88
51932635--51933357	378	1.9	377	83	5	940	23	31	10	34	1.88
51934249--51934301	20	2.7	20	82	8	63	18	9	0	71	1.12
51934723--51934761	19	2.0	20	85	5	53	53	10	0	35	1.35
51942338--51942385	10	5.0	10	78	19	57	41	0	2	56	1.11
51942336--51942399	28	2.3	27	92	5	110	42	1	3	53	1.26
51943512--51943597	36	2.4	36	86	0	118	16	23	30	30	1.96
51948803--51948842	21	1.9	21	85	10	55	40	5	2	52	1.37
51948849--51948922	18	4.1	18	80	13	71	40	5	0	54	1.24
51948867--51948921	20	2.9	20	84	7	62	41	3	0	54	1.18
51949623--51949665	19	2.3	19	84	8	52	62	16	2	18	1.43
51949948--51949979	17	1.9	17	93	6	57	40	3	0	56	1.15
51952343--51952385	22	2.0	20	82	8	50	37	2	2	58	1.24
51952762--51952836	31	2.4	31	86	4	107	32	9	10	48	1.70
51955763--51955793	12	2.7	11	90	9	53	29	0	0	70	0.87
51955775--51955835	30	2.0	30	90	0	95	24	6	13	55	1.61
51958405--51958440	16	2.2	16	95	0	63	61	2	5	30	1.33
51959385--51959439	28	1.9	29	81	3	67	41	0	1	56	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51967980--51968247	132	2.0	131	90	5	425	28	10	13	47	1.76
51970949--51971033	40	2.2	40	95	2	154	25	17	16	40	1.90
51974664--51974721	3	19.3	3	100	0	116	0	32	0	67	0.91
51991887--51991923	13	2.9	13	96	4	67	67	0	0	32	0.91
51995790--51995833	15	3.0	15	83	3	54	31	0	2	65	1.05
52002467--52002493	3	9.0	3	100	0	54	33	0	66	0	0.92
52002761--52002958	46	4.6	45	79	13	229	34	14	22	28	1.93
52002797--52002869	36	2.0	36	91	0	119	38	12	20	28	1.89
52002763--52002915	82	1.9	82	95	0	279	35	12	22	29	1.91
52009108--52009138	16	1.9	16	93	0	53	45	35	3	16	1.63
52012963--52013024	24	2.5	24	82	7	63	12	8	12	66	1.45
52025360--52025415	29	1.9	29	88	0	85	41	12	8	37	1.74
52026988--52027382	171	2.3	170	81	6	449	40	18	11	29	1.86
52033709--52033760	23	2.3	22	75	21	54	9	23	1	65	1.32
52040497--52040695	52	3.9	52	83	5	239	25	17	28	29	1.97
52042670--52042726	2	28.5	2	100	0	114	0	49	0	50	1.00
52048495--52048566	31	2.3	31	95	0	126	34	9	9	45	1.70
52058250--52058350	22	4.4	22	70	26	75	47	0	3	48	1.20
52061357--52061420	29	2.2	30	80	5	76	34	9	17	39	1.82
52061366--52061441	29	2.6	29	82	4	89	38	13	18	30	1.89
52071835--52071882	25	1.9	26	87	8	73	27	10	8	54	1.63
52079373--52079427	11	5.0	11	72	14	51	63	0	1	34	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52079349--52079397	26	1.9	25	87	4	71	69	2	2	26	1.10
52079767--52079843	28	2.8	26	77	12	75	37	2	2	57	1.27
52083813--52083875	31	2.0	31	90	0	99	34	9	11	44	1.73
52087978--52088033	23	2.4	23	82	11	69	62	3	0	33	1.12
52095018--52095081	29	2.2	27	83	10	74	76	4	1	17	1.03
52097526--52097558	2	16.5	2	100	0	66	0	48	0	51	1.00
52098126--52098575	234	1.9	236	87	2	661	36	10	13	39	1.78
52100454--52100494	16	2.6	17	81	14	52	21	2	0	75	0.92
52110348--52110378	16	2.0	15	93	6	53	48	0	0	51	1.00
52110444--52110485	16	2.6	16	84	0	57	54	7	2	35	1.41
52110583--52110620	3	12.7	3	100	0	76	34	0	0	65	0.93
52116631--52116727	33	2.9	34	71	21	87	49	1	3	46	1.24
52122313--52122345	14	2.3	15	89	5	50	60	0	3	36	1.12
52123542--52123608	23	2.7	25	86	11	102	0	38	20	40	1.53
52128210--52128391	93	2.0	93	84	2	240	27	23	12	36	1.91
52136992--52137016	8	3.1	8	100	0	50	36	0	0	64	0.94
52139668--52139700	14	2.3	15	94	5	59	63	0	0	36	0.95
52140353--52140390	19	2.0	19	85	10	51	34	0	5	60	1.19
52149051--52149083	16	2.1	16	88	5	50	27	0	0	72	0.85
52161452--52161483	9	3.6	9	91	0	55	40	21	12	25	1.88
52163933--52163989	24	2.4	25	82	11	75	47	0	3	49	1.18
52167497--52168011	274	1.9	276	87	2	757	44	9	11	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52168058--52168675	155	4.0	155	83	2	744	38	10	15	34	1.82
52169715--52170897	278	4.3	274	79	10	1120	43	10	11	34	1.76
52170898--52171939	147	7.1	149	75	10	862	41	11	13	33	1.79
52170504--52171779	579	2.3	561	86	5	1755	42	10	12	33	1.78
52171856--52172730	277	3.2	276	80	8	967	45	9	12	32	1.75
52190048--52190089	16	2.4	18	80	7	52	52	0	0	47	1.00
52190237--52190291	27	2.0	29	82	10	71	50	36	3	9	1.51
52191698--52191731	15	2.4	14	90	5	50	38	5	2	52	1.41
52192415--52192616	108	1.9	108	87	2	298	27	16	18	37	1.92
52196907--52196971	29	2.2	29	83	2	76	41	15	7	35	1.76
52202203--52202310	54	2.0	54	100	0	216	27	18	25	27	1.98
52216076--52216147	35	2.1	35	81	5	83	23	4	13	58	1.53
52223276--52223300	4	6.2	4	100	0	50	76	0	24	0	0.80
52224030--52224103	31	2.4	31	77	4	78	48	12	17	21	1.79
52228426--52228451	8	3.2	8	100	0	52	53	0	0	46	1.00
52230761--52230792	15	2.1	15	94	0	55	0	21	28	50	1.49
52235356--52235422	31	2.2	31	83	0	80	28	17	16	37	1.92
52248195--52248251	16	3.5	17	73	7	55	50	22	1	24	1.58
52251875--52252043	56	3.0	56	92	2	266	48	17	6	27	1.71
52264510--52264540	12	2.6	12	94	0	53	6	22	41	29	1.78
52267573--52267726	51	3.0	51	93	3	258	46	17	7	27	1.75
52267672--52267782	33	3.4	34	86	8	140	45	17	8	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52270832--52270918	28	3.1	28	69	17	74	43	1	2	52	1.21
52271019--52271231	67	3.2	66	64	19	150	46	3	3	45	1.38
52270975--52271396	137	2.9	138	82	8	427	47	4	3	44	1.42
52271123--52271157	18	2.0	17	88	5	52	45	0	0	54	0.99
52271009--52271223	70	3.1	69	66	18	167	46	3	4	46	1.40
52271173--52271386	50	4.2	51	62	20	122	46	5	3	44	1.41
52271099--52271426	156	2.1	156	96	0	611	46	6	3	43	1.45
52271279--52271327	15	2.9	18	80	20	61	44	0	0	55	0.99
52271279--52271333	15	3.4	16	80	16	53	43	0	1	54	1.10
52271478--52271568	45	2.0	45	85	2	121	37	28	6	27	1.82
52271549--52271600	16	3.2	16	94	0	95	40	34	0	25	1.56
52278686--52278908	101	2.2	101	86	1	304	26	25	17	30	1.97
52298001--52298069	31	2.3	31	85	7	90	37	2	5	53	1.40
52302547--52302591	21	2.1	21	95	0	81	28	4	22	44	1.72
52306818--52306842	2	12.5	2	100	0	50	52	48	0	0	1.00
52308854--52308903	24	2.2	24	85	7	68	58	4	12	26	1.51
52308889--52308927	16	2.4	17	86	4	53	56	2	2	38	1.27
52310801--52310842	16	2.6	16	81	7	50	45	2	0	52	1.13
52322718--52322768	16	3.1	16	73	15	50	35	0	1	62	1.06
52322718--52322769	17	3.1	17	73	15	63	36	0	1	61	1.07
52324334--52324399	34	1.9	34	87	6	98	45	15	7	31	1.74
52357985--52358011	3	9.0	3	100	0	54	33	33	33	0	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52362853--52362940	45	2.0	45	86	0	122	15	25	18	40	1.90
52366485--52366513	15	1.9	15	100	0	58	48	3	20	27	1.66
52368674--52368708	18	1.9	18	94	0	61	0	51	5	42	1.25
52377557--52377581	13	1.9	13	100	0	50	24	40	4	32	1.73
52378558--52378932	154	2.5	154	80	3	381	38	8	10	43	1.69
52389131--52389172	20	2.1	20	82	8	50	42	7	4	45	1.52
52389285--52389330	22	2.0	22	87	8	65	52	4	0	43	1.21
52392896--52392928	16	2.1	16	94	0	57	66	0	3	30	1.06
52429135--52429177	22	2.0	22	100	0	86	27	30	4	37	1.77
52429224--52429277	21	2.5	21	93	3	90	44	18	11	25	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173