genome.fa.s17.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  120  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36980109--36980184	9	8.4	9	83	9	84	40	26	9	23	1.84
36988572--36988653	19	4.3	18	76	16	76	30	1	6	62	1.27
36992223--36992271	19	2.5	19	80	3	53	40	0	12	46	1.41
37002763--37002806	20	2.2	20	80	15	56	61	0	4	34	1.16
37002894--37002945	10	5.3	10	76	4	52	71	1	0	26	0.97
37002875--37002947	37	2.0	37	83	5	94	67	2	1	28	1.13
37002932--37002964	17	1.9	17	88	11	50	78	0	6	15	0.93
37002892--37002992	46	2.1	47	83	7	125	68	2	3	24	1.21
37005855--37005945	43	2.1	43	83	4	112	25	16	20	37	1.93
37006157--37006230	25	2.9	25	80	8	78	36	8	20	35	1.82
37010804--37010933	22	5.8	22	74	3	116	35	16	19	29	1.93
37010809--37010934	45	2.8	45	87	0	189	35	15	19	29	1.93
37010764--37010911	67	2.2	68	80	2	163	38	16	16	28	1.90
37011514--37011577	17	3.8	17	83	8	58	21	4	23	50	1.68
37011565--37011631	18	3.7	18	77	0	71	25	11	14	47	1.79
37016017--37016119	20	5.2	20	64	13	68	29	19	32	19	1.96
37015988--37016119	40	3.3	40	92	0	219	31	18	29	20	1.96
37020135--37020178	21	2.1	21	84	16	56	52	6	0	40	1.28
37021041--37021071	5	6.4	5	92	7	55	38	0	0	61	0.96
37021712--37021743	11	2.9	11	95	0	55	28	31	0	40	1.57
37021706--37021750	22	2.0	22	83	8	56	26	31	2	40	1.68
37023816--37023858	21	2.0	21	86	0	59	27	39	30	2	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37024754--37024815	32	2.0	32	93	3	108	46	11	6	35	1.65
37031817--37032100	126	2.3	125	88	0	406	29	18	17	34	1.94
37032146--37032607	91	4.9	90	82	12	469	40	16	2	40	1.62
37032146--37032607	97	4.9	95	83	9	548	40	16	2	40	1.62
37041238--37041281	23	1.9	22	82	17	54	36	25	0	38	1.56
37041328--37041414	45	1.9	45	95	0	156	34	24	16	25	1.95
37041435--37041598	51	3.2	50	79	4	195	34	28	14	23	1.94
37047412--37047834	138	3.1	138	90	0	668	40	8	5	45	1.56
37047895--37047928	17	2.0	17	94	0	59	55	5	0	38	1.24
37049968--37050056	44	2.0	43	85	8	117	31	23	19	25	1.98
37053385--37053483	29	3.2	30	77	19	121	42	24	11	22	1.85
37062874--37062911	20	1.9	20	88	0	58	76	5	5	13	1.13
37068597--37068650	23	2.3	23	77	0	63	48	18	14	18	1.82
37072917--37073062	40	3.7	40	82	3	177	32	23	13	30	1.92
37073506--37073541	18	1.9	19	88	5	56	44	2	19	33	1.65
37076155--37076187	17	2.0	16	94	5	57	36	0	3	60	1.12
37080161--37080296	40	3.4	40	75	6	141	36	18	21	24	1.95
37080330--37080474	41	3.5	41	88	1	209	19	19	31	30	1.96
37080794--37080945	14	10.9	14	70	8	94	22	0	32	44	1.58
37080878--37080996	21	5.7	20	70	14	64	21	0	40	37	1.59
37080922--37080979	14	4.2	13	76	12	53	18	0	46	34	1.50
37081103--37081144	16	2.5	17	92	7	68	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37081841--37081946	53	2.0	53	100	0	212	37	11	13	37	1.80
37086932--37087216	43	6.6	43	84	2	342	28	18	27	25	1.98
37086932--37087216	128	2.2	129	86	5	380	28	18	27	25	1.98
37088703--37088750	3	15.3	3	93	4	78	31	0	2	66	1.03
37091077--37091119	19	2.3	19	84	8	52	23	20	16	39	1.92
37092971--37093250	144	1.9	144	86	0	398	29	17	21	31	1.96
37093508--37093572	10	6.5	10	85	7	71	83	0	15	1	0.73
37093489--37093573	22	4.0	20	82	14	91	81	0	16	2	0.80
37093489--37093573	42	2.0	42	86	6	118	81	0	16	2	0.80
37093506--37093572	31	2.2	30	86	10	91	83	0	14	1	0.72
37093504--37093571	36	1.9	35	88	8	102	83	0	14	1	0.71
37093899--37094083	97	2.0	95	88	6	279	27	16	8	48	1.74
37094982--37095821	46	18.3	46	87	1	1071	28	16	25	30	1.96
37095967--37096148	44	4.1	44	68	18	110	32	19	21	25	1.97
37097486--37097516	3	10.3	3	100	0	62	32	0	0	67	0.91
37097554--37097606	18	3.0	17	80	5	61	39	5	5	49	1.50
37098997--37099040	21	2.1	21	83	8	54	47	9	9	34	1.67
37101782--37102089	107	2.8	110	86	5	441	29	13	20	36	1.91
37102987--37103032	15	3.1	15	80	0	56	32	0	2	65	1.05
37103234--37103276	22	1.9	23	90	4	70	48	2	2	46	1.27
37107013--37107324	25	12.5	25	66	1	104	21	16	27	35	1.94
37107013--37107324	50	6.2	50	81	1	338	21	16	27	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37107027--37107299	150	1.8	150	85	1	386	20	16	27	35	1.94
37110517--37110561	20	2.2	21	88	4	65	51	11	13	24	1.73
37119052--37119081	10	3.1	10	95	4	53	36	0	10	53	1.35
37119285--37119362	37	2.1	37	85	0	102	14	14	29	42	1.84
37130185--37130229	24	1.9	23	82	13	56	11	40	4	44	1.60
37132821--37132943	57	2.1	57	83	4	149	43	6	20	29	1.76
37133407--37133440	17	2.0	17	88	11	52	5	26	0	67	1.13
37134200--37134290	38	2.4	38	80	7	112	30	15	17	36	1.91
37135998--37136035	19	2.0	19	94	0	67	55	5	5	34	1.45
37136843--37136890	24	2.0	25	87	4	71	16	6	2	75	1.11
37139347--37139413	34	1.9	35	84	3	91	32	10	13	43	1.78
37139362--37139400	20	2.0	20	84	0	51	28	12	12	46	1.79
37169647--37169692	24	2.0	23	83	12	58	32	13	19	34	1.90
37169882--37169946	31	2.1	31	97	0	121	44	13	7	33	1.73
37173158--37173220	33	1.9	32	90	9	101	30	19	25	25	1.98
37177554--37177578	4	6.2	4	100	0	50	24	0	0	76	0.80
37182590--37182652	28	2.2	28	86	5	83	33	12	26	26	1.93
37182796--37182830	13	2.7	13	95	0	61	22	14	11	51	1.74
37182981--37183014	14	2.4	15	90	9	54	70	2	0	26	1.01
37183010--37183111	30	3.4	31	84	8	122	30	20	3	45	1.69
37183007--37183145	60	2.4	59	80	4	156	33	20	3	42	1.70
37183715--37183758	23	2.0	22	90	4	70	38	13	9	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37183715--37183758	22	2.0	21	86	8	61	38	13	9	38	1.77
37183863--37183932	18	3.9	18	83	3	97	30	11	8	50	1.68
37184007--37184050	17	2.6	16	86	10	61	29	20	6	43	1.78
37184069--37184190	17	7.1	16	66	21	59	30	10	12	46	1.75
37184030--37184142	40	2.9	39	77	13	110	34	8	7	48	1.64
37184112--37184188	34	2.3	33	81	2	82	25	11	14	48	1.78
37195877--37197054	192	6.2	191	95	2	2099	30	14	20	35	1.92
37196707--37196931	123	1.9	119	81	3	270	32	14	19	34	1.92
37195877--37197054	571	2.1	570	96	1	2168	30	14	20	35	1.92
37197018--37197261	91	2.8	89	80	9	286	27	19	18	34	1.95
37197018--37197270	85	2.9	88	79	10	288	27	18	18	35	1.94
37197257--37197290	15	2.5	13	82	17	50	11	8	8	70	1.34
37197262--37197290	15	1.9	15	100	0	58	13	6	6	72	1.26
37197379--37197596	54	4.1	55	87	8	315	28	16	16	38	1.91
37197846--37197871	7	3.7	7	100	0	52	88	0	0	11	0.52
37197869--37197970	30	3.4	31	84	8	122	30	20	3	45	1.69
37198168--37198216	11	4.7	11	78	19	52	79	2	18	0	0.83
37198168--37198216	20	2.4	21	79	3	64	79	2	18	0	0.83
37198166--37198214	23	2.2	21	85	7	62	83	2	14	0	0.73
37198356--37198406	22	2.3	22	86	3	66	31	0	0	68	0.90
37198364--37198403	21	1.9	21	84	0	53	27	0	0	72	0.85
37198365--37198406	16	2.7	16	81	3	50	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37198571--37198614	23	2.0	22	90	4	70	38	13	9	38	1.77
37198571--37198614	22	2.0	21	86	8	61	38	13	9	38	1.77
37198719--37198788	18	3.9	18	81	3	88	31	11	10	47	1.73
37198927--37199043	16	6.9	16	66	19	67	28	10	12	48	1.74
37198923--37199012	34	2.6	35	79	10	96	30	8	11	50	1.68
37198842--37199040	92	2.2	89	80	8	208	29	10	9	50	1.67
37202445--37202473	13	2.1	14	93	6	51	27	10	6	55	1.59
37205772--37205810	13	3.1	13	81	7	53	41	15	0	43	1.46
37218782--37218847	33	2.0	34	85	8	93	57	4	6	31	1.43
37220727--37220941	100	2.2	99	78	2	223	26	19	23	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173