genome.fa.s17.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  110  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34127969--34128324	87	4.1	87	92	0	577	29	22	23	24	1.99
34128116--34128252	43	3.2	43	66	17	120	28	24	22	24	1.99
34128314--34128736	131	3.2	131	89	2	661	30	21	24	23	1.99
34128894--34128977	44	1.9	44	82	0	105	27	17	25	29	1.98
34129685--34129717	14	2.2	16	89	10	52	6	9	6	78	1.08
34130480--34130521	21	2.0	22	86	13	61	23	11	0	64	1.27
34131949--34132005	25	2.3	25	75	6	62	57	1	10	29	1.42
34132547--34132591	23	2.0	22	91	4	72	35	17	8	37	1.81
34132547--34132623	19	3.8	19	87	6	100	37	16	9	36	1.81
34143215--34143241	14	1.9	14	100	0	54	44	7	0	48	1.31
34158774--34158831	27	2.1	28	81	9	66	50	15	12	22	1.77
34167304--34167375	27	2.7	27	82	8	85	30	1	19	48	1.57
34170447--34170474	5	5.6	5	100	0	56	60	0	0	39	0.97
34171429--34171559	33	4.0	33	81	3	147	19	12	31	37	1.88
34177568--34177722	63	2.4	66	80	10	201	32	9	15	43	1.78
34183389--34183439	20	2.5	20	96	0	93	29	15	9	45	1.79
34189874--34190010	42	3.5	42	75	17	166	22	17	26	33	1.96
34189840--34190013	75	2.3	75	95	1	305	21	18	27	33	1.96
34189913--34190113	102	2.0	102	92	2	332	21	18	27	31	1.97
34194979--34195113	63	2.1	63	89	2	200	31	5	15	46	1.70
34197343--34197367	12	2.1	12	100	0	50	36	0	32	32	1.58
34200280--34200503	54	4.1	54	90	2	335	18	13	20	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34200277--34200503	81	2.8	79	83	9	296	18	13	21	47	1.82
34200277--34200503	27	8.4	27	81	3	260	18	13	21	47	1.82
34214991--34215186	66	3.0	66	98	0	374	33	7	26	33	1.85
34215580--34215627	10	5.2	9	82	12	62	27	0	2	70	0.98
34215583--34215627	18	2.4	19	92	3	74	26	0	2	71	0.98
34216607--34216837	117	2.0	117	94	1	410	32	14	16	36	1.89
34228148--34228265	58	2.0	58	96	0	218	44	12	11	30	1.78
34233154--34233207	21	2.6	21	90	0	90	20	29	31	18	1.96
34234620--34234660	15	2.8	15	85	10	50	7	29	0	63	1.21
34241757--34241816	25	2.4	23	78	13	66	35	1	1	61	1.16
34247316--34247442	26	4.9	26	79	7	123	20	11	33	35	1.88
34247308--34247442	52	2.6	53	80	10	147	20	11	33	34	1.88
34248815--34248844	12	2.5	12	94	0	51	0	30	33	36	1.58
34251696--34251732	11	3.5	11	92	3	58	37	0	5	56	1.22
34254676--34254710	3	11.7	3	100	0	70	0	34	0	65	0.93
34261729--34261760	14	2.3	14	100	0	64	18	28	18	34	1.95
34270528--34270583	24	2.3	24	87	6	78	19	28	21	30	1.98
34270502--34270622	24	5.0	24	69	10	77	19	26	19	33	1.96
34280015--34280043	7	4.3	7	95	4	51	27	0	0	72	0.85
34299651--34299677	13	2.1	13	100	0	54	77	7	0	14	0.97
34315346--34315433	45	2.0	45	93	0	149	32	23	19	23	1.97
34315445--34315630	51	3.7	50	79	6	223	31	27	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34315443--34315626	100	1.8	101	91	2	307	31	27	17	23	1.97
34316930--34317059	61	2.1	61	91	0	206	43	3	3	50	1.33
34316952--34317056	31	3.4	30	72	12	97	41	3	1	52	1.30
34320575--34320615	21	2.0	21	85	9	57	46	2	0	51	1.14
34322820--34322846	14	1.9	14	100	0	54	29	0	3	66	1.09
34322918--34322962	24	1.9	23	86	4	63	31	8	2	57	1.41
34323202--34323245	18	2.5	18	88	3	63	15	4	6	72	1.22
34327770--34327819	24	2.1	24	96	0	91	84	6	6	4	0.88
34327778--34327819	8	5.2	8	85	0	57	85	7	4	2	0.80
34328485--34328510	3	8.7	3	100	0	52	65	0	0	34	0.93
34328858--34328923	34	2.1	31	86	11	89	48	16	13	21	1.80
34334609--34334718	23	5.1	21	80	9	132	36	22	21	19	1.95
34335025--34335056	16	1.9	17	93	6	57	25	21	0	53	1.46
34335285--34335328	8	5.2	8	78	10	52	0	18	4	77	0.94
34335282--34335328	17	2.8	17	100	0	94	0	17	6	76	0.98
34335282--34335325	9	5.1	9	78	10	56	0	15	6	77	0.97
34335341--34335378	3	12.7	3	83	10	51	63	2	0	34	1.09
34335511--34335575	30	2.3	27	84	7	76	44	3	0	52	1.16
34335541--34335577	16	2.3	17	81	13	51	48	0	0	51	1.00
34336211--34336300	43	2.1	44	82	2	110	31	12	7	48	1.69
34344966--34345003	19	2.0	19	94	0	67	28	26	7	36	1.84
34345279--34345337	17	3.4	17	71	17	57	57	6	3	32	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34345413--34345466	26	2.1	25	86	6	72	31	1	38	27	1.67
34345688--34345718	14	2.2	14	94	0	53	58	0	0	41	0.98
34347357--34347388	16	2.0	16	100	0	64	31	25	6	37	1.81
34353136--34353200	32	2.1	32	97	2	123	47	12	9	30	1.72
34358737--34358770	14	2.4	14	90	0	50	0	17	2	79	0.86
34360748--34360891	78	1.9	76	94	2	252	22	6	25	45	1.75
34361321--34361350	15	2.0	15	93	0	51	10	6	10	73	1.25
34362435--34362467	13	2.5	13	90	0	57	45	0	12	42	1.41
34369507--34369715	80	2.6	80	87	2	287	15	15	25	44	1.85
34369497--34369710	40	5.4	40	79	3	227	14	15	25	44	1.84
34377007--34377046	21	1.9	21	84	0	53	45	2	15	37	1.59
34378633--34378682	21	2.4	21	80	6	57	2	38	20	40	1.64
34386305--34386344	16	2.5	16	91	0	62	47	2	7	42	1.45
34386354--34386533	68	2.9	61	89	8	265	40	5	9	45	1.58
34386417--34386444	9	3.1	9	100	0	56	32	0	10	57	1.33
34386333--34386503	68	2.5	68	97	1	319	39	4	8	47	1.54
34386426--34386538	59	1.9	59	92	1	190	42	5	8	43	1.58
34386600--34386643	24	1.9	24	90	9	74	61	2	0	36	1.09
34387100--34387124	10	2.5	10	100	0	50	32	8	0	60	1.26
34387530--34387647	23	5.1	23	76	4	87	33	22	18	25	1.97
34387530--34387647	46	2.6	46	82	2	121	33	22	18	25	1.97
34394001--34394046	24	1.9	24	86	8	67	30	17	4	47	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34394381--34394567	51	3.7	50	81	5	225	31	27	17	24	1.97
34394379--34394563	101	1.8	101	90	3	300	31	27	17	24	1.97
34396072--34396132	32	1.9	32	100	0	122	45	11	8	34	1.70
34396639--34396734	41	2.3	41	90	0	156	26	14	20	38	1.91
34399079--34399313	116	2.0	116	99	0	461	41	12	19	26	1.87
34399559--34399735	88	2.0	88	100	0	354	41	18	15	23	1.89
34400497--34400590	47	2.0	47	97	0	179	42	18	8	30	1.80
34402095--34402136	22	1.9	22	85	0	57	45	0	2	52	1.13
34402405--34402433	7	4.1	7	100	0	58	41	31	0	27	1.56
34402516--34402580	14	4.6	14	72	9	51	21	3	1	73	1.05
34408387--34408442	25	2.3	24	79	11	69	44	0	3	51	1.18
34408392--34408439	25	1.9	25	87	8	71	37	0	4	58	1.18
34410466--34410503	5	7.6	5	91	8	60	81	2	0	15	0.80
34411407--34411449	13	3.5	13	75	18	56	46	16	2	34	1.60
34411407--34411481	23	3.3	23	88	0	105	48	12	2	37	1.55
34411482--34411522	18	2.3	18	86	0	55	58	4	2	34	1.32
34412070--34412105	6	6.0	6	87	12	56	13	0	2	83	0.76
34416520--34416565	24	1.9	24	86	0	65	47	8	4	39	1.54
34416818--34416880	32	2.0	32	90	0	99	44	11	12	31	1.78
34418543--34418699	48	3.4	46	80	8	167	43	33	3	19	1.67
34418543--34418701	23	6.9	22	77	14	135	42	34	3	19	1.67
34427378--34427428	26	2.0	26	96	3	95	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34427384--34427433	8	6.1	8	80	11	57	80	0	0	20	0.72
34430542--34430634	36	2.6	36	89	1	134	25	11	15	47	1.79
34432014--34432052	13	3.0	13	84	0	51	51	0	0	48	1.00
34431953--34432143	103	1.8	104	95	1	348	39	8	13	38	1.75
34433122--34433167	21	2.1	22	96	4	85	19	28	4	47	1.68
34435406--34435441	18	2.0	18	88	0	54	30	0	8	61	1.26
34435457--34435533	20	3.8	20	73	13	86	58	1	3	36	1.25
34435604--34435680	14	5.0	15	74	20	70	42	16	7	32	1.77
34435620--34435659	20	2.0	20	90	0	62	50	12	10	27	1.72
34435608--34435674	34	1.9	35	90	3	109	46	14	7	31	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173