genome.fa.s17.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  108  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33574152--33574182	15	2.1	15	93	0	53	64	6	0	29	1.18
33579034--33579081	23	2.1	23	84	7	62	31	0	16	52	1.45
33588990--33589057	33	2.1	33	100	0	136	38	11	11	38	1.79
33589510--33589538	15	1.9	15	100	0	58	31	34	13	20	1.92
33591390--33591469	25	3.2	24	82	5	81	16	27	21	35	1.94
33591312--33591458	49	3.0	48	75	13	127	19	27	20	33	1.96
33594670--33594767	27	3.6	27	72	2	90	26	24	16	32	1.96
33594723--33594795	27	2.7	27	80	0	74	24	21	13	39	1.90
33597800--33597858	21	2.7	22	82	10	68	44	0	1	54	1.10
33599684--33599789	52	2.0	52	98	0	203	46	16	4	32	1.68
33600158--33600215	22	2.6	22	88	2	89	32	29	0	37	1.58
33600185--33600300	51	2.3	51	92	0	187	29	24	0	46	1.53
33601443--33601467	7	3.6	7	100	0	50	28	0	12	60	1.32
33602120--33602154	18	1.9	18	94	0	61	25	31	8	34	1.86
33604875--33605226	126	2.8	125	87	1	510	34	21	15	29	1.94
33605638--33605674	16	2.3	16	90	0	56	35	10	5	48	1.61
33605806--33605857	24	2.2	24	92	0	86	55	7	1	34	1.39
33606000--33606030	16	1.9	16	100	0	62	38	6	25	29	1.81
33612658--33612777	51	2.4	50	84	5	143	27	19	7	45	1.77
33614561--33614618	27	2.2	25	85	11	73	29	3	6	60	1.39
33616267--33616304	17	2.4	17	86	8	53	68	2	2	26	1.16
33619984--33620029	20	2.4	19	85	7	58	30	8	13	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33631182--33631238	21	2.6	21	78	15	62	38	5	8	47	1.57
33632674--33632751	32	2.4	32	82	0	102	29	2	14	53	1.53
33634174--33634216	14	2.9	15	86	10	54	41	13	4	39	1.66
33658926--33658986	29	2.1	29	100	0	122	29	22	18	29	1.97
33667943--33668474	94	5.7	94	80	4	500	34	19	19	26	1.96
33668009--33668250	44	5.2	44	63	18	114	34	20	20	24	1.96
33667943--33668490	188	2.9	188	85	2	672	34	18	19	26	1.96
33668018--33668500	187	2.6	187	85	2	612	36	19	19	25	1.95
33674105--33674222	54	2.2	54	92	1	193	35	17	15	31	1.91
33676642--33676692	23	2.2	23	89	0	75	27	7	21	43	1.80
33682662--33682686	3	8.3	3	100	0	50	32	0	0	68	0.90
33684299--33684420	43	2.8	43	86	0	163	27	31	18	22	1.98
33684361--33684442	43	1.9	43	82	5	103	32	31	14	20	1.93
33684592--33684763	85	2.0	84	86	1	236	29	28	17	25	1.97
33684599--33684773	43	4.1	43	84	1	208	28	29	18	24	1.98
33684299--33684915	336	1.8	336	90	1	995	35	18	11	34	1.87
33685353--33685378	5	5.2	5	100	0	52	80	19	0	0	0.71
33688675--33688729	23	2.4	23	100	0	110	50	0	5	43	1.25
33689452--33689482	7	4.6	7	92	8	55	32	51	0	16	1.44
33689452--33689478	13	2.1	13	100	0	54	29	55	0	14	1.40
33689869--33689942	13	5.7	13	75	10	71	64	2	2	29	1.21
33689869--33689944	38	2.0	40	86	5	111	64	2	3	28	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33689894--33689936	16	2.5	17	88	7	61	67	2	2	27	1.15
33689887--33689949	21	3.2	21	73	15	62	63	4	3	28	1.30
33689894--33689956	21	3.2	21	78	10	71	63	3	3	30	1.25
33689952--33690582	114	5.5	114	88	1	899	28	25	19	26	1.99
33698923--33698962	3	13.3	3	100	0	80	35	0	32	32	1.58
33699470--33699504	8	4.4	8	100	0	70	25	25	11	37	1.90
33703867--33703920	16	3.3	16	76	2	54	18	1	1	77	0.95
33703983--33704030	18	2.5	19	83	13	62	33	0	2	64	1.05
33716457--33716577	45	2.7	45	79	13	142	28	20	25	25	1.99
33716367--33716922	44	12.9	44	70	13	243	29	21	22	26	1.99
33716367--33717002	216	2.9	217	91	1	1026	29	21	22	26	1.99
33716459--33717010	44	12.7	44	68	18	232	29	21	23	26	1.99
33718339--33718392	16	3.3	16	76	2	63	20	1	0	77	0.86
33718317--33718392	30	2.4	32	82	12	86	18	3	2	75	1.08
33718451--33718548	22	4.6	21	69	20	69	33	2	3	61	1.23
33718455--33718502	18	2.5	19	86	13	71	31	0	4	64	1.12
33732915--33732972	22	2.8	20	72	10	62	34	3	22	39	1.71
33733093--33733138	24	1.9	25	86	8	69	15	15	0	69	1.19
33734956--33734991	18	2.1	17	89	5	54	58	16	16	8	1.61
33735569--33735645	14	5.0	15	71	20	52	42	14	9	33	1.77
33735585--33735624	20	2.0	20	90	0	62	50	12	10	27	1.72
33735573--33735639	34	1.9	35	90	3	109	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33746058--33746145	45	2.0	45	86	4	124	27	18	20	34	1.96
33753486--33753780	51	5.8	50	81	6	335	29	27	15	28	1.96
33753486--33753780	102	2.9	102	92	0	457	29	27	15	28	1.96
33753487--33753776	153	1.9	151	84	4	386	30	27	14	27	1.95
33755792--33755879	29	3.1	29	62	21	69	22	11	13	52	1.72
33755771--33755883	55	2.1	55	98	0	217	23	10	15	49	1.76
33760511--33760537	13	2.1	13	100	0	54	37	0	14	48	1.45
33767363--33767399	18	2.1	18	89	0	56	43	29	2	24	1.68
33768858--33768897	19	2.2	19	86	4	55	30	12	0	57	1.36
33775142--33775226	44	1.9	44	83	4	109	30	28	20	21	1.98
33776734--33776775	22	2.0	20	86	13	59	14	16	23	45	1.84
33776835--33777071	43	5.5	43	82	7	286	27	26	17	28	1.98
33777184--33777268	27	3.2	26	70	12	66	52	3	2	41	1.31
33778587--33778623	16	2.3	16	95	0	65	40	13	18	27	1.88
33786154--33786206	21	2.5	21	93	0	88	30	39	9	20	1.84
33787577--33787630	23	2.3	23	96	3	99	50	3	3	42	1.38
33787886--33787939	21	2.5	21	84	3	72	35	42	0	22	1.54
33787929--33787968	20	2.0	20	85	9	55	35	45	0	20	1.51
33787955--33787992	14	2.7	15	84	12	53	42	28	0	28	1.56
33788148--33788204	25	2.3	24	84	3	78	59	1	1	36	1.18
33788266--33788296	7	4.3	7	95	4	53	29	58	0	12	1.35
33788266--33788303	14	2.6	15	87	8	60	31	52	0	15	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33788288--33788338	21	2.4	21	83	9	68	35	39	0	25	1.56
33788313--33788346	14	2.4	14	85	0	50	38	32	0	29	1.58
33788714--33789025	41	7.6	41	87	0	356	28	27	19	24	1.99
33795112--33795151	18	2.2	18	86	0	53	70	0	5	25	1.08
33797566--33797624	17	3.4	17	71	17	57	57	3	1	37	1.25
33798030--33798104	33	2.2	33	81	9	89	24	29	2	44	1.67
33798030--33798106	22	3.5	22	80	18	88	24	28	2	44	1.67
33798030--33798106	11	6.9	11	71	21	63	24	28	2	44	1.67
33798068--33798165	51	1.9	51	85	4	135	27	23	3	45	1.67
33799947--33799986	18	2.2	18	86	0	53	17	30	7	45	1.76
33800523--33800746	22	10.2	22	81	3	238	43	30	0	25	1.61
33800532--33800747	43	5.0	43	80	4	220	43	31	0	23	1.60
33800523--33800747	65	3.4	65	80	6	222	43	31	0	24	1.61
33800748--33801273	125	4.2	125	84	4	652	30	21	16	30	1.96
33817636--33817687	17	3.0	17	75	10	52	61	3	1	32	1.25
33817658--33817698	17	2.4	19	80	19	54	56	4	0	39	1.21
33817782--33817835	13	4.2	13	76	9	65	31	7	27	33	1.84
33823985--33824030	23	2.0	23	83	8	58	45	15	23	15	1.84
33824284--33824342	28	2.1	28	81	12	68	50	6	5	37	1.51
33826110--33826159	14	3.6	14	76	17	52	52	0	0	48	1.00
33826110--33826159	15	3.6	14	75	22	52	52	0	0	48	1.00
33826111--33826173	26	2.4	26	82	12	83	53	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33832594--33832649	18	3.1	18	81	0	67	10	8	44	35	1.71
33838546--33838832	49	5.6	51	83	6	241	28	20	27	22	1.99
33838548--33838734	100	1.8	103	85	6	263	26	21	29	22	1.99
33841001--33841046	24	1.9	24	91	8	76	28	8	8	54	1.61
33841698--33841740	16	2.6	16	85	3	50	4	23	0	72	1.04
33842620--33842744	38	3.4	38	84	3	166	35	19	14	31	1.91
33846521--33846547	13	2.1	13	100	0	54	29	0	22	48	1.51
33854455--33854481	13	2.1	13	100	0	54	29	0	22	48	1.51
33855563--33855718	84	1.8	85	82	13	205	26	17	25	30	1.97
33867234--33867263	13	2.2	14	94	5	53	46	0	6	46	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173