genome.fa.s17.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  124  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37985227--37985256	16	1.9	15	93	6	51	46	0	6	46	1.29
37987225--37987274	24	2.1	24	100	0	100	40	12	8	40	1.72
37987230--37987284	24	2.3	24	87	0	74	36	12	10	40	1.79
37987830--37988126	50	5.8	50	83	3	299	29	21	26	22	1.99
37991213--37991338	57	2.2	58	84	4	166	39	33	13	13	1.84
37992151--37992195	20	2.2	20	88	0	63	48	8	4	37	1.55
37992119--37992195	40	1.9	40	81	0	91	45	7	10	36	1.67
37992159--37992198	20	2.0	20	100	0	80	45	5	5	45	1.47
37992171--37992227	30	1.9	30	85	7	80	43	3	7	45	1.48
37993678--37993710	11	3.1	11	86	8	50	45	0	0	54	0.99
37993853--37993908	19	3.0	19	71	10	53	28	1	7	62	1.32
37993854--37993913	18	3.3	18	73	13	52	25	1	6	66	1.25
37997111--37997260	74	2.0	74	100	0	300	43	29	14	13	1.83
38001073--38001296	40	5.7	40	88	5	280	26	26	21	25	2.00
38001073--38001296	79	2.8	78	81	10	267	26	26	21	25	2.00
38009055--38009277	40	5.7	40	87	7	296	26	27	21	24	1.99
38009055--38009277	79	2.8	78	85	6	290	26	27	21	24	1.99
38013097--38013144	21	2.3	21	89	7	71	18	39	18	22	1.92
38012903--38013191	147	2.0	147	92	0	488	22	31	21	25	1.98
38017827--38018078	90	2.8	89	79	8	233	28	16	22	32	1.96
38018907--38019012	44	2.4	46	75	10	112	26	0	22	50	1.56
38018911--38019011	23	4.6	21	71	18	71	25	0	22	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38018909--38019094	66	2.8	66	85	0	237	29	0	19	50	1.52
38019595--38019666	36	2.0	36	94	0	126	38	8	30	22	1.83
38025937--38026126	50	3.7	50	83	7	193	27	19	27	25	1.99
38026310--38026354	22	2.0	22	100	0	90	40	13	8	37	1.76
38032364--38032396	16	2.0	17	88	5	50	39	24	3	33	1.71
38041506--38041537	12	2.7	12	100	0	64	50	0	6	43	1.27
38043285--38043381	43	2.3	43	80	7	108	42	22	13	21	1.88
38043371--38043499	42	3.1	41	82	4	134	44	17	16	21	1.87
38043289--38043516	42	5.4	42	74	7	129	44	20	14	21	1.86
38045363--38045395	17	1.9	17	100	0	66	12	6	3	78	1.04
38047968--38048007	20	2.0	20	90	0	62	35	5	7	52	1.51
38054206--38054238	16	2.1	16	94	0	57	42	0	15	42	1.46
38056639--38056673	18	1.9	18	94	0	61	31	0	0	68	0.90
38066207--38066237	5	6.2	5	100	0	62	38	0	0	61	0.96
38067923--38067954	7	4.6	7	100	0	64	28	0	12	59	1.34
38068606--38068640	18	1.9	18	94	0	61	25	31	8	34	1.86
38069061--38069146	43	2.0	45	83	4	113	39	1	12	46	1.50
38069114--38069226	25	4.7	25	74	18	123	40	0	14	44	1.51
38069072--38069227	70	2.3	69	94	2	278	41	0	13	44	1.48
38069236--38069318	29	2.8	30	94	3	150	46	26	0	26	1.53
38069250--38069659	29	16.5	23	72	24	206	46	26	0	26	1.53
38069280--38069514	45	5.2	45	79	16	265	46	26	0	26	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38069298--38069492	88	2.2	87	86	9	263	47	25	0	27	1.53
38069280--38069492	66	3.2	67	86	9	328	46	25	0	27	1.53
38069457--38070070	29	21.1	29	86	7	820	45	27	0	26	1.58
38070017--38070080	23	2.8	23	90	0	92	50	23	1	25	1.58
38070077--38070430	116	3.1	116	96	0	645	37	9	9	42	1.71
38070406--38070447	17	2.4	18	80	4	50	42	9	2	45	1.49
38073459--38073809	124	2.8	126	90	1	553	32	22	15	29	1.95
38075086--38075119	17	2.0	17	100	0	68	70	0	0	29	0.87
38081603--38081649	19	2.5	19	82	0	58	34	23	25	17	1.96
38088471--38088641	41	4.2	41	84	3	204	23	26	15	35	1.94
38088471--38088641	82	2.1	82	85	9	226	23	26	15	35	1.94
38095909--38096241	102	3.3	102	90	0	522	19	19	27	32	1.96
38096145--38096277	33	3.7	33	71	20	106	21	21	27	30	1.98
38101013--38101039	5	5.4	5	100	0	54	40	40	0	18	1.51
38101248--38101297	22	2.3	22	86	6	66	30	22	12	36	1.90
38103543--38103571	12	2.3	13	94	5	51	55	0	20	24	1.44
38109035--38109080	24	2.0	23	82	4	56	32	4	2	60	1.28
38121913--38121974	24	2.6	24	82	5	63	69	6	6	17	1.32
38121959--38121998	15	2.7	15	81	14	55	67	2	7	22	1.28
38121961--38122023	21	3.1	19	73	13	54	71	1	7	19	1.19
38129072--38129105	17	2.1	17	88	5	52	20	14	0	64	1.28
38143533--38143562	10	3.0	10	90	0	51	23	0	36	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38144292--38144390	36	2.8	36	85	0	117	28	20	28	23	1.99
38154320--38154478	41	3.7	43	77	6	135	27	28	18	25	1.98
38158957--38159038	28	2.9	28	92	0	137	35	15	20	28	1.94
38158957--38159054	28	3.5	28	88	2	126	35	16	22	25	1.94
38160293--38160424	66	2.0	66	100	0	264	43	12	16	27	1.83
38160637--38160679	18	2.5	17	81	7	52	65	0	2	32	1.06
38161366--38161413	22	2.3	21	80	16	55	68	4	8	18	1.31
38188964--38189001	18	2.2	18	86	9	53	68	2	5	23	1.23
38195312--38195395	33	2.5	33	90	0	123	19	19	35	26	1.95
38207147--38207384	120	2.0	120	97	0	449	41	7	13	37	1.74
38209490--38209572	22	3.8	22	70	12	71	24	3	24	48	1.67
38219205--38219262	7	8.4	7	75	21	52	60	0	1	37	1.07
38219194--38219237	20	2.2	20	92	4	72	59	0	2	38	1.10
38219456--38219509	21	2.3	23	87	12	76	55	0	1	42	1.10
38219504--38219532	11	2.6	11	100	0	58	58	0	0	41	0.98
38219488--38219532	22	2.1	21	84	12	56	51	0	2	46	1.13
38219791--38219845	21	2.6	21	79	0	65	25	7	36	30	1.83
38228008--38228038	15	2.1	15	100	0	62	35	19	0	45	1.51
38230220--38230246	11	2.5	11	100	0	54	22	7	18	51	1.70
38231642--38231835	92	2.1	92	88	5	286	44	4	4	46	1.41
38231813--38231911	52	2.0	52	80	11	118	45	6	2	46	1.39
38231868--38231901	17	2.0	17	94	0	59	44	5	0	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38231873--38231920	17	3.0	16	79	17	55	45	6	2	45	1.40
38231965--38231999	13	2.6	14	86	9	54	42	0	0	57	0.99
38231908--38232138	127	1.8	128	96	0	428	42	2	6	48	1.39
38232088--38232121	17	2.0	17	88	11	52	44	0	0	55	0.99
38232231--38232265	18	2.0	17	88	5	52	45	0	0	54	0.99
38232076--38232346	144	1.9	146	93	4	476	46	2	3	46	1.34
38232427--38232521	45	2.1	45	88	1	138	32	27	5	34	1.79
38232500--38232532	16	2.1	16	94	0	57	30	36	0	33	1.58
38232513--38232555	21	2.0	21	95	0	77	34	37	0	27	1.57
38232691--38232736	8	5.6	8	79	5	56	45	0	0	54	0.99
38238504--38238542	11	3.4	11	80	13	51	41	12	0	46	1.42
38238493--38238542	24	2.1	24	96	0	91	40	14	0	46	1.44
38238493--38238534	13	3.4	12	80	12	50	38	16	0	45	1.48
38245478--38245519	21	2.0	22	85	4	59	30	14	2	52	1.54
38245689--38245758	29	2.5	26	77	18	70	42	1	1	54	1.18
38245707--38245756	13	3.2	16	70	18	52	48	0	0	52	1.00
38245699--38245756	29	2.0	30	83	10	75	44	1	1	51	1.21
38246098--38246135	7	5.4	7	87	12	60	68	0	0	31	0.90
38255558--38255588	16	2.0	15	93	6	53	29	0	12	58	1.35
38257853--38257902	25	2.0	25	92	0	82	20	22	4	54	1.61
38258988--38259018	15	2.1	14	94	5	53	0	22	0	77	0.77
38261534--38261726	50	3.8	50	82	0	233	26	21	30	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38262386--38262418	11	2.9	12	86	13	52	33	0	0	66	0.92
38271705--38272044	44	7.8	43	72	9	226	28	23	18	29	1.98
38272035--38272571	128	4.2	127	89	3	812	25	24	19	31	1.98
38272035--38272571	252	2.1	255	90	2	841	25	24	19	31	1.98
38272467--38272655	103	1.8	103	96	0	351	25	25	17	31	1.97
38274019--38274084	14	4.5	15	87	11	93	15	13	0	71	1.15
38274019--38274083	7	9.0	7	83	14	80	15	13	0	70	1.16
38274960--38275024	6	11.2	6	81	6	62	12	6	12	69	1.36
38274996--38275033	16	2.2	17	90	9	60	7	5	7	78	1.07
38274990--38275034	22	2.1	21	91	4	72	8	4	8	77	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173