genome.fa.s17.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  152  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46036057--46036156	52	1.9	52	97	0	191	29	8	8	55	1.58
46037166--46037236	21	3.3	21	71	9	63	50	19	18	11	1.76
46037135--46037251	42	2.8	42	84	6	130	46	18	18	16	1.85
46037229--46037277	21	2.3	21	86	6	64	51	16	12	20	1.76
46037224--46037299	21	3.6	21	77	8	57	47	17	17	18	1.83
46040376--46042963	861	3.0	861	98	0	4962	30	24	14	31	1.94
46044034--46044068	13	2.6	13	95	4	61	34	14	20	31	1.92
46045047--46045203	43	3.7	43	84	7	178	28	29	20	22	1.98
46045047--46045203	86	1.8	85	82	6	201	28	29	20	22	1.98
46046082--46046232	49	3.0	51	76	14	195	43	9	3	43	1.52
46048128--46048237	21	5.2	21	71	15	75	46	18	21	13	1.83
46048233--46048278	21	2.2	21	84	7	58	47	10	19	21	1.80
46048127--46048258	42	3.1	41	76	4	122	46	16	20	15	1.83
46058949--46059043	24	4.0	24	71	22	65	30	22	15	31	1.95
46059866--46059930	32	2.0	32	100	0	130	40	6	12	41	1.67
46065277--46065314	2	19.0	2	100	0	76	0	50	0	50	1.00
46066322--46066411	30	3.2	28	82	14	114	32	2	1	64	1.13
46066351--46066398	18	2.7	18	70	3	53	31	2	0	66	1.03
46066325--46066437	56	2.0	58	84	6	151	32	1	1	63	1.15
46067531--46067573	22	2.0	22	86	9	61	62	0	4	32	1.15
46067544--46067585	22	2.0	21	85	4	57	66	0	7	26	1.17
46068510--46068649	40	3.5	40	77	8	144	25	17	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46073773--46073900	43	3.0	41	80	13	134	31	28	16	24	1.96
46086096--46086144	24	2.0	24	85	14	66	53	4	28	14	1.59
46089094--46089124	15	2.1	15	93	0	53	48	6	3	41	1.45
46089396--46089432	16	2.3	16	90	0	56	48	0	5	45	1.25
46089456--46089526	35	2.0	35	100	0	142	38	11	11	39	1.77
46094585--46094624	20	2.0	21	85	5	55	30	2	27	40	1.70
46099394--46099426	17	1.9	17	100	0	66	48	0	9	42	1.35
46100503--46100598	45	2.1	46	86	3	131	47	4	6	41	1.48
46105121--46105155	15	2.4	15	90	4	54	48	0	8	42	1.33
46106793--46106865	12	6.2	12	74	19	57	20	2	0	76	0.90
46106808--46106865	4	14.5	4	73	20	50	20	3	0	75	0.94
46106794--46106862	8	8.1	8	78	9	57	18	2	0	78	0.88
46106795--46106873	20	4.2	19	75	20	76	20	3	0	75	0.95
46106793--46106872	7	12.0	7	76	20	50	21	3	0	75	0.96
46108073--46108113	16	2.5	17	88	7	59	73	2	0	24	0.96
46108681--46108715	15	2.4	15	90	4	54	48	0	8	42	1.33
46113907--46113975	28	2.6	26	78	13	77	59	2	1	36	1.21
46113958--46113991	13	2.6	14	86	13	54	61	0	0	38	0.96
46113972--46114021	19	2.6	19	87	3	64	56	0	0	44	0.99
46114025--46114049	5	5.0	5	100	0	50	80	0	0	20	0.72
46113982--46114046	25	2.7	24	74	6	69	63	0	0	36	0.95
46117633--46117685	25	2.1	25	89	0	79	56	18	22	1	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46117880--46118115	104	2.3	104	84	2	287	21	30	22	25	1.99
46118000--46118337	146	2.3	145	81	5	371	20	30	23	25	1.99
46118228--46118337	41	2.7	41	84	7	125	17	32	24	25	1.96
46120480--46120512	5	6.4	5	96	3	57	21	0	0	78	0.75
46121796--46122207	125	3.3	125	88	1	603	31	17	20	30	1.96
46125400--46125618	49	4.5	49	95	0	384	45	9	2	42	1.50
46125444--46125527	29	3.2	29	62	28	78	45	9	2	42	1.49
46126038--46126080	18	2.4	18	84	0	50	46	9	25	18	1.79
46127913--46127966	11	4.9	11	78	15	58	42	0	29	27	1.56
46130676--46130760	27	3.1	27	91	0	134	17	21	37	23	1.94
46134202--46134327	33	3.8	33	76	8	114	28	11	42	17	1.85
46134204--46134327	66	1.9	66	83	9	164	28	12	41	17	1.85
46134276--46134369	33	2.9	33	75	12	88	21	11	44	22	1.84
46135439--46135474	18	2.1	17	89	5	54	63	5	0	30	1.17
46135443--46135501	28	2.2	26	82	14	68	67	8	0	23	1.17
46135478--46135734	101	2.5	102	88	5	394	53	16	0	29	1.43
46135480--46135767	101	2.8	103	86	6	392	53	16	0	29	1.46
46135962--46136083	60	2.0	60	95	0	217	54	12	0	32	1.37
46136238--46136297	4	14.8	4	76	13	52	0	31	0	68	0.90
46136238--46136297	10	5.2	12	76	15	56	0	31	0	68	0.90
46136419--46136500	27	3.0	27	96	0	146	18	35	30	15	1.92
46147130--46147190	27	2.3	26	83	5	70	62	1	0	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46147184--46147238	27	2.0	28	89	3	85	65	5	1	27	1.25
46154100--46154133	17	2.0	17	88	0	50	41	8	0	50	1.34
46154829--46154867	19	2.0	20	90	5	62	56	2	0	41	1.13
46159373--46159486	38	3.0	38	81	0	138	32	14	15	37	1.88
46160148--46160268	54	2.2	54	94	0	206	42	3	14	40	1.61
46169854--46169881	13	2.2	13	100	0	56	28	0	39	32	1.57
46169880--46169912	13	2.5	13	100	0	66	30	9	15	45	1.77
46175567--46175615	3	16.3	3	100	0	98	32	0	0	67	0.91
46185357--46185633	46	6.0	46	90	0	401	29	25	9	35	1.87
46185357--46185633	138	2.0	138	92	0	455	29	25	9	35	1.87
46192185--46192563	78	4.9	78	86	6	495	37	3	15	43	1.65
46193161--46193458	41	7.2	41	88	2	393	29	19	26	24	1.98
46199080--46199953	290	3.0	290	96	0	1604	32	25	15	26	1.95
46206668--46206800	51	2.6	51	80	0	167	40	12	6	40	1.68
46207706--46207995	96	3.0	96	92	1	465	12	33	17	36	1.88
46216770--46217896	132	8.5	132	88	3	1389	27	19	24	28	1.99
46217367--46217702	44	7.6	44	65	10	157	28	19	24	27	1.98
46216735--46217896	529	2.2	530	85	4	1542	27	19	24	28	1.99
46219717--46219757	12	3.3	12	83	6	55	36	7	9	46	1.65
46225482--46225612	67	2.0	67	89	6	203	29	32	16	22	1.95
46225706--46225821	57	2.0	60	88	10	177	23	23	23	30	1.99
46229377--46230020	44	14.7	45	73	14	327	26	22	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46229245--46229710	217	2.1	217	89	0	716	27	22	20	29	1.98
46229553--46229839	133	2.2	133	90	0	448	24	24	21	29	1.99
46229350--46230020	350	1.9	349	90	1	1058	26	22	21	29	1.99
46248618--46248655	19	2.1	18	85	14	51	44	0	2	52	1.14
46252544--46252573	15	2.0	15	93	0	51	66	3	16	13	1.37
46254232--46254306	31	2.4	31	93	0	132	22	16	20	41	1.90
46255832--46255867	18	2.0	18	88	0	54	55	5	36	2	1.38
46256164--46256230	34	1.9	35	87	3	100	31	8	14	44	1.76
46264759--46264814	20	2.9	18	79	12	58	51	1	3	42	1.29
46265260--46265307	19	2.5	20	76	10	55	33	14	8	43	1.75
46265751--46265788	3	12.7	3	100	0	76	31	0	0	68	0.90
46268637--46268667	3	10.3	3	100	0	62	32	0	0	67	0.91
46274918--46274986	23	3.0	23	85	8	104	31	24	20	23	1.98
46277573--46277716	54	2.6	54	88	1	207	33	21	16	28	1.95
46282183--46282411	51	4.5	51	78	10	220	32	27	15	24	1.95
46282183--46282407	101	2.2	100	83	4	274	32	27	15	24	1.95
46282183--46282441	101	2.6	99	78	9	256	32	28	14	25	1.94
46288880--46288948	23	3.0	23	89	0	111	33	26	18	21	1.97
46290872--46290918	20	2.4	19	82	10	58	27	4	4	63	1.31
46291189--46291251	33	1.9	33	90	0	99	26	20	31	20	1.98
46292643--46292970	163	2.0	162	93	0	566	31	15	11	41	1.83
46293770--46293803	16	2.2	16	89	5	52	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46293764--46293801	20	1.9	19	89	5	58	28	0	0	71	0.87
46293970--46294003	15	2.3	15	89	0	50	29	17	0	52	1.45
46296272--46296317	19	2.4	19	81	0	56	10	15	0	73	1.08
46298062--46298114	22	2.3	24	81	12	67	16	3	9	69	1.30
46298124--46298173	21	2.3	22	82	3	66	68	0	0	32	0.90
46303282--46303309	2	14.0	2	100	0	56	0	50	0	50	1.00
46305816--46305882	29	2.3	28	80	12	73	56	1	7	34	1.36
46305816--46305892	29	2.7	27	76	13	66	55	1	6	36	1.34
46307084--46307127	21	2.0	22	83	12	56	61	18	11	9	1.55
46309437--46309496	23	2.6	22	84	10	68	61	6	3	28	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173