genome.fa.s17.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  147  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44543914--44543950	18	2.1	18	94	0	65	67	2	29	0	1.04
44543903--44543956	22	2.4	23	76	20	60	68	1	27	1	1.10
44546927--44546993	24	2.5	27	76	18	86	53	8	1	35	1.41
44549055--44549136	38	2.2	38	93	0	137	41	2	2	53	1.27
44549170--44549291	60	2.0	60	85	3	165	54	14	0	30	1.47
44549306--44549396	8	10.4	8	71	17	65	48	16	1	34	1.54
44549332--44549640	19	16.2	19	69	20	150	54	12	0	32	1.45
44549332--44549507	27	7.1	27	81	15	213	52	13	0	32	1.45
44549332--44549639	49	7.0	43	73	19	187	54	12	0	31	1.45
44549285--44549486	49	4.1	49	83	9	250	51	14	0	32	1.49
44549552--44549638	20	4.2	21	82	11	108	58	10	2	28	1.43
44549481--44549667	61	3.1	60	70	9	164	55	12	1	31	1.44
44549707--44549732	12	2.2	12	100	0	52	46	15	0	38	1.46
44549810--44549847	3	13.3	3	83	10	53	0	36	0	63	0.95
44549806--44549847	14	3.1	14	90	10	61	0	35	0	64	0.94
44549811--44549856	11	4.3	11	83	13	51	0	39	0	60	0.97
44549813--44549859	14	3.6	13	80	16	53	0	38	0	61	0.96
44549808--44549854	20	2.3	21	85	7	69	0	38	0	61	0.96
44558046--44558105	30	2.0	30	87	3	86	16	33	28	21	1.95
44558850--44558897	19	2.5	19	80	10	53	68	0	2	29	1.01
44571173--44571268	46	2.1	46	92	5	160	45	8	15	30	1.75
44574275--44574314	21	1.9	21	84	0	53	85	2	10	2	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44574546--44574795	127	2.0	127	93	0	428	43	13	6	36	1.70
44575844--44575890	21	2.3	20	89	10	69	38	4	0	57	1.18
44575844--44575896	10	5.1	10	80	19	56	39	3	0	56	1.17
44575826--44575899	30	2.4	30	82	8	87	45	2	0	51	1.15
44576939--44576963	10	2.5	10	100	0	50	60	0	0	40	0.97
44583674--44583765	6	15.7	6	85	6	82	69	10	6	13	1.35
44583686--44583782	46	2.1	47	86	7	135	70	8	11	10	1.35
44584650--44584696	20	2.2	22	88	7	71	76	2	10	10	1.10
44585999--44586349	50	7.0	50	66	7	201	32	22	19	25	1.98
44585999--44586838	100	8.7	99	77	11	699	32	23	19	24	1.97
44586262--44586434	85	2.0	85	94	0	301	30	24	19	26	1.98
44586384--44586534	50	3.0	50	73	3	169	30	23	19	26	1.98
44586162--44586719	185	3.0	185	89	1	841	32	24	18	25	1.97
44586447--44586619	85	2.0	85	89	0	265	31	26	17	24	1.97
44586532--44586838	50	6.1	50	68	5	163	34	22	17	24	1.96
44594254--44594353	43	2.3	43	96	0	182	26	10	21	43	1.83
44594518--44594594	20	3.8	20	73	13	86	58	3	3	33	1.35
44598986--44599215	50	4.6	50	86	2	286	20	29	23	26	1.99
44607910--44607947	11	3.5	11	92	0	58	23	2	21	52	1.59
44610912--44610986	32	2.3	32	97	0	141	44	6	21	28	1.77
44616681--44616978	147	2.0	148	92	0	490	32	13	17	36	1.89
44619360--44619391	16	2.0	16	93	0	55	59	21	0	18	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44623902--44623941	6	6.2	6	86	13	53	80	0	20	0	0.72
44623902--44623968	7	9.6	7	84	12	50	74	5	19	0	1.02
44624241--44624286	20	2.3	20	96	0	83	39	28	4	28	1.76
44624759--44624798	20	2.0	20	90	9	64	70	0	0	30	0.88
44624759--44624791	10	3.3	10	87	12	50	69	0	0	30	0.88
44625069--44625111	4	10.8	4	80	9	52	74	0	4	20	1.00
44627318--44627565	96	2.6	95	84	3	300	36	2	17	43	1.63
44628114--44628159	11	4.2	11	78	18	51	43	0	32	23	1.54
44628120--44628162	10	4.0	10	82	14	50	46	0	30	23	1.52
44632819--44632857	14	2.8	14	84	0	51	38	17	5	38	1.72
44634068--44634376	32	9.7	32	79	8	299	40	15	11	31	1.84
44634079--44634361	64	4.4	64	91	0	449	39	16	12	32	1.85
44634083--44634363	96	2.9	95	84	3	384	39	16	12	32	1.85
44636568--44636618	23	2.2	23	93	6	86	15	17	31	35	1.92
44636604--44636664	22	2.7	22	82	2	68	14	21	22	40	1.90
44636575--44636664	23	4.0	23	80	1	74	16	18	25	38	1.92
44637777--44637805	15	1.9	15	100	0	58	72	6	13	6	1.26
44638692--44638873	69	2.6	70	86	9	255	28	5	1	64	1.22
44642608--44642651	19	2.3	19	84	4	61	34	6	11	47	1.66
44647806--44647975	86	2.0	86	92	0	286	34	18	22	25	1.96
44650826--44650894	27	2.6	27	77	11	70	47	11	13	27	1.76
44651040--44651078	19	2.1	18	90	4	60	30	17	23	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44654117--44654171	18	2.8	19	83	10	58	5	16	1	76	1.06
44655486--44655853	184	2.0	184	94	0	646	17	23	20	39	1.93
44657705--44657784	27	2.9	28	80	14	87	50	8	12	28	1.70
44659333--44660076	44	16.8	44	78	4	638	34	17	19	28	1.95
44659333--44660079	89	8.4	89	81	3	652	34	17	19	27	1.95
44659333--44660080	133	5.6	134	83	3	760	34	17	19	27	1.95
44659746--44660124	132	2.9	131	80	5	311	32	17	23	26	1.96
44661545--44661676	69	2.0	67	86	5	187	26	6	3	63	1.35
44669770--44669833	31	2.1	31	93	0	110	32	17	20	29	1.95
44671398--44671438	9	3.9	11	78	21	52	21	0	0	78	0.76
44671406--44671438	14	2.3	14	94	5	57	18	0	0	81	0.68
44690084--44690161	31	2.5	31	83	6	97	20	11	23	44	1.84
44691142--44691205	22	2.9	22	95	0	119	29	7	12	50	1.68
44692608--44692665	26	2.2	25	87	9	80	67	0	5	27	1.12
44692607--44692665	28	2.2	26	87	6	82	67	0	5	27	1.11
44693156--44693199	6	7.2	6	79	5	52	18	2	43	36	1.63
44693328--44693396	35	2.0	35	97	0	129	27	30	28	13	1.94
44693898--44693942	17	2.6	18	89	7	74	44	4	0	51	1.21
44696850--44696898	19	2.6	19	93	0	89	40	0	22	36	1.54
44699225--44699311	27	3.3	27	85	1	113	19	27	18	34	1.95
44699317--44699461	57	2.5	57	86	2	202	25	23	12	38	1.90
44700837--44700870	9	3.8	9	92	0	50	44	14	14	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44700834--44700870	18	2.1	18	94	0	65	45	13	13	27	1.81
44701084--44701143	30	2.0	31	86	3	86	20	40	0	40	1.52
44701909--44701934	5	5.2	5	100	0	52	19	19	19	42	1.90
44707996--44708034	21	2.0	21	85	10	55	20	0	2	76	0.90
44710554--44710596	21	2.0	22	82	13	63	79	2	4	13	1.00
44716341--44716389	24	2.0	24	88	0	71	38	14	16	30	1.88
44716886--44716920	18	1.9	18	94	0	61	11	37	25	25	1.90
44716886--44716927	18	2.3	18	87	4	57	11	33	26	28	1.92
44718143--44718178	14	2.4	16	90	9	58	27	2	2	66	1.19
44730572--44730611	19	2.2	19	86	4	55	10	0	12	77	0.99
44730558--44730625	31	2.3	29	78	14	84	14	0	14	70	1.17
44734125--44734370	37	6.7	37	81	5	257	17	12	30	39	1.87
44734125--44734324	111	1.8	111	89	4	314	17	14	29	39	1.88
44734124--44734358	111	2.1	112	84	7	309	17	12	30	38	1.88
44736795--44736851	22	2.6	22	82	0	69	36	24	14	24	1.92
44747211--44747319	54	2.0	54	100	0	218	33	24	9	33	1.87
44747237--44747328	29	3.3	29	66	22	88	32	23	7	35	1.83
44747960--44748171	102	2.1	103	96	0	390	36	19	5	37	1.76
44754356--44754381	5	5.2	5	100	0	52	38	19	19	23	1.93
44755186--44755246	30	2.0	31	93	3	106	37	0	42	19	1.52
44758584--44758654	23	3.1	23	83	0	106	22	21	25	30	1.98
44759287--44759541	127	2.0	127	100	0	510	38	10	16	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44763143--44763210	33	2.1	33	100	0	136	54	2	16	26	1.56
44776712--44776766	4	13.8	4	96	0	101	25	25	0	49	1.51
44778946--44779080	41	3.3	41	82	2	164	22	25	18	33	1.97
44780554--44780652	42	2.4	42	84	6	121	30	27	21	21	1.98
44784268--44784331	15	4.1	15	75	18	58	76	1	20	1	0.95
44784309--44784353	15	2.9	15	80	9	54	75	2	20	2	1.01
44785172--44785508	85	4.0	84	83	4	403	31	19	16	33	1.94
44791515--44791547	15	2.1	16	94	5	59	42	15	0	42	1.46
44800296--44800338	14	2.9	15	76	16	54	34	2	11	51	1.51
44800494--44800649	41	3.8	41	86	3	190	19	21	26	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173