genome.fa.s17.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  115  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35599778--35599829	21	2.5	22	81	9	56	34	1	5	57	1.33
35599765--35599840	31	2.6	29	77	8	82	35	1	3	59	1.24
35599909--35599937	15	2.0	15	93	6	51	27	0	0	72	0.85
35603135--35603178	13	3.5	13	84	9	56	45	2	0	52	1.13
35612685--35612723	19	2.1	19	85	0	51	43	0	5	51	1.24
35613623--35613670	21	2.3	21	77	0	51	35	2	16	45	1.59
35626442--35626479	18	2.1	18	100	0	76	10	13	26	50	1.73
35627076--35627126	20	2.6	20	81	9	61	19	5	5	68	1.31
35627383--35627433	21	2.3	23	80	12	63	37	0	5	56	1.23
35627857--35627905	21	2.3	21	79	10	55	63	0	0	36	0.95
35636656--35636687	15	2.1	15	94	0	55	68	9	6	15	1.36
35648119--35648163	22	2.0	22	83	8	56	44	4	0	51	1.21
35656811--35656937	19	6.5	19	80	6	146	40	7	11	40	1.69
35656805--35656914	38	2.9	38	95	0	193	42	8	10	39	1.68
35656906--35656971	21	3.0	21	88	4	96	33	4	15	46	1.66
35660051--35660080	3	10.0	3	100	0	60	33	0	33	33	1.58
35672684--35672711	7	4.0	7	100	0	56	28	28	0	42	1.56
35681947--35682071	45	2.8	46	80	11	118	44	15	20	20	1.87
35681994--35682100	45	2.4	45	79	3	117	43	14	21	20	1.86
35687993--35688069	33	2.3	33	97	0	145	44	32	11	11	1.77
35689318--35689496	29	6.1	29	80	7	112	25	27	12	34	1.92
35689318--35689402	30	2.9	30	86	8	104	20	28	15	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35689391--35689518	29	4.4	29	87	0	175	29	27	8	34	1.87
35690004--35690041	19	2.1	18	85	14	51	52	10	0	36	1.36
35697371--35697414	23	1.9	23	90	0	70	61	4	2	31	1.28
35697375--35697417	11	3.8	11	80	17	52	65	2	2	30	1.18
35698030--35698062	17	1.9	17	100	0	66	9	6	24	60	1.49
35710965--35710995	2	15.5	2	100	0	62	51	48	0	0	1.00
35710995--35711041	2	23.5	2	95	0	85	53	0	46	0	1.00
35712289--35712340	26	2.0	26	100	0	104	42	19	11	26	1.85
35714623--35714663	14	3.1	13	83	16	57	34	0	4	60	1.18
35722819--35722866	25	1.9	25	83	8	62	22	2	4	70	1.15
35726839--35727099	129	2.0	129	86	1	362	36	13	20	29	1.91
35729379--35729407	14	2.1	14	100	0	58	20	6	13	58	1.58
35737453--35737493	9	4.3	9	87	9	55	21	4	0	73	1.02
35737488--35737531	21	2.0	22	91	4	72	38	2	0	59	1.10
35739622--35739661	20	2.1	19	90	4	62	17	0	5	77	0.94
35739644--35739704	23	2.7	22	81	18	72	18	3	8	70	1.26
35739691--35739753	32	2.1	32	85	8	87	20	3	7	68	1.29
35754729--35754805	33	2.3	33	84	0	91	63	9	14	12	1.51
35754746--35754796	22	2.3	22	83	6	59	64	5	15	13	1.46
35757051--35757092	11	3.9	11	81	6	59	50	0	0	50	1.00
35757134--35757194	19	3.2	20	77	17	67	62	3	9	24	1.41
35757267--35757340	19	3.8	19	80	3	76	33	4	1	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35757251--35757384	9	14.4	9	69	12	74	29	2	2	64	1.23
35759810--35759928	40	3.1	39	75	14	120	33	21	15	29	1.94
35759807--35759942	40	3.4	41	72	16	117	33	22	15	28	1.95
35760073--35760122	15	3.2	15	76	20	57	50	14	0	36	1.43
35760100--35760146	24	2.0	24	84	16	62	51	17	0	31	1.46
35762377--35762410	16	2.1	16	88	0	50	41	2	11	44	1.56
35763471--35763507	13	2.8	13	100	0	74	45	8	0	45	1.32
35763670--35763721	21	2.3	23	87	6	72	57	3	0	38	1.17
35764177--35764216	21	1.9	21	85	10	55	37	0	2	60	1.11
35764934--35764991	25	2.2	25	78	6	62	39	0	0	60	0.97
35764945--35765006	26	2.4	25	81	10	70	32	0	0	67	0.91
35769795--35769872	22	3.5	22	69	19	61	34	12	19	33	1.90
35769884--35769960	39	2.0	39	84	5	102	41	15	23	19	1.89
35769893--35769995	39	2.6	39	78	0	98	41	16	21	20	1.90
35769923--35770229	93	3.3	93	86	1	384	39	16	20	22	1.92
35770147--35770391	54	4.5	54	82	0	283	39	17	20	23	1.92
35770396--35770551	78	2.0	78	83	2	197	40	14	21	24	1.90
35770606--35770708	54	1.9	54	84	4	136	36	20	19	23	1.95
35770713--35770869	42	3.8	41	73	5	138	40	13	21	24	1.89
35770857--35770961	54	1.9	54	83	7	133	39	14	20	25	1.91
35770879--35771145	147	1.8	147	82	4	342	43	16	17	22	1.88
35771203--35771476	42	6.6	42	75	6	182	40	16	22	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35771453--35771629	54	3.3	53	83	3	219	35	17	22	25	1.95
35770789--35772454	654	2.6	640	78	5	1743	40	15	21	23	1.91
35771856--35771938	39	2.1	39	86	0	112	40	16	24	18	1.90
35771858--35772165	42	7.5	42	80	2	275	37	15	25	21	1.92
35771884--35772165	83	3.4	83	86	3	356	38	14	25	21	1.92
35772307--35772427	54	2.2	54	79	7	147	42	15	18	23	1.89
35772490--35772664	77	2.3	77	97	3	327	48	20	10	21	1.78
35778988--35779039	24	2.2	24	89	0	77	57	7	1	32	1.38
35780181--35780249	28	2.5	28	92	4	113	40	10	1	47	1.46
35780768--35780844	36	2.2	35	81	11	95	35	0	10	54	1.35
35781470--35781508	18	2.2	18	95	0	69	30	2	51	15	1.57
35781477--35781514	18	2.1	18	90	0	58	36	7	47	7	1.62
35785967--35785998	15	2.1	15	100	0	64	40	6	0	53	1.26
35786791--35786860	26	2.7	26	80	12	74	0	31	0	68	0.90
35786787--35786977	36	5.2	37	77	16	161	1	31	0	67	0.98
35786818--35786978	4	41.0	4	70	17	63	1	31	0	67	0.99
35786793--35786973	34	5.2	34	76	16	133	1	31	0	67	0.98
35786851--35786909	19	3.1	19	76	9	75	0	28	0	71	0.87
35787020--35787089	27	2.6	27	84	4	88	15	24	30	30	1.96
35801497--35801595	49	2.0	49	100	0	198	30	16	15	38	1.89
35809210--35809255	6	7.5	6	81	13	58	78	2	0	19	0.86
35810451--35810493	3	14.7	3	92	4	70	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35816250--35816312	31	2.0	32	96	3	119	31	9	15	42	1.79
35816611--35816636	3	8.7	3	100	0	52	30	0	0	69	0.89
35826912--35827025	22	5.2	22	63	16	65	50	9	2	37	1.49
35826912--35827148	44	5.4	44	93	2	386	49	10	2	37	1.52
35827077--35827146	22	3.2	22	64	22	56	47	12	1	38	1.51
35827306--35827387	35	2.3	37	79	12	107	24	30	25	19	1.98
35827564--35827646	22	3.4	24	75	22	91	62	0	14	22	1.31
35827881--35827920	21	1.9	21	89	0	62	65	2	7	25	1.32
35827959--35828003	16	2.9	15	87	9	54	66	0	11	22	1.22
35828072--35828152	23	3.3	23	78	13	83	46	0	18	34	1.49
35828088--35828160	11	6.7	10	73	16	56	50	0	19	30	1.48
35828300--35828333	6	5.8	6	96	3	61	52	0	29	17	1.45
35830881--35831297	90	4.6	90	91	1	624	52	15	7	24	1.68
35830914--35831357	180	2.5	179	85	4	486	52	15	7	24	1.69
35830914--35831409	270	1.8	269	83	6	653	52	16	6	24	1.67
35831961--35832172	111	1.9	109	91	2	345	31	22	20	26	1.98
35835695--35835771	20	3.8	20	78	11	77	41	1	1	55	1.16
35835699--35835782	10	8.2	10	70	18	57	44	1	1	53	1.16
35835953--35836009	27	2.0	29	86	6	82	50	5	3	40	1.42
35837313--35837359	16	2.8	17	74	6	51	53	19	0	27	1.45
35837552--35837607	27	2.1	27	93	0	94	37	16	8	37	1.80
35840548--35840610	21	3.0	21	76	21	69	36	15	22	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35844696--35844890	50	3.9	50	89	0	291	26	22	30	21	1.99
35846337--35846408	31	2.3	31	85	4	92	31	13	5	48	1.66
35846337--35846428	31	3.0	31	80	10	82	30	16	6	46	1.72
35852201--35852269	35	2.0	35	88	5	104	50	20	13	15	1.77
35859485--35859514	13	2.2	14	94	5	53	10	26	30	33	1.89
35861690--35861725	18	1.9	18	88	5	54	58	2	0	38	1.13
35861718--35861768	16	3.2	16	70	13	52	49	0	3	47	1.20
35861815--35861839	13	1.9	13	100	0	50	32	0	4	64	1.12
35866876--35866907	15	2.1	15	94	0	55	15	6	9	68	1.36
35874045--35874088	22	2.0	23	90	4	72	36	4	18	40	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173