genome.fa.s17.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  67  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20003038--20003220	40	4.6	40	91	0	285	26	21	28	22	1.99
20003040--20003247	80	2.6	80	89	0	283	25	20	28	24	1.99
20006002--20006264	40	6.6	40	87	3	316	24	20	28	26	1.99
20006041--20006298	80	3.3	80	83	3	229	25	20	28	25	1.99
20025162--20026113	480	2.0	480	92	0	1589	23	20	19	36	1.95
20034729--20034874	67	2.2	66	82	1	175	22	20	39	17	1.92
20038110--20038163	21	2.7	20	74	5	54	29	1	1	66	1.12
20055864--20056076	75	2.8	76	86	2	302	34	26	16	22	1.95
20063873--20063922	25	2.0	25	96	0	91	34	12	14	40	1.82
20068021--20068175	43	3.7	43	74	6	136	37	25	16	21	1.93
20067982--20068174	85	2.3	84	87	0	260	36	24	16	22	1.94
20069244--20069324	11	6.8	12	67	14	51	43	9	11	35	1.74
20069244--20069324	24	3.4	24	84	0	108	43	9	11	35	1.74
20074223--20074274	20	2.6	20	87	0	77	50	1	26	21	1.59
20087459--20087496	10	3.5	11	86	13	53	63	2	0	34	1.09
20094540--20094569	15	2.0	15	93	0	51	33	23	0	43	1.54
20097346--20097451	47	2.3	47	86	3	151	33	19	16	29	1.94
20097504--20097543	20	2.0	20	90	9	64	45	15	0	40	1.46
20098561--20098607	24	1.9	24	86	4	67	36	0	38	25	1.56
20099262--20099532	27	10.1	26	85	5	283	42	20	15	21	1.89
20099262--20099532	54	5.0	54	86	3	341	42	20	15	21	1.89
20099266--20099532	107	2.5	108	83	3	333	42	20	15	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20099266--20099533	134	2.0	135	86	3	371	42	20	15	22	1.89
20100047--20100129	42	2.0	42	97	0	157	33	19	8	38	1.82
20101120--20101193	26	2.8	26	75	0	76	25	21	20	32	1.97
20101273--20101473	28	7.2	29	85	6	256	25	23	20	30	1.98
20101273--20101473	84	2.4	84	88	0	314	25	23	20	30	1.98
20105974--20106068	48	2.0	48	87	2	136	25	13	15	45	1.83
20135849--20135904	11	5.4	10	77	12	51	25	37	1	35	1.66
20139175--20139398	40	5.7	40	83	5	233	25	27	21	25	1.99
20139175--20139391	79	2.7	79	79	9	235	26	27	20	25	1.99
20146779--20146933	39	4.0	39	86	6	192	26	28	19	25	1.99
20146806--20146950	76	1.9	78	82	5	188	26	27	18	27	1.98
20160117--20160144	3	9.3	3	100	0	56	67	0	32	0	0.91
20167638--20167872	50	4.7	50	83	5	273	21	28	22	27	1.99
20185987--20186037	24	2.1	24	85	0	66	23	25	17	33	1.96
20210954--20211003	24	2.1	24	92	0	82	24	32	18	26	1.97
20210959--20211010	24	2.2	24	89	0	77	26	34	13	25	1.93
20218039--20218118	21	3.9	21	75	3	83	16	22	17	43	1.87
20223357--20223392	18	1.9	19	88	5	56	44	11	19	25	1.83
20234188--20234370	101	1.8	102	89	3	289	23	18	26	31	1.97
20234178--20234368	51	3.8	51	77	11	212	23	17	27	31	1.97
20234594--20234625	16	2.0	16	93	0	55	59	0	15	25	1.36
20237120--20237150	15	2.1	15	93	0	53	54	9	12	22	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20241146--20241185	20	2.0	20	85	9	55	40	12	10	37	1.77
20245817--20246040	104	2.2	104	93	1	378	17	19	31	31	1.95
20245959--20246110	71	2.1	72	92	1	252	23	17	29	30	1.97
20248282--20248396	57	2.0	58	93	1	196	37	6	19	36	1.79
20257593--20257643	24	2.2	24	89	6	79	41	31	17	9	1.82
20261512--20261561	23	2.2	22	82	3	64	74	10	0	16	1.08
20266221--20266288	31	2.2	30	80	12	77	67	7	7	17	1.38
20267592--20267798	43	4.8	43	83	0	227	30	23	16	28	1.96
20267690--20267820	43	3.1	42	83	4	120	33	22	15	28	1.94
20268102--20268169	30	2.3	30	87	2	93	20	11	20	47	1.81
20268171--20268210	21	1.9	21	84	0	53	2	32	17	47	1.61
20269644--20269829	92	2.0	92	86	0	255	43	5	18	32	1.72
20270625--20270806	27	6.8	27	78	7	126	22	12	20	44	1.85
20270625--20270792	53	3.2	52	81	5	151	22	12	19	45	1.84
20270675--20270807	27	5.0	27	84	7	164	23	12	20	44	1.84
20277419--20277506	34	2.7	33	96	3	160	29	5	5	59	1.44
20290140--20290181	18	2.2	20	83	8	52	61	0	2	35	1.09
20290508--20290574	28	2.3	30	82	12	77	46	2	5	44	1.43
20303334--20303417	43	2.0	43	86	9	120	48	2	22	26	1.62
20303613--20303820	111	1.9	111	96	0	389	36	18	21	23	1.95
20306041--20306087	23	2.0	23	100	0	94	21	29	4	44	1.71
20317203--20317275	31	2.4	31	83	4	85	52	6	1	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20317235--20317288	22	2.5	21	76	5	54	51	9	1	37	1.45
20317945--20317980	18	1.9	19	88	5	56	5	5	47	41	1.50
20318124--20318156	12	2.8	12	100	0	66	15	18	48	18	1.81
20319563--20319610	7	6.7	7	77	13	53	75	2	2	20	1.02
20319563--20319610	21	2.2	22	88	3	71	75	2	2	20	1.02
20319971--20320003	17	1.9	17	93	0	57	69	0	0	30	0.88
20326893--20327293	151	2.7	149	85	2	500	22	31	21	23	1.98
20333606--20333751	20	7.3	20	65	9	64	17	28	17	36	1.93
20333603--20333765	40	4.1	40	83	3	220	18	28	17	35	1.94
20337309--20337365	20	2.8	20	81	0	60	49	0	29	21	1.50
20340664--20340744	26	3.1	26	90	0	126	37	23	19	19	1.95
20340915--20341074	27	6.0	27	84	1	205	20	17	20	41	1.91
20340938--20341001	26	2.4	27	89	2	94	28	20	10	40	1.86
20341967--20341998	16	2.0	16	93	0	55	40	6	9	43	1.62
20342162--20342289	50	2.5	51	79	3	134	23	19	28	28	1.98
20356648--20356693	24	1.9	24	86	0	65	45	13	26	15	1.82
20359216--20359248	14	2.3	15	89	5	50	27	15	33	24	1.95
20360653--20360897	132	1.9	132	86	5	352	28	19	23	29	1.98
20361208--20361318	19	5.8	19	82	0	141	40	9	13	36	1.76
20361215--20361318	38	2.7	38	92	0	172	41	8	11	38	1.72
20368033--20368077	22	2.0	22	87	8	65	53	20	0	26	1.46
20373680--20373901	40	5.7	40	83	9	278	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20373680--20373901	39	5.7	39	84	9	274	25	27	22	24	2.00
20373682--20373894	116	1.8	118	84	8	292	25	26	22	25	2.00
20381627--20381811	79	2.3	81	84	7	236	25	27	22	24	2.00
20381627--20381811	40	4.7	40	83	7	234	25	27	22	24	2.00
20397484--20397535	20	2.5	21	75	12	54	75	1	17	5	1.10
20397561--20397594	18	1.9	18	88	5	52	64	2	26	5	1.30
20402156--20402181	9	2.9	9	100	0	52	69	11	0	19	1.18
20413935--20413967	15	2.1	16	88	5	50	75	6	15	3	1.11
20414823--20414913	41	2.2	41	92	0	146	36	17	17	28	1.93
20414847--20415649	216	3.7	215	88	1	1178	27	23	19	30	1.98
20415076--20415795	388	1.9	387	80	4	849	26	23	19	30	1.98
20415418--20415793	172	2.2	172	88	2	432	26	24	19	30	1.98
20415490--20415759	85	3.2	85	71	10	269	26	25	18	29	1.98
20414797--20415733	432	2.2	428	83	5	1242	27	23	19	30	1.98
20415873--20416040	88	1.9	88	83	0	219	25	26	22	26	2.00
20418345--20418378	6	5.7	6	85	0	50	0	17	2	79	0.86
20418342--20418378	12	3.1	12	88	0	56	0	21	2	75	0.92
20424780--20424813	16	2.2	15	89	5	50	79	5	14	0	0.91
20427560--20427731	79	2.2	80	85	7	226	27	20	26	25	1.99
20427507--20427731	40	5.7	40	85	5	253	26	21	26	25	2.00
20427507--20427737	119	1.9	120	82	9	285	27	21	26	24	1.99
20427581--20427764	79	2.3	79	80	9	189	28	21	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20430307--20430359	26	2.0	26	85	0	70	24	32	18	24	1.97
20430692--20430775	41	2.0	41	100	0	168	39	16	16	27	1.90
20432984--20433101	40	3.0	40	77	5	123	16	29	17	35	1.93
20433010--20433101	20	4.6	20	75	5	78	18	28	17	35	1.93
20439134--20439202	13	5.2	13	75	3	57	30	20	2	46	1.65
20439093--20439202	53	2.1	53	83	6	134	32	19	2	45	1.64
20439108--20439193	40	2.2	39	85	2	109	33	18	3	44	1.67
20439138--20439189	27	1.9	27	84	0	68	30	19	3	46	1.68
20439119--20439203	40	2.2	40	80	6	93	30	22	3	43	1.70
20450354--20450387	2	17.0	2	93	0	59	52	47	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173