genome.fa.s17.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  35  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9357091--9357115	13	1.9	13	100	0	50	24	28	0	48	1.52
9364031--9364090	22	2.8	22	80	7	70	38	18	25	18	1.93
9364029--9364150	49	2.6	46	82	14	135	39	18	23	18	1.92
9364068--9364150	25	3.4	24	93	1	130	39	19	21	19	1.92
9376198--9376255	27	2.1	28	84	9	75	37	0	0	62	0.96
9376213--9376265	27	2.0	26	85	14	72	32	0	1	66	1.03
9384518--9384647	61	2.2	60	85	8	171	36	18	10	34	1.86
9387455--9387499	21	2.1	21	84	8	56	51	22	11	15	1.75
9394051--9394083	17	1.9	17	93	0	57	21	6	9	63	1.45
9398480--9398519	19	2.1	19	86	9	55	60	5	0	35	1.19
9410638--9410668	4	7.8	4	100	0	62	48	0	0	51	1.00
9415352--9415484	57	2.3	57	78	6	153	31	20	25	22	1.98
9418055--9418111	20	2.8	21	81	7	73	14	21	40	24	1.90
9418111--9418157	22	2.1	22	84	0	58	17	10	44	27	1.81
9418518--9418686	90	1.9	90	86	4	243	41	3	5	49	1.42
9420804--9420883	27	2.7	28	84	11	90	15	23	31	30	1.95
9420621--9420978	104	3.4	104	85	0	457	19	18	28	32	1.96
9430963--9430993	9	3.4	9	95	0	53	41	0	0	58	0.98
9431209--9431252	22	2.0	22	82	8	54	54	2	0	43	1.12
9432252--9432301	20	2.5	20	71	15	50	48	2	0	50	1.12
9442520--9442621	31	3.3	31	80	13	113	30	1	0	67	1.01
9442535--9442592	17	3.5	17	75	15	68	27	1	0	70	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9442535--9442643	31	3.4	32	83	5	132	30	2	0	66	1.05
9443840--9443876	13	2.7	14	84	16	51	21	5	5	67	1.31
9444782--9445335	114	4.9	114	88	0	815	28	25	21	25	1.99
9474671--9474712	20	2.1	20	86	0	57	64	0	2	33	1.07
9474882--9474928	22	2.0	24	84	8	62	31	0	0	68	0.90
9474954--9474986	17	2.0	17	94	5	59	18	12	6	63	1.48
9475760--9475852	31	3.1	30	81	6	107	46	5	4	44	1.46
9477090--9477156	29	2.3	30	79	7	84	22	14	20	41	1.89
9477097--9477151	29	1.9	29	88	3	85	25	14	20	40	1.90
9477439--9477493	29	1.9	29	85	3	76	41	20	12	25	1.87
9486024--9486050	14	1.9	14	100	0	54	37	3	7	51	1.48
9501300--9501360	31	2.1	31	81	9	74	26	13	13	47	1.79
9506340--9506372	16	2.1	16	94	0	57	33	0	36	30	1.58
9506351--9506445	45	2.1	44	88	1	136	34	5	27	32	1.79
9506607--9506641	18	2.0	17	88	5	52	54	0	0	45	0.99
9506565--9506637	27	2.7	27	76	8	76	52	2	0	45	1.15
9506526--9506794	141	1.9	146	92	6	467	46	3	2	46	1.34
9506948--9506994	17	2.9	16	78	18	53	46	2	6	44	1.40
9506967--9507000	17	2.0	17	94	0	59	50	0	5	44	1.26
9507033--9507226	92	2.1	91	88	5	284	46	4	4	44	1.41
9508629--9508655	11	2.5	11	100	0	54	51	18	7	22	1.70
9515705--9515762	21	2.7	21	86	2	80	60	0	3	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9517188--9517431	50	4.7	50	86	3	308	22	29	22	25	1.99
9517187--9517436	100	2.4	105	86	5	339	22	29	22	25	1.99
9517770--9517827	30	1.9	30	85	0	80	29	22	5	43	1.75
9522064--9522107	17	2.7	17	89	6	65	36	2	18	43	1.63
9522321--9522490	41	4.1	41	91	0	268	29	18	28	24	1.98
9522328--9522490	82	2.0	82	97	0	308	29	19	27	23	1.98
9522685--9522794	37	3.3	34	79	14	106	28	10	27	33	1.90
9522705--9522794	37	2.5	37	85	7	116	28	10	25	35	1.88
9526199--9526225	12	2.2	12	100	0	54	7	51	7	33	1.58
9526468--9526708	119	2.0	119	96	0	446	32	22	13	31	1.92
9527910--9528203	50	5.7	50	87	2	354	22	29	22	25	1.99
9528544--9528601	30	1.9	30	89	0	89	29	24	5	41	1.76
9531031--9531087	7	8.0	7	83	9	53	61	0	0	38	0.96
9531046--9531093	15	3.3	15	82	11	64	70	0	0	29	0.87
9531029--9531077	21	2.4	20	82	3	62	65	0	0	34	0.93
9531178--9531207	4	7.2	4	96	3	51	26	0	0	73	0.84
9536640--9536677	18	2.1	19	95	5	69	63	0	0	36	0.95
9536628--9536689	31	2.0	31	84	12	83	62	1	0	35	1.05
9536750--9536832	20	3.8	22	87	12	127	61	0	0	38	0.96
9536859--9536906	24	2.0	24	91	0	78	75	6	0	18	1.01
9536867--9536911	20	2.2	20	81	14	56	75	4	2	17	1.07
9538933--9538968	18	1.9	19	88	5	56	19	11	19	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9541593--9541625	10	3.2	11	87	12	52	78	0	0	21	0.75
9542215--9542239	11	2.3	11	100	0	50	36	0	0	64	0.94
9542223--9542286	25	2.5	26	70	7	60	37	1	4	56	1.30
9547858--9547884	13	2.1	13	100	0	54	55	0	0	44	0.99
9554445--9554640	82	2.4	82	88	0	302	25	19	27	27	1.99
9554450--9554603	41	3.8	41	98	0	299	25	22	27	24	2.00
9557742--9557938	43	4.7	41	76	11	182	32	25	18	23	1.97
9557707--9557947	42	5.7	41	75	10	200	32	25	17	25	1.96
9557699--9557938	85	2.8	85	86	2	304	32	25	18	24	1.97
9559315--9559362	25	2.0	25	91	4	80	35	18	27	18	1.95
9562742--9562804	30	2.1	30	90	0	99	11	33	30	25	1.90
9564455--9564487	14	2.3	15	89	5	50	0	24	0	75	0.80
9572226--9572601	187	2.0	187	96	0	698	39	17	12	30	1.86
9572834--9572889	25	2.3	25	71	3	60	35	23	21	19	1.96
9572897--9572956	27	2.2	28	83	13	74	36	18	25	20	1.94
9573040--9573110	24	2.9	24	77	4	70	36	21	26	15	1.93
9573416--9573455	21	1.9	21	84	0	53	40	22	0	37	1.54
9588890--9589410	261	2.0	261	95	0	927	32	18	15	34	1.92
9591511--9591631	61	2.0	61	85	3	163	40	4	13	42	1.63
9597836--9597869	17	2.0	18	88	11	54	50	0	8	41	1.34
9598230--9598313	36	2.3	36	87	6	116	27	26	20	26	1.99
9598368--9598421	22	2.4	22	84	3	72	31	24	11	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9606989--9607171	87	2.1	87	81	4	208	37	13	25	22	1.91
9606986--9607233	29	8.5	29	75	7	146	37	12	26	22	1.91
9607185--9607246	29	2.1	30	84	3	81	37	16	24	22	1.94
9609195--9609264	9	7.8	9	93	0	104	38	27	10	24	1.87
9610700--9610738	20	2.0	20	100	0	78	25	30	5	38	1.78
9610813--9611086	68	4.0	68	77	10	238	27	23	11	37	1.89
9611024--9611152	68	1.9	68	81	0	159	31	23	9	36	1.86
9623091--9623139	9	5.4	9	87	0	71	38	24	10	26	1.87
9623091--9623139	18	2.7	18	93	0	80	38	24	10	26	1.87
9623260--9623303	18	2.4	18	88	0	61	13	2	43	40	1.57
9631118--9631166	23	2.1	23	85	7	64	44	2	8	44	1.45
9632552--9632585	16	2.2	15	89	5	50	50	5	5	38	1.51
9638639--9638686	23	2.1	23	88	0	69	50	8	2	39	1.44
9641714--9641763	25	2.0	25	84	11	66	36	22	0	42	1.54
9642649--9642696	8	6.3	7	83	11	51	58	0	0	41	0.98
9642649--9642761	5	21.8	5	77	13	79	56	1	0	41	1.09
9652909--9652972	33	1.9	33	93	0	110	53	0	3	43	1.16
9653903--9653945	3	14.7	3	81	13	54	65	4	30	0	1.13
9654379--9654436	9	6.4	9	76	7	64	43	18	8	29	1.80
9654379--9654436	18	3.2	18	85	0	71	43	18	8	29	1.80
9654545--9654569	13	1.9	13	100	0	50	12	0	48	40	1.40
9657120--9657353	122	1.9	122	83	7	305	42	14	13	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9671755--9671899	72	2.0	72	100	0	290	28	26	11	33	1.90
9682127--9682156	16	1.9	16	93	6	53	50	20	0	30	1.49
9682674--9683211	269	2.0	269	99	0	1058	35	23	7	32	1.84
9683501--9683624	25	5.0	25	72	14	87	32	14	23	29	1.94
9683505--9683648	49	2.9	49	84	7	168	33	15	22	28	1.95
9683548--9683648	25	4.1	25	83	6	109	33	16	22	26	1.96
9685426--9685457	16	2.0	16	100	0	64	62	6	12	18	1.50
9694191--9694240	16	3.2	16	85	2	66	48	4	18	30	1.66
9710159--9710306	41	3.6	41	80	5	147	22	20	28	28	1.99
9711619--9711663	9	5.1	9	82	15	58	44	0	2	53	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173