genome.fa.s17.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  99  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30839999--30840066	14	4.4	15	72	24	52	44	0	2	52	1.16
30840030--30840071	14	2.9	15	79	10	52	50	0	0	50	1.00
30840084--30840120	16	2.3	16	86	13	58	40	0	0	59	0.97
30840115--30840172	24	2.3	24	88	8	80	56	0	0	43	0.99
30840115--30840185	25	2.8	25	83	10	67	53	0	0	46	1.00
30841699--30841827	66	2.0	66	95	0	231	45	20	3	29	1.69
30843572--30843614	21	2.0	21	81	0	50	39	6	18	34	1.78
30845980--30846158	63	2.8	63	81	1	207	36	29	7	26	1.84
30873914--30873996	44	1.9	43	90	2	130	49	2	21	26	1.62
30879044--30879118	37	2.0	37	94	0	132	33	17	6	42	1.75
30887114--30887235	40	3.0	39	76	12	111	32	21	23	22	1.98
30888104--30888134	13	2.4	13	88	0	53	48	0	9	41	1.36
30888161--30888228	23	3.0	23	93	0	118	48	2	16	32	1.61
30889279--30889329	26	2.0	26	88	3	77	25	3	5	64	1.33
30889967--30890035	35	2.0	35	97	0	129	46	13	4	36	1.62
30896277--30896338	22	2.7	23	76	11	58	22	24	19	33	1.97
30903422--30903508	23	3.8	23	79	11	90	18	21	21	37	1.94
30911660--30911731	34	2.1	34	100	0	144	27	8	22	41	1.82
30913844--30913900	25	2.3	24	85	8	78	38	21	21	19	1.93
30913876--30913999	64	1.9	64	85	3	169	35	22	20	20	1.96
30919122--30919179	17	3.6	17	84	9	77	60	0	0	39	0.97
30919120--30919167	12	3.9	12	78	13	53	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30919798--30919838	18	2.3	18	87	8	57	60	31	4	2	1.30
30930218--30930252	17	2.1	17	89	5	54	68	0	0	31	0.90
30930452--30930501	16	3.1	16	80	5	64	50	0	2	48	1.12
30930650--30930706	16	3.5	15	84	15	69	49	0	0	50	1.00
30930648--30930712	19	3.6	18	74	17	62	47	0	0	52	1.00
30931371--30931405	5	7.0	5	93	0	52	74	0	0	25	0.82
30931628--30931662	16	2.2	16	89	0	52	37	0	2	60	1.12
30939734--30939792	22	2.7	22	82	10	75	44	0	30	25	1.55
30940825--30940887	30	2.1	30	88	5	92	28	0	50	20	1.48
30940946--30940982	9	4.1	9	85	0	56	32	10	13	43	1.79
30951465--30951515	19	2.5	20	84	12	61	29	13	21	35	1.92
30953604--30953696	27	3.4	26	86	4	123	43	8	22	25	1.82
30964086--30964120	18	1.9	18	94	0	61	8	11	8	71	1.31
30965091--30965220	19	6.7	19	91	3	215	36	10	14	37	1.81
30965091--30965220	59	2.2	57	90	5	215	36	10	14	37	1.81
30966692--30966884	96	2.0	98	94	2	345	27	10	24	36	1.88
30971358--30971409	14	3.7	14	89	5	70	88	9	0	1	0.59
30971358--30971409	22	2.4	21	90	6	86	88	9	0	1	0.59
30971358--30971409	1	52.0	1	76	0	50	88	9	0	1	0.59
30971361--30971404	8	5.8	8	89	10	74	88	11	0	0	0.51
30972774--30972959	44	4.2	44	66	10	137	27	22	26	24	2.00
30972663--30973066	132	3.1	132	95	0	709	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30973043--30973639	44	13.8	43	73	11	361	28	20	23	27	1.99
30973039--30973644	217	2.8	217	94	0	1052	28	20	23	27	1.99
30973168--30973491	173	1.9	172	82	8	408	27	20	23	28	1.99
30973810--30973903	19	4.8	19	92	5	161	37	11	15	35	1.85
30973810--30973910	40	2.7	38	89	8	161	37	10	15	35	1.83
30974097--30974228	19	6.8	19	91	3	219	37	10	15	36	1.82
30974097--30974235	59	2.4	57	89	6	219	38	10	15	36	1.81
30973654--30974190	287	1.9	287	98	0	1038	32	16	18	32	1.93
30974978--30975027	25	2.0	26	88	4	75	32	8	4	56	1.47
30975697--30975891	98	2.0	98	94	0	345	28	10	24	36	1.89
30979290--30979337	20	2.4	20	86	6	62	47	0	0	52	1.00
30979585--30979628	21	2.0	21	82	8	52	11	20	4	63	1.44
30980248--30980295	18	2.7	17	75	9	51	62	4	6	27	1.38
30980831--30980863	14	2.4	14	100	0	66	45	24	6	24	1.75
30982224--30982293	24	2.9	24	82	4	88	47	7	5	40	1.55
30982232--30982300	24	2.9	23	82	4	75	47	7	4	40	1.51
30984578--30984691	24	4.9	24	86	8	146	50	7	3	37	1.49
30984603--30984671	21	3.1	21	84	11	93	49	8	5	36	1.58
30984584--30984691	45	2.3	45	84	7	137	50	8	3	37	1.50
30984636--30984679	14	3.4	14	76	23	60	52	9	0	38	1.33
30984891--30985043	49	3.1	49	82	3	191	35	18	13	32	1.90
30991311--30991502	85	2.2	86	83	2	244	32	17	19	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30991285--30991584	43	7.0	43	78	4	193	32	18	19	30	1.96
30991443--30991584	42	3.4	42	85	2	178	31	20	20	27	1.97
30994860--30994922	24	2.5	25	82	7	74	69	3	4	22	1.21
30994907--30994941	6	5.7	6	89	3	52	82	2	0	14	0.77
30995270--30995303	17	2.0	17	100	0	68	23	23	11	41	1.87
31002947--31002976	15	2.0	15	100	0	60	53	6	20	20	1.67
31006088--31006252	23	7.2	23	79	5	145	17	15	26	40	1.89
31014605--31014664	28	2.1	28	100	0	120	38	18	16	26	1.92
31017219--31017250	11	2.9	11	90	0	55	25	34	3	37	1.72
31019062--31019099	18	2.1	18	85	9	51	26	21	7	44	1.79
31019321--31019382	21	3.0	21	78	4	63	33	43	16	6	1.73
31019507--31019587	30	2.7	28	75	18	81	43	8	3	44	1.52
31022766--31023812	126	8.3	126	95	0	1779	26	22	18	32	1.97
31023830--31024064	96	2.4	96	87	2	319	42	17	3	37	1.66
31023830--31024098	96	2.8	96	84	3	308	43	17	3	35	1.65
31025522--31025552	16	1.9	16	93	0	53	19	6	16	58	1.59
31029030--31029171	68	2.1	68	98	0	275	38	7	17	35	1.79
31032791--31032859	4	17.2	4	72	21	56	71	2	24	1	1.09
31032789--31032865	22	3.5	21	82	10	84	71	2	24	1	1.06
31033683--31033821	37	3.5	40	75	6	140	28	17	21	32	1.96
31036260--31036289	7	4.3	7	95	0	51	53	13	0	33	1.40
31036315--31036430	58	2.0	58	94	0	205	34	17	11	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31038293--31038349	26	2.2	26	80	3	60	36	3	3	56	1.34
31040346--31040442	48	2.0	48	95	0	176	28	14	11	45	1.79
31050687--31050773	38	2.3	38	78	4	95	39	17	4	39	1.70
31056094--31056127	7	4.9	7	100	0	68	58	0	0	41	0.98
31056813--31056875	29	2.1	30	85	14	85	46	9	7	36	1.66
31057926--31057966	20	2.0	20	100	0	82	36	14	4	43	1.67
31061026--31061140	28	4.1	28	91	0	185	27	23	26	22	2.00
31061238--31061288	26	2.0	26	88	0	75	37	21	25	15	1.93
31062378--31062424	19	2.4	18	80	19	51	72	2	14	10	1.21
31064096--31064162	25	2.7	25	77	9	73	25	25	17	31	1.97
31064183--31064248	25	2.6	25	79	13	82	25	21	25	27	1.99
31066002--31066072	36	2.0	35	83	10	90	36	2	5	54	1.38
31066662--31066706	21	2.1	21	87	0	63	6	17	2	73	1.15
31067111--31067521	154	2.8	147	86	6	560	41	4	9	44	1.58
31067318--31067355	20	1.9	20	88	0	58	50	0	10	39	1.37
31068434--31068459	11	2.4	11	100	0	52	42	0	7	50	1.31
31069508--31069549	4	10.2	4	92	2	66	21	2	2	73	1.06
31080017--31080098	35	2.4	34	81	16	91	67	2	24	6	1.26
31080635--31080668	17	1.9	17	88	5	50	82	8	2	5	0.93
31081065--31081319	42	6.1	42	85	0	339	22	18	21	37	1.94
31081065--31081319	126	2.0	126	88	1	377	22	18	21	37	1.94
31082088--31082508	151	2.8	149	86	7	606	42	4	9	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31082390--31082492	53	1.9	53	82	9	129	44	0	11	42	1.47
31082464--31082541	31	2.4	33	87	4	115	41	7	3	47	1.50
31082328--31082697	178	2.1	180	96	1	681	42	4	8	44	1.55
31083258--31083294	10	3.7	10	86	13	58	18	2	0	78	0.87
31083262--31083314	20	2.7	20	85	5	63	20	5	1	71	1.16
31083836--31083963	40	3.2	39	81	3	139	41	17	20	21	1.90
31084002--31084360	41	8.8	39	82	7	299	20	19	29	31	1.97
31084020--31084360	123	2.8	119	82	8	355	19	19	29	31	1.96
31084736--31085397	279	2.4	267	81	10	708	29	2	24	42	1.69
31085407--31085441	18	1.9	18	88	0	52	31	0	25	42	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173