genome.fa.s17.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  97  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30407757--30407795	20	1.9	21	89	5	62	41	0	25	33	1.56
30410690--30410737	10	4.8	10	77	10	53	56	0	2	41	1.11
30437090--30437141	27	1.9	27	84	0	68	55	9	15	19	1.67
30437701--30437834	66	2.0	66	92	0	223	40	7	7	44	1.61
30438117--30438236	43	2.8	43	89	1	179	33	23	23	20	1.97
30438165--30438400	126	1.9	126	82	4	296	24	22	20	32	1.98
30438119--30438400	42	6.7	42	84	3	246	26	22	20	30	1.98
30438478--30438511	14	2.4	14	95	0	59	58	20	8	11	1.59
30438736--30438806	21	3.4	21	82	0	88	2	46	18	32	1.63
30444316--30444418	25	4.0	25	78	5	107	32	1	20	45	1.62
30444316--30444451	9	16.0	9	70	13	92	32	2	21	44	1.64
30444357--30444451	34	2.7	34	78	3	91	33	3	20	43	1.67
30444463--30444501	20	2.0	20	94	0	69	46	5	5	43	1.48
30444483--30444591	37	2.9	37	91	0	173	35	5	11	47	1.62
30444485--30444622	37	3.7	36	75	17	106	34	5	12	48	1.63
30445217--30445281	18	3.6	18	68	12	60	38	3	3	55	1.31
30446378--30446421	19	2.3	19	80	0	52	25	2	40	31	1.68
30446781--30447493	231	3.1	230	90	1	1140	33	19	17	28	1.95
30448552--30448600	18	2.5	21	80	9	59	26	2	10	61	1.39
30448936--30449188	113	2.3	113	80	6	266	32	22	23	21	1.98
30455833--30455878	18	2.5	19	80	20	53	47	21	4	26	1.69
30460756--30460846	29	3.1	28	85	3	110	37	13	24	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30465887--30466270	136	2.8	136	87	2	513	20	20	26	32	1.97
30483357--30483405	18	2.7	18	77	0	62	34	18	20	26	1.95
30483569--30483819	27	9.3	27	82	3	274	43	17	20	19	1.89
30483997--30484070	26	2.8	26	97	0	139	10	20	28	40	1.86
30484176--30484258	30	2.8	30	83	3	107	24	20	22	32	1.98
30492319--30492524	40	5.2	40	82	2	243	33	17	26	22	1.96
30492375--30492447	20	3.7	20	75	0	65	30	19	31	19	1.96
30492319--30492524	80	2.6	80	85	1	270	33	17	26	22	1.96
30495519--30495597	40	2.0	40	87	5	115	34	15	27	22	1.94
30497769--30498239	27	17.5	27	81	0	505	43	21	15	19	1.88
30500240--30500614	27	13.9	27	81	1	367	39	21	18	20	1.93
30500806--30500862	26	2.2	26	83	0	69	21	21	19	38	1.93
30500974--30501080	28	3.8	28	91	0	151	25	23	22	28	1.99
30502842--30502911	27	2.6	27	95	2	113	31	28	12	27	1.93
30502842--30502939	28	3.5	28	90	2	135	31	28	13	26	1.94
30510876--30510945	27	2.6	27	95	2	113	31	28	12	27	1.93
30510876--30510973	28	3.5	28	90	2	135	31	28	13	26	1.94
30514746--30514839	27	3.5	27	80	8	84	39	20	13	26	1.90
30524307--30524481	28	6.2	27	88	4	224	30	22	24	22	1.99
30524817--30524936	54	2.2	54	81	7	138	20	13	19	46	1.83
30524844--30524938	27	3.5	26	84	8	127	17	12	20	49	1.79
30528707--30528772	26	2.6	25	79	9	78	39	15	1	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30532574--30532772	26	7.7	26	78	2	175	38	26	15	20	1.92
30532588--30532762	78	2.2	78	83	2	217	41	26	12	20	1.87
30539521--30539626	41	2.5	42	86	6	135	25	24	4	45	1.73
30539520--30539626	43	2.5	42	82	8	121	25	25	4	44	1.73
30546705--30546928	79	2.8	80	85	6	287	25	28	22	24	1.99
30546705--30546928	40	5.7	40	84	7	278	25	28	22	24	1.99
30552828--30553490	43	15.3	43	68	14	171	28	19	23	29	1.98
30552958--30553592	88	7.4	83	66	11	278	28	19	22	29	1.98
30552867--30553580	173	4.2	172	89	2	1044	27	19	23	29	1.98
30553429--30553714	130	2.2	129	93	3	486	26	17	23	33	1.96
30553429--30553755	130	2.5	127	84	10	446	26	17	22	33	1.96
30555444--30555632	95	2.0	93	87	8	276	38	24	9	27	1.86
30556907--30556981	19	3.8	19	79	6	96	32	14	14	38	1.87
30557193--30558030	44	19.5	44	68	17	342	26	22	20	30	1.98
30557193--30557387	83	2.3	84	81	12	211	26	24	20	28	1.99
30557153--30558058	216	4.2	216	87	4	1260	26	22	20	30	1.98
30558020--30558372	132	2.7	130	82	6	416	25	22	20	32	1.98
30558279--30558456	87	2.1	86	91	3	286	24	22	22	30	1.99
30558366--30558605	129	1.9	130	90	4	387	25	23	20	30	1.98
30563855--30564043	95	2.0	97	87	8	280	38	23	10	28	1.87
30565344--30565434	18	4.7	19	72	14	78	37	17	8	36	1.81
30571538--30571760	40	5.6	40	83	7	267	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30571538--30571760	79	2.8	79	84	6	272	25	28	21	24	1.99
30577701--30577854	44	3.5	43	75	15	143	26	17	25	30	1.97
30577740--30578455	172	4.2	172	90	1	1078	27	19	23	30	1.98
30578301--30578516	45	4.9	44	70	12	113	28	17	22	31	1.96
30578303--30578589	130	2.2	129	94	2	495	26	17	22	33	1.96
30577740--30578552	344	2.4	344	85	3	1019	27	18	23	30	1.98
30578303--30578630	130	2.5	127	85	8	453	26	17	22	32	1.96
30580362--30580558	98	2.0	98	94	0	349	37	25	9	27	1.87
30581856--30581930	19	3.8	19	79	6	96	32	14	14	38	1.87
30582145--30582991	44	19.5	43	69	14	388	26	22	20	30	1.98
30582145--30582774	84	7.3	86	69	16	231	26	22	20	30	1.98
30582145--30583018	217	4.0	218	92	1	1398	26	22	20	30	1.98
30583006--30583339	132	2.5	132	90	0	508	25	23	18	31	1.98
30583245--30583425	88	2.1	88	94	0	317	24	23	22	30	1.99
30583119--30583559	220	2.0	220	93	0	749	24	24	20	31	1.98
30583270--30583408	44	3.2	44	66	15	115	23	24	18	33	1.97
30583316--30583577	132	2.0	133	90	0	384	25	24	19	30	1.98
30588926--30589122	98	2.0	98	94	0	349	37	25	9	27	1.87
30590426--30590538	19	5.8	19	83	4	154	35	15	9	38	1.81
30590426--30590537	40	2.8	39	91	2	172	35	15	9	39	1.80
30595022--30595048	3	9.0	3	100	0	54	33	0	0	66	0.92
30595520--30595559	19	2.2	18	86	8	55	45	10	15	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30596357--30596539	24	7.9	23	70	18	112	32	6	6	54	1.51
30596638--30596682	23	2.0	23	86	0	63	33	6	4	55	1.46
30603120--30603703	45	13.0	45	80	7	616	29	18	23	28	1.98
30603210--30603703	178	2.8	180	87	1	724	30	18	22	28	1.97
30603029--30603518	268	1.8	268	93	0	845	30	18	22	28	1.97
30603036--30603703	268	2.5	267	84	4	810	30	18	23	28	1.97
30603029--30603703	135	5.0	135	78	8	662	30	18	22	28	1.97
30603694--30604245	132	4.2	132	88	1	741	30	19	25	25	1.98
30603708--30604245	264	2.0	264	89	1	837	30	19	24	25	1.98
30604326--30604504	44	4.0	43	75	13	132	28	15	24	31	1.96
30605767--30605952	24	8.0	24	72	13	138	32	6	5	55	1.50
30605766--30605927	47	3.5	46	73	15	129	32	5	4	56	1.44
30605726--30605977	70	3.6	68	75	14	212	34	5	5	53	1.48
30606052--30606095	23	1.9	23	85	0	61	34	6	6	52	1.55
30607164--30607534	126	3.0	125	87	0	526	29	14	22	32	1.94
30610560--30610784	116	1.9	116	88	1	335	41	9	10	38	1.73
30610795--30610844	23	2.2	23	85	0	64	30	0	24	46	1.53
30610812--30611007	29	6.6	30	79	14	219	27	0	26	45	1.58
30610812--30611007	62	3.3	58	79	14	222	27	0	26	45	1.58
30610854--30611003	38	3.7	38	73	17	138	28	0	26	46	1.53
30610790--30611011	87	2.6	88	89	2	326	27	0	26	45	1.57
30610892--30610965	24	3.0	23	79	11	76	28	0	27	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30610992--30611033	13	3.2	13	86	6	59	26	0	21	52	1.47
30610843--30611040	87	2.3	87	91	4	310	27	0	25	46	1.56
30610983--30611199	73	3.0	72	91	3	355	24	0	29	45	1.57
30611065--30611106	13	3.2	13	93	0	66	23	0	21	54	1.44
30611112--30611145	6	5.7	6	92	0	59	17	0	47	35	1.48
30611111--30611145	18	1.9	18	100	0	70	20	0	45	34	1.51
30611138--30611226	13	6.8	13	69	15	67	24	0	24	50	1.49
30611129--30611556	54	7.7	55	73	13	326	24	0	29	46	1.55
30610992--30611226	73	3.3	69	86	9	298	24	0	27	47	1.55
30611255--30611345	48	2.0	45	100	0	155	25	0	28	46	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173