genome.fa.s17.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  109  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33868273--33868343	19	3.7	19	82	0	70	16	25	29	28	1.97
33869554--33869594	2	20.5	2	85	9	57	51	2	0	46	1.14
33871149--33871263	10	10.9	11	67	22	52	41	0	2	55	1.13
33871159--33871209	26	1.9	28	84	11	72	45	0	3	50	1.20
33871150--33871263	19	5.5	20	74	14	79	41	0	2	56	1.13
33871189--33871246	28	2.1	28	84	9	75	44	0	3	51	1.18
33872718--33872797	27	3.0	27	88	0	106	18	25	35	21	1.96
33872893--33872932	16	2.5	16	95	0	71	70	5	25	0	1.08
33875904--33876115	71	2.9	73	85	11	272	55	8	8	27	1.60
33878394--33878755	103	3.5	104	92	3	583	54	15	0	29	1.45
33878989--33879107	60	2.0	60	94	0	211	53	11	0	34	1.37
33879470--33879539	27	2.6	27	90	0	104	17	32	27	22	1.96
33879895--33879975	31	2.6	31	84	5	101	51	0	3	44	1.19
33879895--33879967	32	2.3	32	86	4	96	50	0	4	45	1.20
33888511--33888597	39	2.2	40	95	2	158	65	0	2	32	1.05
33891635--33891673	17	2.2	18	90	4	62	46	0	0	53	1.00
33891690--33891735	20	2.2	21	80	7	58	41	0	8	50	1.33
33895856--33896016	83	1.9	83	82	6	198	41	14	8	35	1.76
33921951--33922962	89	11.5	89	90	2	1510	26	23	19	30	1.98
33924219--33924267	13	3.6	14	81	13	57	14	20	2	63	1.40
33924229--33924271	7	6.1	7	84	10	52	13	18	2	65	1.38
33924229--33924270	15	2.9	15	82	13	52	14	19	2	64	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33925197--33925237	20	2.0	20	90	0	64	68	7	12	12	1.39
33933081--33933331	99	2.5	101	90	4	398	17	19	31	31	1.96
33935580--33935616	15	2.6	15	87	8	51	51	0	0	48	1.00
33935695--33935729	18	2.0	17	88	5	52	54	0	0	45	0.99
33935721--33935750	16	1.9	15	93	6	51	50	10	0	40	1.36
33935578--33935767	104	1.8	104	95	0	344	48	5	2	43	1.37
33935582--33935806	104	2.2	104	85	5	296	49	5	2	43	1.37
33935810--33936056	89	2.7	91	91	2	417	47	3	3	45	1.36
33936021--33936059	17	2.5	15	84	12	51	58	0	0	41	0.98
33948220--33948296	38	2.0	38	97	0	145	18	14	36	31	1.90
33950111--33950174	7	8.6	7	73	21	51	43	1	1	53	1.19
33950111--33950172	27	2.3	27	75	24	69	43	1	1	53	1.20
33950119--33950187	32	2.2	32	79	7	79	47	1	2	47	1.25
33950885--33950931	24	2.0	24	84	16	62	31	0	17	51	1.46
33951089--33951226	40	3.5	40	73	10	106	27	15	23	34	1.94
33953437--33953491	28	2.0	26	86	13	76	34	1	0	63	1.05
33957413--33957454	21	2.0	21	95	0	75	26	26	23	23	2.00
33960357--33960398	21	2.0	21	95	0	75	11	23	19	45	1.83
33962537--33962616	32	2.5	32	78	8	90	53	17	2	26	1.56
33962724--33962817	45	2.1	45	93	0	161	24	23	11	40	1.88
33964088--33964131	21	2.1	21	87	8	63	47	11	6	34	1.66
33965481--33965534	28	1.9	28	92	0	90	40	9	33	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33972490--33972548	31	1.9	31	82	0	73	33	10	13	42	1.78
33991239--33991318	39	2.1	39	97	0	151	38	7	16	37	1.77
33991411--33991493	20	4.2	20	78	7	82	59	3	1	36	1.23
33991412--33991496	39	2.2	37	79	8	98	56	4	1	37	1.28
33991515--33991549	10	3.4	10	88	4	52	65	8	0	25	1.21
33992452--33992520	27	2.5	28	74	6	79	23	34	33	8	1.85
33992562--33992706	34	4.2	33	77	14	118	66	0	33	0	0.97
33992592--33992684	20	4.9	20	78	13	108	65	0	33	1	1.00
33992577--33992706	15	9.3	14	68	20	58	67	0	31	0	0.96
33992614--33992676	25	2.5	24	78	17	65	68	0	30	1	0.99
33992582--33992706	34	3.6	34	80	8	146	68	0	31	0	0.96
33992584--33992697	55	2.1	54	82	9	144	66	0	32	0	0.98
33992591--33992708	10	11.0	10	68	17	60	68	0	30	0	0.95
33993041--33994105	305	3.5	304	88	3	1536	52	7	10	30	1.62
33993515--33993571	26	2.2	25	84	12	71	63	8	0	28	1.24
33999139--33999349	39	5.4	39	72	16	141	50	11	4	33	1.59
33999211--33999257	23	2.0	23	84	8	60	59	14	2	23	1.46
33999446--33999495	24	2.0	26	84	7	68	72	10	2	16	1.21
34000065--34000124	31	1.9	31	86	6	86	26	8	5	60	1.47
34000657--34000692	17	2.1	17	89	0	54	55	0	0	44	0.99
34001348--34001395	23	2.0	24	84	4	62	66	4	2	27	1.21
34002403--34002498	44	2.2	44	79	7	113	35	15	22	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34004594--34004635	21	2.0	21	86	9	59	33	4	2	59	1.31
34006185--34006227	21	2.0	21	95	0	77	30	23	11	34	1.90
34006308--34006370	25	2.5	25	78	0	72	28	25	19	26	1.98
34008268--34008363	21	4.6	21	71	17	56	44	16	19	18	1.87
34016372--34016530	73	2.2	73	100	0	318	25	29	28	16	1.97
34017386--34017415	16	1.9	16	93	6	53	50	20	0	30	1.49
34018542--34018611	27	2.6	27	76	0	77	27	22	25	24	2.00
34019583--34019621	20	1.9	21	89	5	62	25	10	0	64	1.25
34019590--34019630	15	2.6	16	82	14	50	31	4	0	63	1.15
34022938--34023121	101	1.8	102	88	5	284	24	18	26	30	1.98
34022930--34023120	51	3.8	51	75	8	187	24	17	27	30	1.97
34023325--34023397	37	1.9	38	86	2	103	42	2	23	31	1.68
34026112--34026143	16	2.0	16	93	0	55	25	15	0	59	1.36
34026371--34026510	50	2.8	51	84	6	194	30	28	17	23	1.97
34031538--34031914	125	3.0	125	92	0	621	29	16	23	30	1.96
34035092--34035781	21	31.3	21	75	14	472	26	0	25	47	1.55
34035092--34035781	22	31.3	22	76	12	591	26	0	25	47	1.55
34035210--34035241	13	2.5	13	94	0	55	18	0	43	37	1.51
34035092--34035781	108	6.3	107	75	14	369	26	0	25	47	1.55
34037934--34038010	11	6.9	11	75	19	79	45	1	28	24	1.61
34037934--34038009	33	2.3	35	80	13	88	44	1	28	25	1.62
34038203--34038302	42	2.4	42	91	0	164	13	35	33	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34045568--34045755	50	3.6	50	79	4	178	27	22	27	23	1.99
34050455--34050600	59	2.4	59	80	5	150	23	19	15	41	1.90
34050498--34050611	59	1.9	60	87	5	169	22	20	16	40	1.91
34055026--34055094	3	24.0	3	79	8	54	56	0	8	34	1.30
34055034--34055084	15	3.5	15	84	10	70	52	0	11	35	1.38
34056432--34056496	33	1.9	34	96	3	123	20	12	49	18	1.79
34057068--34057646	45	12.4	45	61	18	128	29	22	18	29	1.98
34057066--34057258	95	2.0	94	96	1	359	27	22	19	29	1.98
34056980--34057487	227	2.2	228	89	4	776	28	23	19	28	1.98
34057293--34057680	97	4.0	96	92	2	627	29	22	18	30	1.97
34057293--34057680	192	2.0	192	94	1	688	29	22	18	30	1.97
34057702--34057838	41	3.2	43	66	19	113	28	23	24	24	2.00
34057671--34057847	86	2.0	87	92	1	293	25	23	23	27	2.00
34061959--34062002	19	2.3	20	84	7	56	40	11	20	27	1.86
34064214--34064282	3	24.0	3	79	8	54	56	0	8	34	1.30
34064222--34064272	15	3.5	15	84	10	70	52	0	11	35	1.38
34065627--34065695	35	2.0	35	97	0	129	21	11	49	17	1.78
34067329--34067363	17	2.1	17	94	0	61	42	0	2	54	1.15
34080933--34080983	21	2.4	22	83	6	68	41	3	33	21	1.72
34081439--34081473	18	1.9	18	94	0	61	20	11	8	60	1.57
34086815--34086868	5	10.4	5	84	7	72	42	0	24	33	1.55
34089325--34089371	25	1.9	24	82	4	58	38	0	34	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34091902--34091960	26	2.3	26	90	0	91	35	10	15	38	1.81
34098704--34098748	23	1.9	24	86	4	65	20	2	51	26	1.59
34101942--34101978	20	1.9	18	89	10	56	54	10	0	35	1.36
34104468--34104511	5	8.8	5	89	0	61	38	0	20	40	1.53
34104986--34105035	24	2.1	24	81	7	57	12	26	20	42	1.86
34104985--34105041	18	3.2	18	71	0	51	10	26	17	45	1.81
34107179--34107351	88	2.0	88	94	0	301	42	7	6	43	1.58
34108646--34108693	24	2.0	24	84	8	62	35	6	47	10	1.63
34112059--34112088	16	1.9	15	93	6	51	63	20	3	13	1.43
34120417--34120450	15	2.1	17	89	10	54	5	8	5	79	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173