genome.fa.s17.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  127  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38839844--38839891	15	3.3	15	83	11	57	43	0	2	54	1.12
38839959--38840010	15	3.6	15	80	12	56	44	0	1	53	1.11
38839714--38840126	120	3.4	120	93	3	708	42	2	5	49	1.40
38840088--38840129	15	2.7	16	82	14	52	45	0	2	52	1.13
38840079--38840120	15	2.9	15	82	10	52	47	0	0	52	1.00
38840063--38840379	157	2.0	157	96	0	589	47	4	3	44	1.40
38840232--38840266	18	2.0	17	88	5	52	45	0	0	54	0.99
38840064--38840302	75	3.1	75	64	18	191	46	3	3	46	1.35
38848663--38848728	26	2.6	25	78	9	71	66	3	4	25	1.25
38851325--38851393	30	2.3	30	80	10	77	46	14	23	15	1.83
38855206--38855251	21	2.2	21	84	7	58	26	2	21	50	1.60
38857503--38857720	40	5.4	40	94	0	364	30	20	21	27	1.98
38868096--38868248	45	3.4	45	85	4	157	26	22	21	29	1.99
38868125--38868251	45	2.8	46	90	2	170	24	26	22	26	2.00
38868168--38868418	45	5.8	44	76	9	149	28	26	19	25	1.99
38868170--38868421	130	1.9	131	86	2	355	28	26	19	25	1.99
38868514--38868720	100	2.1	100	81	7	233	25	20	20	32	1.97
38868864--38869039	50	3.5	50	70	6	140	25	21	21	32	1.98
38868801--38869092	100	2.9	100	82	2	345	25	22	21	30	1.99
38868514--38869353	367	2.3	367	88	0	1214	26	23	19	29	1.99
38869180--38869358	50	3.6	49	74	6	162	26	22	20	30	1.99
38868961--38869526	267	2.1	267	89	0	853	26	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38869602--38869722	45	2.8	44	72	3	127	27	26	18	28	1.98
38869558--38869722	88	1.9	88	85	0	231	24	26	21	27	1.99
38891136--38891184	16	2.9	16	78	6	53	59	2	0	38	1.09
38893697--38893734	14	2.7	14	84	12	51	52	0	0	47	1.00
38893743--38893792	16	3.2	16	70	18	52	52	0	0	48	1.00
38894866--38894959	41	2.3	41	94	1	161	51	15	8	24	1.72
38898122--38898189	34	2.0	34	94	0	118	38	10	30	20	1.86
38899660--38899700	21	1.9	22	95	5	75	58	14	9	17	1.62
38899825--38899859	17	2.1	17	100	0	70	37	11	17	34	1.85
38903880--38903923	23	1.9	23	100	0	88	31	9	4	54	1.52
38906397--38906434	20	1.9	20	88	0	58	47	7	5	39	1.55
38906397--38906440	21	2.2	20	83	4	52	45	6	6	40	1.57
38909883--38909974	31	2.8	34	79	12	95	30	14	10	44	1.79
38914855--38915038	26	7.1	26	73	6	149	22	16	26	34	1.95
38914868--38914994	51	2.5	52	83	3	159	22	15	25	37	1.93
38914868--38915038	77	2.2	78	82	4	202	22	15	25	35	1.94
38933703--38933739	17	2.2	17	90	0	56	72	5	0	21	1.04
38935510--38935567	6	9.5	6	94	1	62	0	58	0	41	0.98
38935512--38935567	12	4.6	12	90	2	76	0	58	0	41	0.98
38935510--38935551	19	2.2	19	86	0	57	0	61	0	38	0.96
38935519--38935567	18	2.7	18	90	0	80	0	57	0	42	0.99
38937468--38937529	29	2.1	29	81	0	79	25	14	16	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38939388--38939427	20	2.0	20	95	0	71	45	12	10	32	1.75
38939378--38939442	34	1.9	33	82	14	80	44	9	9	36	1.68
38948291--38948455	69	2.4	69	84	6	226	34	18	24	23	1.96
38952615--38952721	53	2.0	53	96	0	196	27	24	17	30	1.97
38953778--38953833	28	2.0	28	96	0	103	33	21	12	32	1.91
38958386--38958411	13	2.0	13	100	0	52	69	0	15	15	1.20
38967638--38967688	25	2.0	25	85	7	68	21	17	21	39	1.93
38971358--38971382	8	3.1	8	100	0	50	12	12	0	76	1.04
38975083--38975176	44	2.1	44	88	0	134	31	22	20	25	1.98
38975008--38975277	142	1.9	142	90	1	434	34	17	19	28	1.95
38979964--38980005	21	2.0	20	82	13	50	45	14	16	23	1.84
38984332--38984380	22	2.3	22	82	10	57	38	0	2	59	1.09
38984663--38984739	38	2.0	38	100	0	154	12	35	12	38	1.82
38990134--38990678	272	2.0	272	98	0	1063	25	17	19	37	1.94
38995835--38995930	48	2.0	48	97	0	183	43	17	8	30	1.78
39005793--39005858	22	2.9	22	69	18	55	46	0	1	51	1.10
39005815--39005864	18	2.6	19	77	22	52	46	0	2	52	1.12
39005885--39005915	15	2.0	16	93	6	55	61	0	0	38	0.96
39006049--39006112	31	2.1	31	85	2	85	31	14	3	51	1.57
39012141--39012180	20	2.0	20	95	4	73	40	5	0	55	1.22
39012138--39012186	19	2.6	18	87	9	71	42	6	2	48	1.39
39019580--39019776	32	6.3	32	78	6	197	39	17	18	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39019621--39019710	29	3.0	30	75	8	94	35	17	21	25	1.95
39019591--39019747	61	2.5	60	80	7	179	37	17	19	25	1.93
39019592--39019774	93	2.0	93	82	2	224	38	17	19	25	1.93
39019785--39019836	26	2.0	26	84	0	68	40	21	23	15	1.91
39019951--39020060	24	4.6	24	80	0	103	43	21	9	25	1.82
39020078--39020430	27	13.5	27	73	9	221	23	20	18	36	1.95
39020152--39020184	16	2.1	16	94	0	57	24	18	12	45	1.83
39020098--39020228	70	1.9	70	85	0	181	25	19	17	37	1.94
39020078--39020265	97	1.9	97	82	4	236	26	19	17	36	1.94
39020168--39020375	81	2.6	81	83	1	247	22	22	20	34	1.97
39020308--39020480	81	2.1	81	80	2	195	20	19	20	39	1.92
39020365--39020470	54	2.0	54	87	7	153	19	20	17	41	1.90
39020367--39020480	27	4.2	27	82	12	135	21	18	17	42	1.90
39027249--39027299	25	2.0	25	92	7	86	23	9	19	47	1.79
39027300--39027387	25	3.5	25	75	9	72	26	14	22	36	1.93
39035227--39035265	20	2.0	20	90	5	62	41	7	0	51	1.31
39036926--39036972	24	1.9	25	82	4	60	38	12	8	40	1.74
39037080--39037197	62	2.0	62	83	5	152	51	6	5	36	1.50
39037176--39037236	20	3.3	19	74	17	56	55	3	1	39	1.26
39041825--39041862	15	2.5	15	95	0	67	21	0	5	73	1.02
39041864--39041889	13	2.0	13	100	0	52	53	0	0	46	1.00
39041870--39041901	15	2.1	15	94	0	55	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39041897--39041923	11	2.5	11	100	0	54	48	0	0	51	1.00
39045882--39045937	10	5.8	10	75	12	55	67	0	3	28	1.07
39046147--39046204	26	2.2	26	84	6	71	32	3	3	60	1.30
39046223--39046264	19	2.2	20	80	16	54	40	0	0	59	0.97
39046772--39046819	21	2.3	21	85	0	60	47	4	18	29	1.67
39046785--39046826	21	2.0	21	85	0	57	50	4	14	30	1.63
39050481--39050519	18	2.2	18	86	9	53	41	23	10	25	1.86
39054467--39054988	263	2.0	261	90	1	830	31	23	16	28	1.96
39070462--39070649	97	1.9	97	95	0	340	31	16	18	32	1.93
39070621--39070844	41	5.5	41	93	0	358	29	23	22	25	1.99
39070622--39070876	123	2.1	123	84	1	332	29	22	22	25	1.99
39070634--39070889	82	3.1	82	88	1	271	28	22	23	25	1.99
39078862--39079048	41	4.6	41	89	0	275	27	21	23	26	1.99
39079013--39079101	41	2.2	41	79	0	97	30	17	24	26	1.98
39078862--39079089	123	1.9	123	80	3	271	28	21	23	26	1.99
39083881--39084013	37	3.6	37	76	8	144	31	14	19	34	1.92
39083883--39084040	74	2.1	74	91	0	253	32	12	18	36	1.89
39091795--39091833	19	2.1	19	85	9	53	33	7	10	48	1.66
39098623--39098651	6	5.0	6	91	8	51	0	31	0	68	0.89
39104961--39104993	17	1.9	17	93	0	57	57	9	12	21	1.62
39105419--39105457	18	2.2	18	85	0	51	20	35	5	38	1.75
39116842--39116895	27	2.0	28	81	3	65	37	14	29	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39117543--39117581	18	2.1	18	85	9	51	33	5	5	56	1.43
39124821--39124962	70	2.0	70	94	0	248	35	18	18	28	1.94
39126531--39126573	19	2.3	19	84	8	52	18	6	2	72	1.19
39126565--39126602	11	3.3	11	86	13	58	31	2	0	65	1.06
39126528--39126602	6	12.3	6	82	10	64	24	5	1	69	1.17
39126562--39126600	13	3.2	13	85	14	64	33	5	0	61	1.18
39129694--39129859	50	3.3	50	85	0	224	25	24	28	21	1.99
39130129--39130167	12	3.2	12	85	0	51	51	5	23	20	1.67
39137246--39137360	25	4.6	25	84	2	135	36	21	16	25	1.94
39137246--39137377	25	5.3	25	82	3	133	36	19	17	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173