genome.fa.s17.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  119  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36757759--36758092	43	7.8	42	76	12	224	27	30	17	23	1.97
36757780--36758092	85	3.7	83	79	11	296	29	30	17	22	1.97
36757780--36758092	128	2.4	128	86	2	405	29	30	17	22	1.97
36758446--36758508	21	3.0	21	85	0	81	4	44	17	33	1.70
36758472--36758516	21	2.1	21	91	0	72	2	42	17	37	1.62
36758487--36758652	66	2.5	66	85	3	210	13	26	19	40	1.88
36761257--36761300	16	2.8	16	85	0	61	36	0	15	47	1.46
36761268--36761386	25	4.6	25	73	13	114	36	0	17	44	1.55
36761270--36761373	55	1.9	55	84	4	138	36	0	18	44	1.56
36761325--36761439	9	13.7	9	70	17	77	38	0	17	43	1.55
36761327--36761439	16	6.8	16	69	16	70	38	0	17	43	1.56
36761327--36761445	34	3.6	34	67	18	88	38	0	16	43	1.54
36761419--36761883	31	15.5	31	79	11	404	39	2	11	47	1.52
36761615--36761659	22	2.0	22	95	0	81	42	0	11	46	1.39
36761535--36761881	56	6.0	56	86	7	426	39	2	10	46	1.52
36761727--36761834	22	5.1	21	72	17	66	38	1	12	47	1.52
36761460--36761881	174	2.4	176	87	5	588	39	2	10	47	1.52
36764721--36764789	35	2.0	36	86	11	99	37	0	7	55	1.28
36764869--36765210	169	2.0	168	94	1	605	41	30	2	25	1.67
36766503--36766540	15	2.5	15	83	8	51	36	39	0	23	1.55
36767017--36767333	41	7.8	41	86	3	397	33	26	25	14	1.94
36767390--36767488	40	2.5	40	80	6	112	20	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36769991--36770044	19	2.8	19	94	0	99	37	9	16	37	1.81
36769980--36770051	38	2.0	36	84	10	94	37	9	16	36	1.82
36769991--36770067	38	1.9	40	87	10	113	36	7	16	38	1.78
36775608--36775672	5	13.2	5	78	15	55	36	0	4	58	1.19
36779686--36779750	5	13.2	5	78	15	64	41	0	1	56	1.08
36779994--36780024	16	2.0	15	93	6	53	70	0	29	0	0.87
36780628--36780674	24	2.0	23	84	12	60	51	4	14	29	1.62
36780953--36780997	23	2.0	23	86	0	63	13	4	37	44	1.64
36782231--36782263	14	2.3	15	89	5	50	27	12	33	27	1.92
36783591--36783789	88	2.3	88	89	1	301	28	26	23	21	1.99
36783639--36783940	160	1.9	160	87	2	444	25	25	23	25	2.00
36783890--36784032	44	3.2	44	66	7	119	23	26	25	23	2.00
36783798--36784153	88	4.0	88	86	2	464	27	27	23	21	1.99
36784157--36784273	44	2.7	43	82	6	137	29	17	24	28	1.98
36784637--36784965	44	7.5	44	71	11	212	29	19	21	28	1.98
36784621--36785061	217	2.0	218	89	0	686	29	19	23	27	1.98
36785600--36785700	19	5.4	19	89	2	89	35	8	15	39	1.79
36785611--36785702	19	4.8	19	93	0	157	35	7	17	39	1.78
36785877--36785921	23	2.0	23	81	0	54	22	0	15	62	1.33
36792030--36792106	39	2.0	39	94	0	136	35	27	16	20	1.95
36795588--36795724	41	3.4	40	82	5	141	42	17	24	16	1.88
36798121--36798251	39	3.3	38	74	13	122	32	18	25	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36798138--36798252	39	2.9	39	84	2	151	33	18	23	24	1.96
36798310--36798404	41	2.3	41	74	1	93	24	17	26	31	1.97
36798808--36799004	14	13.9	14	71	13	116	19	1	31	47	1.59
36798808--36798997	7	26.7	7	70	14	61	19	1	31	47	1.59
36798926--36798996	29	2.4	31	81	9	78	16	0	35	47	1.47
36799055--36799094	7	5.7	7	81	0	53	17	0	35	47	1.48
36799050--36799094	14	3.2	14	90	0	72	20	0	31	48	1.49
36803518--36803660	43	3.3	43	87	2	173	20	16	31	30	1.95
36803479--36803647	86	2.0	84	80	4	187	25	16	28	28	1.97
36803895--36803961	35	1.9	35	93	0	116	46	10	5	37	1.63
36803972--36804140	56	3.1	58	77	18	159	45	15	2	36	1.60
36804038--36804121	9	9.6	9	84	7	93	48	17	0	33	1.48
36803982--36804121	65	2.2	61	88	7	201	46	16	1	35	1.56
36804047--36804146	43	2.3	42	88	6	139	50	15	0	35	1.44
36804108--36804172	25	2.7	25	83	6	73	55	7	3	33	1.44
36809681--36809809	66	2.0	65	83	6	161	42	17	26	13	1.86
36810108--36810204	43	2.3	43	85	3	124	27	22	24	24	2.00
36810147--36810314	43	3.9	43	76	7	146	24	17	29	29	1.97
36818840--36818877	16	2.2	18	86	9	53	28	21	0	50	1.49
36820114--36820152	20	2.0	20	100	0	78	41	12	10	35	1.77
36823521--36823559	19	2.1	19	85	9	53	35	12	10	41	1.77
36827459--36827500	20	2.1	20	100	0	84	54	19	14	11	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36829242--36829277	18	1.9	19	94	5	65	75	11	5	8	1.19
36831392--36831760	92	4.0	92	81	3	413	35	25	14	24	1.93
36831400--36831748	184	1.9	183	85	2	486	34	25	14	25	1.94
36836586--36836644	16	3.6	16	73	20	50	8	11	1	77	1.05
36836577--36836619	21	2.0	21	82	8	52	9	11	0	79	0.95
36836580--36836644	6	10.8	6	82	9	62	7	12	1	78	1.02
36839994--36840033	12	3.1	12	86	13	53	10	12	0	77	0.99
36844469--36844774	92	3.3	91	82	2	389	33	26	14	25	1.94
36860496--36860541	20	2.1	23	84	11	62	63	2	4	30	1.26
36864789--36864845	17	3.4	17	95	0	96	19	36	21	22	1.95
36865305--36865355	25	2.0	25	84	3	66	13	27	35	23	1.93
36867676--36867724	20	2.5	19	80	9	53	51	2	8	38	1.43
36869491--36869634	25	5.9	25	73	5	98	31	22	26	19	1.97
36869591--36869636	24	1.9	24	86	0	65	30	28	28	13	1.94
36870183--36870221	5	7.6	5	82	5	51	41	17	0	41	1.50
36877988--36878043	4	14.0	4	78	14	62	75	3	0	21	0.96
36877988--36878043	22	2.5	22	88	5	78	75	3	0	21	0.96
36877983--36878038	18	3.2	18	82	10	71	76	3	0	19	0.93
36878497--36878536	19	2.2	19	90	4	64	77	5	0	17	0.94
36878005--36878978	493	2.0	493	94	1	1727	37	19	12	30	1.89
36884153--36884207	24	2.3	24	81	6	67	34	9	20	36	1.84
36884222--36884273	24	2.2	24	100	0	104	25	3	19	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36884349--36884413	27	2.4	27	85	14	91	18	24	24	32	1.97
36884367--36884419	27	2.0	27	85	7	72	22	24	22	30	1.99
36888462--36888528	27	2.5	27	90	0	107	37	19	19	23	1.94
36911119--36911298	39	4.6	39	85	0	216	30	3	21	44	1.68
36912019--36912113	42	2.3	42	90	0	154	30	15	18	34	1.93
36912046--36912114	20	3.3	20	69	15	59	28	14	18	37	1.91
36913931--36913971	15	2.8	15	82	10	50	51	17	17	14	1.77
36914240--36914386	73	2.0	73	93	2	251	37	23	13	25	1.92
36915461--36915500	20	2.0	20	85	9	55	47	15	0	37	1.45
36924232--36924256	11	2.3	11	100	0	50	72	0	0	28	0.86
36924395--36924432	18	2.1	19	85	14	53	36	2	23	36	1.69
36928681--36928719	15	2.6	15	83	0	51	51	0	2	46	1.14
36932637--36932673	18	2.1	18	100	0	74	45	0	10	43	1.39
36934388--36934441	3	18.3	3	81	11	58	66	1	3	27	1.19
36934751--36934841	3	29.0	3	77	16	71	69	2	2	26	1.12
36943468--36943517	26	1.9	27	88	8	77	64	10	10	16	1.50
36957970--36958043	27	2.7	27	87	0	94	33	12	24	29	1.91
36961211--36961241	16	1.9	16	100	0	62	38	0	9	51	1.35
36961209--36961242	10	3.4	10	87	0	50	41	0	8	50	1.34
36961352--36961439	44	2.0	44	86	0	122	38	30	14	15	1.88
36962580--36962621	22	1.9	22	85	9	59	30	2	0	66	1.04
36974405--36974604	45	4.5	44	77	2	175	29	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36974900--36974997	44	2.2	45	88	1	144	30	15	27	26	1.96
36976017--36976049	7	4.7	7	89	10	50	9	0	0	90	0.44
36976017--36976050	8	4.5	8	89	10	54	8	0	0	91	0.43
36976017--36976051	15	2.4	14	90	9	61	8	0	0	91	0.42
36976631--36976672	22	1.9	22	85	9	59	30	2	0	66	1.04
36976705--36976875	93	1.8	93	88	5	265	38	14	4	43	1.66
36977873--36978013	75	1.9	75	80	5	169	32	5	17	44	1.72
36978108--36978201	41	2.3	41	79	0	98	28	17	23	30	1.97
36978326--36978480	69	2.2	72	84	7	194	32	10	14	42	1.80
36979926--36979950	12	2.1	12	100	0	50	24	36	24	16	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173