genome.fa.s17.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  128  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39139356--39139399	19	2.4	19	84	3	63	40	0	0	59	0.98
39139359--39139398	18	2.2	18	86	8	55	40	0	0	60	0.97
39140836--39140865	15	2.0	15	93	0	51	30	26	13	30	1.94
39140857--39140956	34	2.9	34	84	0	128	31	21	24	24	1.98
39144534--39144803	43	6.3	43	84	0	335	32	31	17	18	1.94
39144534--39144783	86	2.9	86	89	0	376	31	31	18	19	1.95
39146038--39146062	12	2.1	12	100	0	50	48	8	8	36	1.62
39146693--39146732	15	2.9	13	82	13	53	47	2	2	47	1.29
39150471--39150512	14	3.0	14	83	13	59	28	40	0	30	1.57
39150669--39150701	14	2.3	15	94	5	59	36	33	0	30	1.58
39151105--39151369	81	3.3	80	81	8	319	30	27	20	22	1.98
39151232--39151300	34	2.0	34	88	2	102	30	27	17	24	1.97
39151117--39151340	75	2.9	74	83	10	254	31	26	19	22	1.98
39151159--39151372	115	1.9	114	90	3	340	31	28	19	20	1.97
39151105--39151369	40	6.7	41	81	7	332	30	27	20	22	1.98
39156935--39156963	6	5.0	6	91	8	51	17	0	0	82	0.66
39158924--39159006	31	2.8	29	80	7	78	36	12	10	40	1.77
39159345--39159377	14	2.3	15	89	5	50	66	3	3	27	1.21
39159611--39159639	12	2.5	12	94	5	51	6	13	0	79	0.93
39165844--39166182	44	7.8	44	71	7	190	28	26	18	26	1.98
39165843--39166238	218	1.8	218	88	1	605	27	26	18	26	1.98
39180139--39180167	14	2.1	14	100	0	58	58	13	13	13	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39185031--39185090	24	2.5	25	75	8	61	15	40	8	36	1.77
39185069--39185130	30	2.1	30	81	0	70	16	30	6	46	1.72
39188300--39188351	24	2.2	24	85	0	68	53	9	3	32	1.51
39194508--39194537	11	2.6	11	94	5	51	36	3	0	60	1.14
39204526--39204598	20	3.8	20	75	8	71	68	4	1	26	1.15
39205460--39205689	89	2.6	87	82	5	241	39	18	10	31	1.85
39205789--39205931	9	15.6	9	71	16	80	67	2	2	27	1.15
39205840--39205873	8	4.4	8	92	3	52	73	0	0	26	0.83
39205841--39205940	10	10.7	9	72	20	64	70	3	3	24	1.16
39205841--39205940	30	3.6	29	76	12	102	70	3	3	24	1.16
39205879--39205951	19	3.8	19	78	10	69	68	5	4	21	1.27
39207784--39207840	19	2.8	21	74	15	57	22	7	1	68	1.23
39207885--39207955	19	3.7	19	78	9	81	28	4	4	63	1.32
39207846--39207936	29	3.1	29	70	9	78	30	4	2	62	1.27
39207826--39207956	58	2.2	58	80	10	142	29	6	3	61	1.35
39208689--39208728	20	2.0	20	100	0	80	20	20	10	50	1.76
39210804--39211229	114	3.7	113	89	2	620	37	18	20	23	1.94
39211937--39212023	21	4.1	20	73	16	77	16	0	31	52	1.43
39212113--39212152	21	1.9	21	89	0	62	22	0	30	47	1.52
39212094--39212145	14	3.7	14	73	0	59	17	0	34	48	1.48
39212515--39212552	20	1.9	20	94	0	67	34	0	7	57	1.28
39213175--39213203	15	1.9	15	100	0	58	37	0	13	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39213157--39213226	16	3.9	16	69	25	50	41	0	10	48	1.36
39213199--39213249	25	2.1	24	85	3	66	47	0	5	47	1.26
39215054--39215747	9	79.4	9	65	18	204	46	18	2	32	1.64
39215050--39215104	21	2.8	19	86	10	83	45	14	1	38	1.56
39215166--39215208	20	2.2	19	87	4	59	55	11	2	30	1.48
39215172--39215220	15	3.5	15	75	16	59	57	12	2	28	1.46
39215166--39215295	21	6.0	21	77	16	115	48	17	2	31	1.60
39215250--39215627	34	11.1	34	68	11	134	45	20	2	30	1.65
39215281--39215346	25	2.6	25	85	0	78	45	22	3	28	1.67
39215186--39215745	16	32.8	16	67	17	143	46	19	2	31	1.64
39215338--39215386	25	2.0	25	87	0	71	48	18	0	32	1.48
39215363--39215686	120	2.7	120	95	0	576	45	20	3	31	1.68
39215649--39215718	25	2.8	25	80	0	77	44	17	4	34	1.68
39221614--39221757	43	3.3	41	76	10	135	29	16	25	28	1.97
39221639--39221921	41	6.7	42	77	4	178	26	18	25	29	1.98
39221680--39221921	41	5.8	41	77	2	214	23	19	26	30	1.98
39223867--39223904	20	1.9	21	84	10	53	44	5	7	42	1.56
39224268--39224297	10	3.0	10	90	0	51	30	23	0	46	1.52
39225673--39225741	20	3.5	20	82	4	68	33	7	13	46	1.70
39231412--39231458	21	2.2	21	88	0	76	40	8	14	36	1.77
39232656--39232694	9	4.4	9	83	6	53	53	2	7	35	1.43
39232650--39232685	17	2.1	17	94	0	63	52	5	8	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39238288--39238448	46	3.5	46	86	0	198	17	21	15	45	1.85
39238425--39238587	45	3.6	45	86	0	236	24	21	17	36	1.94
39238425--39238624	90	2.2	90	82	0	238	23	20	18	38	1.94
39239257--39239296	21	2.0	20	85	5	53	47	2	22	27	1.64
39244875--39244916	21	2.0	21	85	4	57	21	14	26	38	1.91
39245173--39245389	50	4.3	50	80	2	238	38	22	12	25	1.90
39245251--39245385	25	5.4	25	75	11	114	39	22	12	25	1.89
39258988--39259233	122	2.0	122	100	0	492	38	30	13	17	1.89
39263037--39263084	25	1.9	25	82	0	60	14	0	10	75	1.06
39267262--39267292	16	1.9	16	100	0	62	32	25	9	32	1.88
39285575--39285673	49	2.0	49	100	0	198	42	17	8	32	1.78
39291113--39291302	50	3.8	50	84	5	231	22	29	21	26	1.99
39300156--39300240	25	3.4	25	90	0	125	29	18	24	27	1.98
39302884--39302996	56	2.0	56	96	0	208	43	3	3	49	1.37
39303311--39303604	43	6.9	43	90	0	376	24	27	20	28	1.99
39304040--39304126	45	1.9	46	90	2	140	33	2	21	42	1.66
39304071--39304102	16	2.0	16	100	0	64	31	0	25	43	1.55
39304213--39304249	15	2.3	16	90	9	58	37	45	5	10	1.62
39304555--39304595	21	2.0	21	85	9	57	0	14	7	78	0.96
39305198--39305234	18	2.1	18	90	10	58	32	0	5	62	1.18
39305182--39305213	12	2.7	12	95	0	55	31	3	6	59	1.38
39305550--39305622	23	3.2	24	75	12	64	35	1	4	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39306677--39306733	9	6.6	9	82	8	73	33	0	21	45	1.52
39306671--39306724	25	2.2	25	89	0	81	35	0	18	46	1.50
39306785--39306840	21	2.6	21	80	8	60	32	37	0	30	1.58
39307031--39307086	24	2.3	24	87	0	85	60	0	0	39	0.97
39307039--39307085	13	3.8	13	75	13	55	65	0	0	34	0.93
39307120--39307162	22	2.0	22	90	0	68	32	44	2	20	1.65
39307124--39307178	22	2.5	21	80	8	65	34	47	1	16	1.57
39307173--39307218	21	2.2	21	88	7	67	43	30	0	26	1.55
39307572--39307680	41	2.7	41	88	2	148	25	33	20	21	1.97
39307572--39307750	41	4.4	41	81	2	144	25	29	19	26	1.99
39311614--39311658	16	2.7	16	82	6	54	33	6	15	44	1.73
39311614--39311653	16	2.4	17	83	4	55	35	5	12	47	1.63
39312480--39312690	57	3.8	55	75	12	189	32	19	22	25	1.98
39312470--39312717	116	2.2	112	80	7	284	38	17	20	23	1.93
39312503--39312712	110	1.9	114	85	7	293	34	20	21	24	1.97
39312787--39312907	51	2.3	53	87	4	183	32	24	24	18	1.97
39312787--39312924	51	2.6	52	80	3	161	35	26	21	16	1.95
39312961--39313263	53	5.6	52	69	13	180	33	21	19	24	1.97
39312839--39313271	114	3.8	113	82	5	504	32	21	18	27	1.97
39313079--39313263	52	3.5	53	76	7	194	36	21	18	23	1.95
39315320--39315349	15	2.0	15	93	0	51	23	13	23	40	1.90
39320270--39320317	9	5.6	8	81	16	53	81	2	2	14	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39320268--39320314	20	2.3	20	82	7	51	80	2	2	14	0.89
39325526--39325563	12	3.4	11	86	13	51	50	0	0	50	1.00
39334638--39334688	23	2.2	23	89	0	75	29	5	19	45	1.74
39335590--39335675	6	15.0	6	67	26	53	44	2	2	51	1.27
39335590--39335675	11	7.5	12	68	25	53	44	2	2	51	1.27
39335549--39335683	68	2.0	69	91	1	218	42	2	4	50	1.37
39335590--39335691	20	5.7	18	75	19	81	43	1	4	50	1.35
39339583--39339630	22	2.2	21	79	20	55	33	0	4	62	1.14
39341454--39341497	21	2.1	21	82	0	52	4	6	15	72	1.22
39341735--39341787	27	2.0	27	96	0	97	22	11	5	60	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173