genome.fa.s17.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  93  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29201291--29201321	16	1.9	16	93	0	53	12	9	3	74	1.19
29205239--29206400	138	8.4	138	88	2	1697	40	8	5	44	1.59
29205239--29206400	275	4.2	276	88	1	1711	40	8	5	44	1.59
29205239--29206399	413	2.8	413	91	1	1817	40	8	5	44	1.59
29220798--29221041	28	8.5	28	85	6	287	29	23	22	23	1.99
29221144--29221224	26	3.1	26	80	7	101	35	20	19	23	1.96
29221445--29221820	54	6.9	54	82	7	388	21	15	19	42	1.89
29221429--29221820	81	4.8	80	80	7	375	21	16	19	42	1.89
29221457--29221762	27	11.3	27	86	2	382	20	16	19	43	1.88
29222050--29222084	17	2.0	18	94	5	63	22	42	22	11	1.85
29222051--29222110	20	3.2	19	84	11	63	18	43	23	15	1.87
29230997--29231095	19	5.2	19	75	4	83	38	21	18	22	1.93
29231194--29231235	21	2.1	19	83	16	50	30	19	0	50	1.48
29233664--29233725	25	2.5	25	86	5	81	25	22	22	29	1.99
29233664--29233733	25	2.8	25	84	0	77	25	22	22	28	1.99
29243506--29243574	26	2.5	26	80	17	77	42	8	0	49	1.34
29243528--29243579	26	2.0	26	96	0	95	42	5	0	51	1.25
29243612--29243697	27	3.2	27	83	4	104	30	23	26	19	1.98
29243769--29243838	19	3.7	19	86	3	106	37	8	0	54	1.31
29243769--29243844	37	2.1	37	97	0	143	36	9	0	53	1.33
29244062--29244100	19	2.1	19	85	4	53	35	5	0	58	1.20
29244402--29244472	37	1.9	37	100	0	142	49	0	11	39	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29244408--29244476	19	3.7	19	82	5	97	52	0	10	37	1.36
29244546--29244631	27	3.2	26	83	4	93	19	25	23	31	1.98
29244672--29244759	28	3.3	27	90	6	126	48	0	10	40	1.37
29244672--29244759	27	3.3	27	88	6	126	48	0	10	40	1.37
29244672--29244766	26	3.5	27	87	5	122	50	0	9	40	1.35
29257027--29257251	109	2.1	109	99	0	441	35	7	19	37	1.80
29257493--29257653	27	6.0	27	78	2	162	29	18	24	27	1.98
29264686--29264724	5	7.6	5	82	5	51	41	17	0	41	1.50
29268249--29268358	3	36.7	3	88	0	166	0	30	0	68	0.96
29273076--29273268	101	1.9	101	95	0	350	34	20	25	20	1.96
29277414--29277514	53	1.9	53	87	0	148	36	14	19	28	1.92
29277637--29277801	60	2.7	61	84	2	215	30	12	26	31	1.92
29277756--29277836	32	2.5	32	86	4	101	27	8	29	34	1.87
29277696--29277868	92	1.9	94	81	4	217	32	9	26	31	1.89
29278716--29278836	63	1.9	63	96	0	224	33	17	30	18	1.94
29281371--29281456	26	3.2	26	72	4	82	39	8	23	29	1.83
29281376--29281481	54	2.0	53	83	1	131	35	9	25	29	1.87
29285981--29286026	20	2.3	20	85	7	58	13	23	4	58	1.52
29286317--29286420	50	2.1	50	81	3	120	17	32	22	27	1.96
29291738--29291796	13	4.5	13	82	4	73	40	0	20	38	1.53
29291738--29291826	40	2.2	40	93	0	151	42	1	20	35	1.59
29291728--29291825	13	7.4	13	76	14	67	45	1	18	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29291738--29291822	27	3.2	26	79	11	82	43	1	18	36	1.58
29293259--29293310	24	2.2	24	89	0	77	34	15	11	38	1.83
29293266--29293315	24	2.1	24	100	0	100	34	16	8	42	1.77
29312998--29313022	7	3.6	7	100	0	50	24	0	0	76	0.80
29316295--29316340	24	2.0	24	87	12	69	8	13	0	78	0.97
29322568--29322645	10	7.9	10	76	12	56	35	3	1	58	1.24
29322609--29322645	19	2.0	18	89	5	56	32	0	0	67	0.91
29322600--29322657	19	2.9	19	77	12	55	37	1	0	60	1.07
29344359--29344526	29	5.9	29	77	12	152	41	19	14	25	1.89
29344359--29344500	58	2.4	57	82	9	180	42	19	14	24	1.88
29344485--29344553	26	2.7	26	81	0	84	36	23	21	18	1.95
29344686--29344730	24	1.9	24	86	4	65	40	11	0	48	1.39
29345803--29345861	29	2.0	29	100	0	118	20	23	13	42	1.88
29347828--29347889	27	2.3	27	88	2	90	16	12	20	50	1.78
29358838--29358979	42	3.2	42	77	18	169	33	17	16	32	1.93
29365328--29365363	18	2.0	18	88	0	54	22	16	22	38	1.93
29365366--29365443	37	2.1	37	90	0	120	29	12	19	38	1.89
29371019--29371093	31	2.6	28	77	12	80	37	0	1	61	1.05
29371226--29371264	16	2.4	17	87	12	64	28	0	2	69	1.02
29372226--29372294	16	4.2	16	90	3	111	26	1	36	36	1.66
29372275--29372365	45	2.0	45	85	2	121	27	6	28	37	1.82
29372530--29372564	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29372771--29372805	18	2.0	17	88	5	52	54	0	0	45	0.99
29372513--29373134	119	5.2	120	97	1	1142	47	5	2	43	1.40
29372513--29373134	241	2.6	241	96	1	1144	47	5	2	43	1.40
29376157--29376266	33	3.3	33	81	11	136	31	8	17	42	1.78
29376213--29376429	51	4.0	51	85	15	303	28	7	18	46	1.76
29376263--29376367	33	3.3	33	63	12	92	27	7	18	46	1.76
29376312--29376339	12	2.3	12	100	0	56	21	0	21	57	1.41
29376261--29376390	63	2.1	63	100	0	260	27	6	18	47	1.72
29376213--29376429	114	1.9	113	97	2	409	28	7	18	46	1.76
29376496--29376674	84	2.1	86	96	3	337	47	7	3	40	1.51
29381288--29381348	18	3.2	20	81	11	58	62	3	0	34	1.12
29381297--29381348	10	5.6	9	76	15	52	65	1	0	32	1.04
29382205--29382320	10	12.4	9	65	17	58	62	2	3	31	1.25
29382592--29382647	20	2.7	20	75	13	60	28	7	0	64	1.20
29382662--29382718	20	3.2	17	80	11	62	31	3	0	64	1.10
29382626--29382704	29	2.8	29	74	1	70	39	2	0	58	1.12
29382662--29382713	17	2.8	18	83	11	61	32	1	0	65	1.04
29385857--29385965	27	4.0	27	84	1	128	23	16	19	40	1.91
29387404--29387457	25	2.2	25	83	6	65	22	40	9	27	1.84
29392347--29392398	21	2.6	21	90	6	81	46	15	19	19	1.85
29392347--29392408	21	3.0	21	86	4	65	45	16	20	17	1.86
29394479--29394559	5	16.6	5	82	14	98	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29395156--29395199	23	1.9	23	90	9	72	54	0	18	27	1.44
29395436--29395482	24	2.0	23	84	12	60	51	4	14	29	1.62
29401782--29401854	34	2.3	33	81	9	80	45	0	1	53	1.09
29401793--29401848	24	2.4	23	82	8	69	46	0	1	51	1.11
29401778--29401853	5	15.6	5	74	20	63	43	0	1	55	1.08
29401778--29401849	15	5.1	15	78	8	71	43	0	1	55	1.08
29401783--29401850	24	2.8	23	77	16	66	44	0	1	54	1.09
29402068--29402125	30	2.0	29	82	3	71	58	5	36	0	1.20
29402697--29402743	24	2.0	23	84	12	60	51	4	14	29	1.62
29403229--29403298	4	17.2	4	94	2	122	27	0	24	48	1.51
29408291--29408421	60	2.2	61	79	4	140	38	3	11	47	1.55
29408378--29408419	22	2.0	21	85	4	57	30	4	16	47	1.67
29411116--29412218	153	7.3	150	85	7	1400	51	7	9	30	1.63
29411107--29412203	452	2.4	456	88	5	1604	51	7	9	31	1.62
29411116--29412217	605	1.8	602	88	5	1684	51	7	9	30	1.63
29412228--29412270	22	2.0	22	90	0	68	11	39	32	16	1.84
29413835--29413876	21	2.0	22	90	4	68	61	0	35	2	1.09
29417589--29417654	27	2.4	27	89	0	96	31	21	18	28	1.96
29421227--29421253	2	13.5	2	100	0	54	51	48	0	0	1.00
29422728--29422755	8	3.5	8	100	0	56	75	0	0	25	0.81
29423751--29423808	26	2.2	26	90	0	98	29	22	15	32	1.95
29435494--29435601	47	2.3	47	82	6	130	44	25	12	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29439792--29439879	27	3.3	27	98	0	167	42	12	11	34	1.79
29443505--29443547	13	3.2	13	80	6	50	62	6	0	30	1.21
29443505--29443554	14	3.7	14	76	7	50	66	6	0	28	1.15
29445182--29445354	89	1.9	89	92	2	294	54	7	6	30	1.55
29445423--29445489	30	2.2	31	81	2	82	71	2	4	20	1.17
29447106--29447626	44	12.0	44	70	11	268	26	21	21	30	1.98
29447286--29447483	89	2.2	89	89	3	292	23	25	19	30	1.98
29447881--29447965	44	1.9	44	97	0	161	30	29	17	22	1.97
29447971--29448236	88	3.0	88	92	0	442	24	24	23	27	2.00
29447971--29448198	44	5.2	45	69	10	173	22	25	23	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173