genome.fa.s17.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  84  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26259846--26260073	50	4.5	50	83	6	262	21	29	21	27	1.98
26262324--26262543	38	5.8	38	80	2	226	34	26	19	19	1.96
26262313--26262543	76	3.0	75	81	5	257	35	25	19	19	1.95
26262314--26262537	114	2.0	114	84	3	299	34	26	19	18	1.95
26270745--26271323	287	2.0	287	98	0	1113	42	18	11	28	1.84
26271655--26271687	12	2.8	12	100	0	66	57	0	0	42	0.98
26271957--26271985	15	1.9	15	100	0	58	41	34	13	10	1.79
26271972--26272046	38	2.0	38	83	0	96	37	30	14	17	1.90
26281163--26281252	44	2.0	46	82	4	112	52	1	22	24	1.54
26289276--26289336	18	3.4	18	83	0	86	21	26	16	36	1.94
26289267--26289336	36	1.9	36	94	0	122	21	24	17	37	1.94
26289317--26289414	29	3.4	29	75	9	92	13	21	22	42	1.87
26289330--26289421	29	3.2	29	79	3	96	14	25	20	40	1.90
26292253--26292370	43	2.7	43	83	7	150	32	26	19	22	1.97
26292989--26293045	25	2.2	25	78	12	62	57	17	5	19	1.58
26294814--26294888	28	2.7	28	82	0	96	13	22	24	40	1.90
26296383--26296482	48	2.1	48	94	0	173	44	15	19	22	1.87
26296639--26296668	14	2.1	14	100	0	60	33	20	0	46	1.51
26299966--26300015	25	2.0	25	92	0	82	24	22	6	48	1.73
26306639--26306670	14	2.3	14	94	0	55	59	9	0	31	1.29
26308844--26308876	17	2.0	17	94	5	59	12	0	15	72	1.12
26315145--26315191	20	2.3	22	75	20	57	17	2	6	74	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26325900--26325952	28	1.9	27	85	11	72	37	0	3	58	1.16
26331905--26331936	2	16.0	2	100	0	64	50	50	0	0	1.00
26333639--26333708	12	5.8	12	75	0	68	24	17	10	48	1.77
26333629--26333707	24	3.3	24	94	1	133	24	16	11	48	1.79
26338659--26338698	18	2.2	18	86	4	53	12	27	0	60	1.33
26338771--26338831	18	3.4	17	80	11	59	8	19	3	68	1.29
26339816--26339866	12	4.2	12	82	5	66	19	1	5	72	1.15
26342091--26342194	23	4.5	22	78	10	93	30	13	16	39	1.87
26349241--26349342	23	4.4	23	79	4	98	40	26	15	17	1.90
26352885--26352935	10	5.1	10	75	17	52	27	15	31	25	1.96
26352887--26352935	20	2.5	20	89	0	80	26	16	32	24	1.96
26357127--26357177	20	2.5	21	84	9	70	27	15	29	27	1.96
26359826--26359855	15	1.9	16	93	6	53	20	6	0	73	1.05
26366485--26367281	396	2.0	396	99	0	1576	30	17	13	38	1.88
26376162--26376221	18	3.3	18	76	19	54	70	0	3	26	1.03
26379485--26379520	18	2.1	18	89	5	56	19	0	25	55	1.43
26379484--26379520	17	2.1	19	80	15	51	18	0	24	56	1.41
26382689--26382738	24	2.1	24	92	0	82	40	20	2	38	1.64
26385558--26385602	18	2.4	19	85	3	65	11	6	2	80	0.99
26396816--26396952	45	3.0	45	100	0	274	37	18	29	15	1.91
26397542--26397579	18	2.1	19	95	5	69	52	0	26	21	1.47
26398837--26398930	49	1.9	49	91	0	152	42	6	24	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26400946--26400986	20	2.0	20	90	9	66	65	21	2	9	1.34
26401597--26401633	16	2.3	16	100	0	74	37	5	35	21	1.77
26401615--26401707	44	2.1	46	89	4	145	30	4	29	36	1.77
26401615--26401712	46	2.3	44	84	11	125	30	4	30	34	1.76
26403384--26403487	49	2.1	49	87	3	147	49	11	8	30	1.69
26405246--26405422	66	2.7	64	90	3	275	31	10	7	50	1.66
26405539--26405601	32	2.0	32	100	0	126	36	9	12	41	1.76
26405804--26405862	25	2.4	25	97	0	109	42	18	10	28	1.83
26406923--26407156	130	1.8	130	98	0	450	38	15	11	33	1.85
26409708--26409744	2	18.5	2	94	0	65	0	51	0	48	1.00
26414663--26414802	70	2.0	70	97	0	262	22	11	20	45	1.82
26421179--26421210	16	2.0	16	93	0	55	0	21	0	78	0.76
26421179--26421207	10	2.7	11	94	5	51	0	20	0	79	0.74
26423421--26423565	69	2.1	70	87	3	204	35	15	14	34	1.88
26423767--26423796	15	2.0	15	93	0	51	26	3	33	36	1.73
26423861--26423901	18	2.2	19	86	4	57	36	4	4	53	1.44
26425846--26425934	26	3.4	25	75	7	97	50	2	1	46	1.21
26425857--26426006	57	2.7	57	84	12	170	52	3	0	43	1.22
26436009--26436090	33	2.6	32	79	9	87	36	2	3	57	1.30
26436012--26436083	27	2.6	27	79	14	76	37	2	4	55	1.34
26436065--26436109	23	2.0	23	82	8	56	28	2	4	64	1.25
26436080--26436130	15	3.6	14	76	10	50	29	3	1	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26436073--26436130	30	2.0	29	86	10	82	29	3	1	65	1.19
26439338--26439454	35	3.3	35	80	3	101	15	14	29	40	1.87
26441656--26441739	17	4.9	17	76	0	78	45	19	8	27	1.78
26444610--26444670	18	3.4	18	83	0	77	44	18	8	29	1.78
26444855--26444887	17	2.1	16	88	11	50	51	6	3	39	1.42
26446409--26446460	22	2.3	22	75	21	54	34	7	0	57	1.27
26446411--26446477	32	2.1	31	83	8	82	38	7	0	53	1.29
26446837--26447003	88	1.9	87	89	6	257	43	14	14	28	1.84
26450543--26450756	90	2.4	90	83	0	257	30	18	19	31	1.95
26450543--26450756	45	4.8	45	84	0	230	30	18	19	31	1.95
26454429--26454453	13	1.9	13	100	0	50	48	20	0	32	1.50
26455305--26455340	11	3.2	11	92	4	54	30	13	16	38	1.88
26480278--26480322	14	3.1	15	81	15	58	35	2	0	62	1.08
26483046--26483089	22	2.0	22	100	0	88	22	9	18	50	1.75
26483291--26483330	19	2.1	19	100	0	80	20	15	5	60	1.53
26484169--26484256	27	3.3	27	87	6	133	30	22	32	13	1.93
26484785--26484819	17	2.0	17	88	5	52	48	0	17	34	1.47
26485915--26485966	23	2.3	23	90	3	88	25	30	0	44	1.54
26485945--26486050	51	2.1	51	92	0	176	28	27	0	44	1.55
26486051--26486116	10	6.5	10	78	3	69	36	0	0	63	0.95
26486052--26486116	31	2.1	31	97	0	121	35	0	0	64	0.94
26486051--26486110	21	2.9	21	85	2	68	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26487197--26487221	7	3.6	7	100	0	50	28	0	12	60	1.32
26488303--26488371	25	2.7	25	84	2	93	44	2	11	40	1.56
26488388--26488473	40	2.1	40	93	2	145	39	18	22	19	1.92
26491103--26491452	124	2.8	124	94	0	628	31	21	16	30	1.95
26491651--26491717	29	2.3	29	78	0	71	43	17	16	22	1.88
26492372--26492423	26	2.0	26	92	3	88	55	0	9	34	1.32
26492374--26492429	26	2.2	26	87	6	78	53	1	8	35	1.43
26492708--26492736	7	4.1	7	100	0	58	58	0	27	13	1.36
26502109--26502197	40	2.2	40	85	0	115	35	12	14	37	1.84
26502279--26502319	19	2.1	19	86	4	55	58	4	0	36	1.20
26506132--26506198	33	2.0	33	100	0	134	22	14	14	47	1.81
26513297--26513343	23	2.0	23	84	8	60	40	8	10	40	1.70
26515840--26515909	27	2.6	27	95	2	113	31	28	12	27	1.93
26515840--26515937	28	3.5	28	90	2	135	31	28	13	26	1.94
26523375--26523411	19	1.9	19	88	0	56	13	5	2	78	1.03
26526022--26526111	22	4.2	22	69	19	64	63	3	8	24	1.39
26539425--26539453	9	3.2	9	100	0	58	68	0	0	31	0.89
26540010--26540040	9	3.4	9	90	0	53	38	22	12	25	1.90
26540536--26540593	15	3.9	15	84	15	84	20	0	3	75	0.94
26540539--26540593	22	2.5	22	77	11	58	21	0	3	74	0.97
26544341--26544389	20	2.5	20	86	0	62	38	8	24	28	1.84
26546483--26546536	21	2.6	21	85	2	65	5	24	0	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26546470--26546524	15	3.7	15	92	4	85	5	20	0	74	1.01
26547830--26547879	26	1.9	26	91	0	82	34	22	22	22	1.97
26548103--26548260	26	6.1	26	86	2	219	24	17	21	36	1.95
26548103--26548260	78	2.0	78	91	2	255	24	17	21	36	1.95
26553461--26553498	6	6.5	6	93	6	69	84	0	15	0	0.63
26562313--26562371	30	2.0	30	90	3	93	49	11	8	30	1.69
26565161--26565224	31	2.1	31	100	0	128	18	28	14	39	1.90
26570929--26570958	12	2.4	13	94	5	53	66	6	6	20	1.38
26577211--26577520	153	2.0	153	94	0	539	50	13	9	25	1.72
26578463--26578561	24	4.2	24	78	2	101	42	21	15	21	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173