genome.fa.s17.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  170  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51211981--51212044	31	2.1	31	100	0	128	40	15	9	34	1.80
51213681--51213728	24	2.0	25	83	4	62	62	6	6	25	1.42
51222928--51222952	13	1.9	13	100	0	50	40	44	0	16	1.47
51222956--51223036	25	3.5	24	68	21	75	44	30	2	22	1.66
51222936--51223058	44	2.8	44	92	1	212	43	32	1	22	1.63
51223392--51223435	22	2.0	21	83	12	54	20	15	2	61	1.45
51223554--51223593	17	2.4	16	84	8	53	27	10	22	40	1.86
51223554--51223593	8	4.9	8	81	6	53	27	10	22	40	1.86
51238516--51238586	35	2.0	35	100	0	142	33	8	14	43	1.75
51242284--51242317	17	2.0	17	88	0	50	61	8	20	8	1.52
51243671--51243703	16	2.1	16	100	0	66	30	0	27	42	1.56
51255591--51255845	87	2.9	87	83	4	327	46	18	11	23	1.82
51260311--51260394	31	2.7	31	78	7	80	22	21	21	34	1.97
51260720--51260819	31	3.2	31	76	5	94	24	21	21	34	1.97
51260185--51261036	424	2.0	424	99	0	1695	29	17	20	32	1.96
51267329--51267361	15	2.2	15	89	10	50	0	30	18	51	1.46
51270593--51270631	18	2.2	18	86	9	53	53	0	0	46	1.00
51275632--51275656	9	2.8	9	100	0	50	52	0	0	48	1.00
51275856--51275993	69	2.0	69	91	2	224	31	12	10	45	1.75
51276498--51276542	18	2.4	18	85	3	63	35	6	11	46	1.66
51281948--51282006	30	1.9	31	89	3	93	47	16	6	28	1.72
51283675--51283708	3	11.3	3	100	0	68	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51285352--51285407	22	2.5	23	82	2	69	51	1	1	44	1.22
51285383--51285422	16	2.5	16	91	0	62	47	2	7	42	1.45
51285433--51285572	59	2.4	59	95	0	244	38	4	9	47	1.55
51285473--51285551	20	4.0	20	65	21	58	39	5	8	46	1.57
51285554--51285581	9	3.1	9	100	0	56	32	0	10	57	1.33
51287268--51287334	9	7.0	9	71	18	55	34	1	0	64	1.03
51287236--51287329	40	2.3	40	90	3	145	32	3	1	62	1.18
51287269--51287302	17	2.0	17	88	0	50	35	0	0	64	0.94
51287277--51287337	31	2.0	31	90	6	97	36	1	0	62	1.05
51291476--51291501	3	8.7	3	100	0	52	0	30	0	69	0.89
51295522--51295784	132	2.0	131	86	4	368	28	16	19	35	1.94
51296263--51296291	10	2.9	10	100	0	58	10	20	20	48	1.79
51296263--51296301	20	2.0	20	85	10	53	12	20	20	46	1.83
51301549--51301591	18	2.3	19	84	15	54	30	2	2	65	1.18
51309349--51309410	19	3.2	19	78	15	65	61	3	0	35	1.12
51309424--51309468	9	4.7	9	81	10	54	71	2	2	24	1.09
51312118--51312142	13	1.9	13	100	0	50	68	0	8	24	1.16
51314655--51314714	29	2.0	29	90	3	93	48	8	15	28	1.73
51317626--51317651	11	2.4	11	100	0	52	0	7	15	76	0.99
51318791--51318943	58	2.6	59	77	10	159	29	23	14	32	1.94
51322533--51323159	263	2.4	262	88	1	907	35	19	14	29	1.92
51336858--51336907	8	6.1	8	79	4	55	24	2	2	72	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51349252--51349285	4	8.2	4	87	6	50	47	2	0	50	1.16
51350027--51350073	21	2.3	21	85	3	60	34	2	6	57	1.36
51352298--51352366	26	2.6	27	73	13	72	55	0	0	44	0.99
51362233--51362577	147	2.3	147	91	2	550	28	20	23	28	1.99
51369773--51369807	12	2.9	12	95	0	61	65	2	25	5	1.28
51373853--51373912	30	2.0	30	83	6	77	31	15	11	41	1.82
51379059--51379122	31	2.1	31	100	0	128	34	15	12	37	1.85
51379908--51379939	6	5.3	6	100	0	64	50	15	0	34	1.45
51381442--51381474	16	2.1	16	88	11	50	42	0	9	48	1.35
51384211--51384261	15	3.1	16	80	11	50	43	1	0	54	1.11
51384222--51384279	26	2.4	23	76	20	64	43	3	0	53	1.17
51384225--51384279	24	2.2	25	84	12	78	41	3	0	54	1.18
51384314--51384355	20	2.0	22	86	9	61	45	0	0	54	0.99
51384421--51384477	15	3.5	15	73	17	60	52	1	0	45	1.11
51385771--51385820	24	2.1	24	84	0	64	42	2	4	52	1.31
51388201--51388241	15	2.7	15	80	0	55	26	9	2	60	1.40
51390315--51390366	25	2.1	25	85	0	68	63	1	0	34	1.06
51391619--51391661	18	2.4	18	76	3	52	30	2	0	67	1.03
51392006--51392050	21	2.1	22	84	12	58	44	11	11	33	1.75
51410218--51410430	110	1.9	110	84	0	282	39	22	10	27	1.86
51412668--51412718	18	2.9	18	83	13	63	37	3	13	45	1.63
51416252--51416293	16	2.7	15	85	7	66	28	23	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51417647--51417678	13	2.3	15	89	10	50	40	0	6	53	1.26
51419035--51419385	90	3.8	90	84	5	438	22	17	25	34	1.96
51419318--51419456	70	2.0	70	84	2	181	23	18	20	38	1.94
51419761--51419785	2	12.5	2	100	0	50	52	48	0	0	1.00
51438207--51438266	26	2.2	29	85	8	81	31	5	1	61	1.27
51441723--51441779	29	2.0	29	82	6	71	24	10	8	56	1.61
51451529--51451558	5	6.0	5	100	0	60	0	20	0	80	0.72
51465757--51465781	2	12.5	2	100	0	50	48	0	0	52	1.00
51468508--51468538	12	2.7	12	95	5	55	70	6	0	22	1.09
51469336--51469373	16	2.3	17	86	4	51	10	7	10	71	1.32
51474127--51474180	28	1.9	28	84	0	72	53	9	11	25	1.66
51477726--51477765	19	2.1	19	86	9	55	65	0	2	32	1.06
51479153--51479201	22	2.2	22	85	7	64	30	6	8	55	1.54
51485302--51485562	124	2.1	127	93	3	456	43	12	22	21	1.86
51486276--51486331	21	2.5	22	72	18	62	41	1	8	48	1.45
51491625--51491700	32	2.4	32	88	2	118	27	11	11	48	1.75
51495217--51495283	31	2.2	30	79	10	73	32	10	10	46	1.72
51497783--51497835	18	2.9	18	80	2	61	41	45	1	11	1.51
51497939--51498032	9	10.4	9	81	4	109	25	10	23	40	1.87
51498254--51498319	27	2.4	28	85	5	82	24	9	12	54	1.66
51499222--51499268	22	2.2	21	85	11	60	46	0	0	53	1.00
51502546--51502588	21	2.0	22	81	4	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51509930--51509969	20	2.0	21	90	5	64	50	0	2	47	1.14
51522997--51523037	20	2.0	22	85	9	59	48	0	0	51	1.00
51522997--51523046	20	2.5	20	83	6	57	50	0	0	50	1.00
51526098--51526136	2	19.5	2	100	0	78	0	0	48	51	1.00
51532669--51532820	30	5.1	30	84	4	193	34	16	2	46	1.61
51532669--51532796	59	2.2	60	90	4	197	33	16	2	47	1.59
51533163--51533203	20	2.0	20	90	9	66	85	0	14	0	0.60
51533163--51533205	9	4.8	9	83	8	52	83	0	16	0	0.64
51533315--51533361	14	3.4	14	76	8	51	80	10	6	2	0.96
51533386--51533431	24	1.9	24	90	0	74	23	39	32	4	1.75
51533496--51533540	12	3.8	12	85	8	65	80	0	20	0	0.72
51533984--51534133	18	8.1	18	73	12	115	30	13	10	45	1.77
51534001--51534044	24	1.9	22	90	9	70	43	6	9	40	1.63
51534026--51534103	35	2.2	35	84	4	95	26	11	12	48	1.75
51536508--51536540	12	2.8	12	86	13	50	27	0	0	72	0.85
51536511--51536543	13	2.6	13	95	4	59	27	0	0	72	0.85
51536600--51536653	27	2.0	27	92	0	90	31	20	31	16	1.95
51536808--51536879	8	8.4	8	71	14	54	47	15	1	36	1.54
51536869--51536955	22	3.7	22	82	14	120	52	13	1	32	1.48
51536861--51536960	49	2.0	49	94	0	173	53	13	1	33	1.46
51536996--51537052	27	2.1	27	90	0	87	35	1	14	49	1.53
51537216--51537267	19	2.8	19	91	5	81	50	9	0	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51537478--51537518	19	2.2	19	95	0	73	51	12	0	36	1.40
51537535--51537610	27	2.8	27	91	0	125	22	36	22	18	1.95
51543663--51543717	25	2.2	26	83	9	69	76	7	0	16	1.00
51543681--51543722	20	2.0	21	86	9	59	76	2	2	19	1.01
51544242--51544277	18	2.0	18	88	0	54	0	16	2	80	0.83
51545001--51545056	23	2.4	23	77	11	60	26	1	5	66	1.23
51550694--51550740	24	2.0	24	83	4	60	65	4	12	17	1.40
51552702--51552749	23	2.1	23	96	0	87	45	4	31	18	1.68
51552721--51552801	42	1.9	42	92	5	137	45	6	23	24	1.75
51552702--51552791	23	4.1	23	65	16	73	45	5	26	22	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173