genome.fa.s17.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  57  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16168763--16169039	142	2.0	142	94	0	482	28	20	17	33	1.95
16170359--16170416	14	4.1	14	79	16	57	8	13	1	75	1.10
16170377--16170425	22	2.2	22	85	0	62	4	12	2	81	0.91
16170391--16170428	8	4.8	8	83	9	51	0	13	2	84	0.73
16170391--16170425	15	2.2	16	90	5	54	0	11	2	85	0.69
16171217--16171259	7	6.0	7	80	2	50	2	20	0	76	0.89
16181926--16182012	43	2.0	43	97	0	165	31	9	21	37	1.85
16197773--16197824	28	1.9	26	88	7	77	28	26	23	21	1.99
16197948--16198013	26	2.5	27	83	11	84	36	22	21	19	1.95
16200782--16200851	26	2.7	26	93	0	113	25	27	22	24	2.00
16201508--16201550	21	2.0	21	100	0	86	37	4	25	32	1.77
16205545--16205606	32	2.0	32	87	9	92	56	22	0	20	1.42
16206075--16206199	46	2.7	45	79	7	144	27	24	16	32	1.96
16206083--16206213	46	2.8	45	77	8	131	29	25	15	30	1.96
16209948--16210038	32	2.9	29	83	9	92	37	0	29	32	1.58
16210959--16210983	12	2.1	12	100	0	50	44	0	8	48	1.32
16212791--16212871	33	2.5	33	87	0	117	16	48	9	25	1.77
16213189--16213240	26	2.0	26	92	0	86	48	9	17	25	1.77
16213215--16213346	48	2.8	48	90	0	192	46	9	12	31	1.73
16217086--16217112	11	2.5	11	100	0	54	66	7	0	25	1.17
16217314--16217377	4	15.5	4	78	18	69	1	26	0	71	0.94
16217313--16217370	14	4.1	14	72	16	57	1	25	0	72	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16217317--16217381	22	3.0	21	93	4	105	1	30	0	67	1.00
16217470--16217543	27	2.7	27	95	0	130	24	27	28	20	1.99
16222611--16222680	34	2.1	34	88	0	104	35	12	15	35	1.86
16224859--16224900	21	2.0	21	85	0	57	28	26	19	26	1.98
16231186--16231224	19	2.1	19	85	9	53	51	0	2	46	1.14
16231890--16231920	2	15.5	2	100	0	62	48	0	51	0	1.00
16235835--16235877	19	2.3	19	95	0	77	20	13	55	9	1.66
16240904--16241294	34	11.5	34	64	18	125	32	14	20	32	1.92
16240920--16241596	136	5.0	134	78	7	585	33	11	22	32	1.90
16240908--16241494	204	2.9	204	80	2	615	33	12	21	32	1.91
16240843--16241598	68	11.1	68	72	6	384	34	12	21	32	1.90
16245282--16245325	16	2.7	17	77	22	58	27	22	11	38	1.88
16257724--16257786	15	4.2	14	69	15	54	31	14	3	50	1.58
16257738--16257816	35	2.3	35	93	0	131	37	13	3	44	1.63
16258542--16258576	15	2.3	15	90	5	52	80	0	20	0	0.72
16259418--16259471	7	8.0	7	87	8	85	68	0	16	14	1.21
16259418--16259471	13	4.0	14	85	9	85	68	0	16	14	1.21
16259418--16259471	20	2.7	20	97	0	99	68	0	16	14	1.21
16260664--16261508	347	2.4	347	91	0	1341	30	22	22	23	1.99
16260664--16261508	87	9.7	87	91	0	1314	30	22	22	23	1.99
16260664--16261509	434	1.9	435	90	0	1334	30	22	22	23	1.99
16261479--16261601	44	2.8	44	69	13	108	32	16	22	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16263610--16263671	28	2.2	27	80	11	72	35	3	0	61	1.12
16266619--16266717	43	2.3	43	80	3	110	27	18	25	29	1.98
16274346--16274408	23	2.7	22	76	16	65	19	7	20	52	1.70
16274427--16274515	23	4.0	22	73	17	78	19	7	21	51	1.71
16274314--16274543	107	2.1	107	97	0	433	26	6	23	44	1.77
16276070--16276221	47	3.3	47	70	15	154	44	3	3	48	1.37
16276056--16276335	91	3.2	89	88	7	393	46	3	3	46	1.36
16276133--16276261	47	2.9	43	68	16	109	45	3	3	46	1.39
16276178--16276335	78	2.0	78	92	0	262	46	3	2	48	1.31
16276473--16276507	18	2.0	17	88	5	52	45	0	0	54	0.99
16291019--16291052	15	2.3	15	89	0	50	32	29	0	38	1.58
16292154--16292219	30	2.2	31	81	8	73	62	9	1	27	1.34
16293575--16293600	1	26.0	1	100	0	52	0	0	0	100	0.00
16300129--16300185	26	2.2	26	100	0	114	26	21	22	29	1.99
16304213--16304241	10	2.7	11	94	5	51	62	10	10	17	1.54
16308766--16309264	49	10.3	49	91	2	749	31	10	12	45	1.76
16308766--16309264	97	5.1	97	91	2	761	31	10	12	45	1.76
16309531--16309603	33	2.2	33	85	0	92	26	8	46	19	1.77
16309751--16309797	24	2.0	24	82	0	58	10	21	42	25	1.85
16310413--16310446	14	2.4	14	100	0	68	44	5	14	35	1.70
16311225--16311277	26	2.0	26	96	0	97	32	7	20	39	1.81
16312601--16312651	20	2.4	22	83	6	61	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16319100--16319333	50	4.6	50	76	5	168	22	25	21	29	1.99
16324801--16324947	40	3.7	40	83	5	120	25	27	21	25	2.00
16324847--16325027	80	2.3	80	83	9	219	27	27	20	23	1.99
16324844--16325027	40	4.6	40	81	7	196	28	27	20	23	1.99
16332651--16332797	40	3.7	40	83	5	120	25	27	21	25	2.00
16332697--16332877	80	2.3	80	83	9	219	27	27	20	23	1.99
16332694--16332877	40	4.6	40	81	7	196	28	27	20	23	1.99
16337585--16337819	50	4.6	50	78	6	197	23	25	21	28	1.99
16341917--16342382	233	2.0	233	97	0	878	41	8	14	35	1.75
16343761--16343785	11	2.3	11	100	0	50	32	0	20	48	1.50
16350391--16350434	17	2.5	18	81	3	54	56	2	0	40	1.11
16353019--16353067	26	1.9	25	91	4	80	36	22	12	28	1.90
16361107--16361136	15	1.9	16	93	6	53	63	0	0	36	0.95
16362202--16362245	3	14.7	3	100	0	88	65	0	34	0	0.93
16362877--16362931	27	2.0	27	92	0	92	30	12	20	36	1.90
16366382--16366457	40	1.9	40	97	0	143	31	10	22	35	1.88
16374895--16374931	17	2.2	17	90	0	56	43	13	16	27	1.85
16376682--16376719	18	2.1	18	95	0	67	60	0	18	21	1.36
16376682--16376736	24	2.2	24	78	9	58	61	0	18	20	1.34
16376879--16376943	26	2.5	26	84	0	76	40	9	13	36	1.77
16377266--16377305	21	1.9	21	94	0	71	62	0	2	35	1.09
16377267--16377392	11	12.4	11	71	22	89	59	0	1	38	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16377277--16377399	38	3.2	38	86	7	185	60	0	1	38	1.07
16377299--16377422	17	6.7	17	66	17	59	60	0	0	38	1.02
16380523--16380588	20	3.3	20	75	8	62	15	30	18	36	1.91
16383797--16383842	22	2.1	22	84	8	58	21	6	23	47	1.74
16388028--16388206	90	2.0	90	94	2	315	30	7	17	44	1.77
16391817--16391866	19	2.5	21	78	18	61	60	0	0	40	0.97
16391828--16391873	19	2.5	18	89	3	65	58	2	0	39	1.10
16391833--16391873	19	2.2	19	91	4	66	65	2	0	31	1.05
16392270--16392299	8	3.6	8	95	4	51	13	10	0	76	1.01
16392262--16392306	16	2.6	17	79	6	56	17	6	4	71	1.25
16396934--16397565	132	4.8	132	93	0	1030	27	23	18	30	1.97
16397099--16397294	44	4.5	44	68	16	127	25	22	19	33	1.97
16397549--16397583	18	1.9	18	94	0	61	25	11	37	25	1.90
16397657--16398530	50	17.7	50	76	6	323	26	19	20	33	1.97
16397634--16398538	100	9.2	98	83	6	634	26	19	20	33	1.97
16397823--16398490	150	4.5	149	86	3	746	27	19	20	33	1.96
16399571--16399676	53	2.0	53	96	0	194	19	17	27	34	1.95
16401095--16401156	23	2.7	23	85	2	63	14	3	9	72	1.23
16401104--16401152	14	3.4	14	78	21	57	16	2	10	71	1.22
16409861--16409949	46	1.9	46	90	0	142	23	26	30	19	1.98
16426403--16426487	37	2.3	37	87	4	118	21	22	22	34	1.97
16426603--16426688	42	2.0	42	86	4	120	29	15	15	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16426675--16426699	11	2.3	11	100	0	50	24	12	16	48	1.79
16431135--16431185	22	2.5	20	84	9	66	31	23	3	41	1.73
16431137--16431179	22	2.0	21	90	4	68	25	25	4	44	1.73
16431699--16431729	12	2.6	12	100	0	62	32	41	0	25	1.56
16432419--16432494	5	15.4	5	97	2	145	59	0	0	40	0.98
16432477--16432556	38	2.1	37	84	6	99	43	2	1	52	1.22
16433649--16433788	40	3.6	40	77	8	135	28	16	24	30	1.96
16434157--16434197	18	2.3	17	84	12	55	58	4	0	36	1.20
16434156--16434196	19	2.2	18	86	4	55	60	4	0	34	1.18
16434217--16434274	11	5.5	10	82	11	62	65	5	1	27	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173