genome.fa.s17.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  144  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43653471--43654010	133	4.1	133	91	0	875	29	25	16	29	1.96
43665884--43665918	15	2.3	15	90	0	52	65	11	2	20	1.37
43666297--43666347	26	2.1	24	85	10	68	64	1	1	31	1.15
43667891--43667947	24	2.4	24	85	5	71	35	3	10	50	1.54
43675309--43675477	50	3.4	49	84	3	212	23	21	21	34	1.97
43675398--43675475	25	3.1	25	69	10	70	21	25	21	30	1.98
43677167--43679367	882	2.5	870	85	3	3014	37	17	14	31	1.89
43679819--43679897	13	5.8	13	65	11	50	27	18	24	29	1.98
43679820--43679895	28	2.7	28	81	0	89	27	19	23	28	1.98
43679888--43680063	24	7.4	24	72	12	87	33	15	18	31	1.93
43679958--43680064	24	4.5	24	74	13	98	33	14	18	32	1.92
43679895--43680064	47	3.6	48	79	8	161	34	15	17	32	1.91
43680037--43680257	58	3.8	58	85	4	266	36	12	18	32	1.89
43680237--43680295	18	3.3	18	83	2	75	35	11	20	32	1.89
43680428--43680469	16	2.7	16	77	3	50	28	21	21	28	1.99
43680465--43680535	15	4.7	15	81	5	81	21	9	30	38	1.86
43680465--43680535	31	2.4	30	88	6	108	21	9	30	38	1.86
43682579--43682627	20	2.4	21	86	6	66	63	0	6	30	1.19
43693363--43693416	16	3.4	16	84	0	54	37	3	31	27	1.75
43693396--43693485	45	2.0	44	84	2	117	33	5	27	33	1.80
43693627--43693681	25	2.2	25	84	9	69	52	1	0	45	1.11
43693654--43693853	107	1.9	108	95	1	366	49	6	2	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43693743--43693788	16	2.9	16	78	12	51	52	2	0	45	1.13
43693743--43693797	15	3.7	15	79	13	53	52	1	0	45	1.11
43693658--43693904	107	2.3	107	87	6	346	50	5	2	42	1.36
43693904--43694171	47	5.9	45	69	19	191	47	3	3	45	1.36
43693965--43694013	17	3.1	16	83	13	57	55	0	0	44	0.99
43693970--43694019	18	3.0	17	85	8	59	56	2	0	42	1.11
43693963--43694197	44	5.2	43	71	15	197	48	2	2	45	1.31
43693938--43694196	91	2.8	91	97	0	491	47	2	3	46	1.33
43695683--43695715	16	2.0	17	88	5	50	48	3	27	21	1.64
43699785--43699825	20	2.0	20	90	0	64	46	2	17	34	1.61
43700694--43700897	40	5.1	39	75	5	167	42	24	17	16	1.89
43700694--43700897	80	2.5	80	80	0	228	42	24	17	16	1.89
43709684--43709723	19	2.0	20	85	4	55	45	5	7	42	1.54
43712630--43712721	43	2.1	43	85	0	121	6	18	18	56	1.62
43713299--43713340	22	2.0	22	85	4	59	54	23	4	16	1.61
43715233--43715309	27	2.9	27	80	0	91	19	25	18	36	1.94
43715433--43715547	45	2.6	43	80	11	126	24	24	10	40	1.86
43720516--43720727	106	2.0	106	94	0	370	48	20	10	20	1.78
43729069--43729122	12	4.2	12	77	13	63	46	9	1	42	1.46
43729573--43729604	15	2.1	15	100	0	64	46	0	6	46	1.27
43733498--43733577	30	2.7	30	82	1	99	38	20	16	25	1.92
43737097--43737169	26	2.8	26	82	0	83	28	16	12	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43737318--43737393	6	12.5	6	87	2	89	18	25	0	56	1.41
43737318--43737393	12	6.2	12	83	3	98	18	25	0	56	1.41
43737318--43737393	18	4.2	18	89	3	98	18	25	0	56	1.41
43748761--43748817	21	2.7	21	75	8	62	17	31	29	21	1.96
43748922--43748969	21	2.3	21	85	0	69	14	35	25	25	1.94
43766644--43766812	53	3.2	52	82	3	205	31	18	23	26	1.97
43769737--43769797	28	2.1	29	85	11	81	26	8	0	65	1.20
43769737--43769811	24	2.9	27	77	16	79	26	6	0	66	1.16
43775135--43775194	30	2.0	31	86	3	86	20	40	0	40	1.52
43780419--43780465	20	2.3	20	85	7	60	23	23	25	27	2.00
43782130--43782188	25	2.4	24	78	15	66	32	1	6	59	1.34
43782132--43782188	26	2.1	25	84	12	69	33	1	7	57	1.36
43782307--43782356	20	2.5	20	87	6	66	26	30	26	18	1.98
43787229--43787295	34	1.9	35	84	3	91	29	7	13	49	1.69
43789822--43789898	31	2.6	30	81	6	93	20	12	12	53	1.72
43793137--43793171	18	1.9	18	100	0	70	45	2	0	51	1.16
43794170--43794210	21	1.9	22	85	5	57	24	4	7	63	1.40
43802784--43802882	6	16.7	6	76	6	58	69	9	9	12	1.36
43802780--43802870	31	2.8	33	93	5	150	71	9	7	10	1.31
43802873--43802914	13	3.2	13	83	10	50	76	0	21	2	0.90
43802867--43802914	6	7.7	6	84	9	51	75	0	20	4	0.97
43802867--43802914	19	2.6	18	77	9	51	75	0	20	4	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43803786--43803819	13	2.5	14	90	4	52	70	0	14	14	1.17
43805111--43805248	42	3.2	43	66	17	122	26	23	25	25	2.00
43805068--43805204	42	3.2	42	66	17	109	29	24	21	24	1.99
43805054--43805361	87	3.5	87	87	0	418	27	23	24	24	2.00
43805618--43805756	44	3.1	44	72	4	134	30	20	21	27	1.98
43810702--43810742	17	2.5	17	88	4	57	73	0	17	9	1.09
43814921--43814962	18	2.2	19	87	8	59	35	4	11	47	1.61
43815599--43815648	19	2.7	19	81	3	66	30	4	2	64	1.23
43815598--43815687	27	3.3	27	74	14	78	35	2	2	60	1.22
43821060--43821097	2	19.0	2	88	0	58	2	52	0	44	1.14
43836866--43836899	16	2.2	15	94	5	59	23	2	0	73	0.97
43838679--43838806	60	2.2	60	95	1	231	41	16	22	19	1.90
43840368--43840559	95	2.0	95	92	2	323	29	26	15	28	1.96
43842454--43842490	19	2.0	19	89	5	58	24	8	10	56	1.60
43857906--43857944	17	2.4	16	86	4	51	66	2	2	28	1.18
43857913--43857945	17	1.9	17	93	0	57	66	0	6	27	1.15
43867416--43867449	10	3.4	10	91	0	50	52	0	5	41	1.25
43867964--43868007	20	2.2	20	88	8	63	29	2	0	68	1.02
43867964--43868019	20	2.8	21	81	5	62	26	3	1	67	1.16
43868074--43868149	40	1.9	40	88	0	116	26	28	13	31	1.93
43883346--43883394	15	3.0	15	73	21	53	46	0	2	51	1.12
43883356--43883399	19	2.4	19	84	3	54	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43883427--43883468	13	2.9	14	80	13	50	45	2	0	52	1.13
43883374--43883518	75	1.9	78	81	9	183	52	1	2	44	1.21
43884842--43884901	17	3.3	18	74	9	50	66	3	0	30	1.07
43886986--43887355	124	3.0	124	92	0	605	29	15	22	32	1.95
43890445--43890512	17	3.8	17	71	16	57	48	1	5	44	1.36
43890331--43890574	116	2.1	116	94	1	427	44	6	9	39	1.64
43890600--43891530	68	13.7	66	74	16	730	25	0	25	48	1.53
43890577--43891530	45	21.0	45	82	10	1105	25	0	25	48	1.52
43890577--43891526	91	10.5	92	84	9	1083	26	0	25	48	1.52
43890569--43891526	23	42.2	23	76	18	829	26	0	25	48	1.52
43891569--43891616	25	1.9	25	100	0	96	39	10	0	50	1.37
43891946--43891981	18	2.0	18	88	0	54	38	11	27	22	1.88
43892624--43892648	7	3.6	7	100	0	50	60	12	0	28	1.32
43892819--43892856	20	1.9	20	84	10	51	55	7	2	34	1.43
43893748--43893790	11	3.8	11	78	6	50	60	0	0	39	0.97
43893796--43893837	11	3.8	11	93	0	66	50	7	23	19	1.72
43898855--43898908	20	2.8	20	82	2	74	59	5	1	33	1.31
43919121--43919189	20	3.5	20	80	11	79	43	4	8	43	1.55
43919105--43919190	40	2.2	40	87	4	120	41	3	9	45	1.53
43920421--43920476	29	1.9	29	85	7	78	53	8	0	37	1.32
43922201--43922239	18	2.1	19	86	13	55	28	17	12	41	1.87
43929816--43929886	2	35.5	2	100	0	142	0	49	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43933746--43933793	17	2.8	18	90	6	73	33	4	4	58	1.36
43962459--43962558	49	2.0	49	94	0	173	39	33	9	19	1.83
43962459--43962534	25	3.1	25	64	17	68	38	35	10	15	1.82
43967635--43967666	11	2.9	11	95	0	55	40	12	9	37	1.75
43970469--43970579	43	2.6	42	83	13	129	29	27	17	26	1.97
43971766--43971797	16	1.9	17	93	6	57	81	3	15	0	0.82
43972539--43972617	3	25.7	3	75	5	68	36	5	1	56	1.29
43977525--43977563	6	6.3	6	90	3	60	71	0	28	0	0.86
43977512--43977563	24	2.1	24	85	7	68	71	0	25	3	1.03
43977909--43977953	22	2.1	22	87	4	65	75	4	13	6	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173