genome.fa.s17.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  114  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35429740--35429779	18	2.2	18	86	0	53	17	30	7	45	1.76
35430356--35431576	22	56.0	22	82	6	1362	46	27	0	25	1.57
35430527--35430582	29	1.9	29	88	0	85	50	30	0	19	1.48
35430356--35431576	109	11.2	108	83	5	1295	46	27	0	25	1.57
35430356--35431576	131	9.3	130	84	6	1244	46	27	0	25	1.57
35433544--35434220	126	5.5	125	81	10	713	30	22	16	30	1.96
35434690--35434743	28	1.9	28	85	7	74	18	9	3	68	1.32
35435469--35435520	25	2.1	26	92	7	90	67	9	3	19	1.35
35435477--35435533	24	2.4	23	80	8	69	66	10	5	17	1.40
35435480--35435534	25	2.3	23	81	12	65	67	10	5	16	1.39
35438586--35439086	44	11.5	44	70	10	280	26	23	19	30	1.98
35438583--35438831	89	2.9	88	76	8	240	24	22	21	30	1.99
35438586--35439050	217	2.1	217	82	5	564	26	22	20	30	1.98
35438850--35439103	89	2.9	89	87	6	349	27	23	18	30	1.98
35439873--35439922	26	1.9	26	91	0	82	60	14	10	16	1.59
35456244--35456278	6	5.8	6	100	0	70	65	0	0	34	0.93
35458757--35458793	19	1.9	19	94	0	65	54	21	0	24	1.45
35459288--35459342	24	2.2	25	87	3	76	36	18	23	21	1.95
35463215--35463263	2	24.5	2	100	0	98	0	51	0	48	1.00
35465815--35465847	16	2.2	16	89	10	52	51	0	9	39	1.34
35466405--35466447	13	3.5	12	84	12	52	32	2	0	65	1.06
35467775--35467854	41	1.9	42	87	5	117	17	38	23	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35467890--35467999	42	2.6	42	85	1	148	16	34	22	26	1.95
35467779--35468103	147	2.2	146	81	1	382	21	32	21	24	1.98
35467932--35468159	105	2.2	104	81	3	262	23	32	19	24	1.98
35470633--35470666	11	3.2	11	91	4	52	29	0	0	70	0.87
35473209--35473323	57	2.0	57	100	0	230	31	19	17	32	1.95
35476254--35476286	13	2.4	14	90	5	50	27	3	0	69	1.03
35479776--35479874	25	4.0	25	73	10	85	26	19	22	32	1.97
35487128--35487184	25	2.3	25	93	0	96	29	21	19	29	1.97
35495089--35495117	15	1.9	15	100	0	58	75	0	0	24	0.80
35500492--35500710	45	4.9	46	78	10	222	30	23	17	27	1.97
35500545--35500694	43	3.4	43	79	11	178	30	25	16	27	1.97
35500492--35500715	89	2.5	89	88	2	317	29	23	18	28	1.97
35505411--35505448	8	4.6	8	90	6	58	76	2	0	21	0.91
35507953--35507983	16	2.0	16	93	6	55	41	25	6	25	1.79
35508767--35508810	21	2.1	21	91	0	70	11	18	27	43	1.84
35510444--35510482	19	2.0	21	85	10	55	69	5	10	15	1.34
35510686--35510759	21	3.6	21	87	7	116	37	10	10	40	1.75
35510697--35510760	19	3.3	19	93	4	101	37	14	9	39	1.78
35511290--35513176	132	14.3	132	90	0	2907	26	23	18	31	1.97
35511378--35511952	44	13.1	44	61	15	114	26	23	17	32	1.96
35512835--35513146	44	7.1	44	64	13	104	26	25	17	30	1.97
35514402--35514448	9	4.9	10	80	15	55	2	17	0	80	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35514396--35514445	15	2.9	17	80	20	59	2	20	0	78	0.86
35514409--35514444	18	1.9	19	94	5	65	0	19	0	80	0.71
35518811--35518915	51	2.0	51	81	5	122	55	6	6	31	1.52
35519184--35519225	15	2.9	14	86	10	50	64	0	0	35	0.94
35519649--35519695	23	2.0	24	87	4	69	38	12	6	42	1.69
35519672--35519728	21	2.7	21	94	0	105	36	10	10	42	1.74
35519794--35520198	43	9.4	43	78	8	326	27	26	18	27	1.98
35520536--35520606	21	3.4	21	84	0	79	5	39	16	38	1.73
35525857--35526132	9	31.8	9	71	15	206	31	2	19	46	1.64
35525846--35526132	25	11.1	25	74	12	208	31	2	19	46	1.63
35525861--35526103	34	7.4	32	74	16	164	31	2	19	46	1.63
35525965--35526003	19	2.1	19	85	9	53	30	0	17	51	1.46
35525888--35526076	43	4.4	43	78	7	170	32	2	19	46	1.62
35526206--35526260	16	3.7	16	69	18	55	34	1	18	45	1.60
35526464--35526628	13	12.5	13	70	7	109	44	3	11	40	1.58
35526482--35526572	23	3.7	23	70	18	65	46	5	9	38	1.61
35526455--35526604	53	2.8	53	91	0	246	43	3	12	41	1.58
35526662--35526705	21	2.0	22	91	4	72	43	4	11	40	1.61
35526709--35526733	13	1.9	13	100	0	50	56	0	0	44	0.99
35526754--35526802	18	2.5	19	80	12	55	59	0	8	32	1.27
35529193--35529488	83	3.5	80	76	9	238	33	19	17	30	1.95
35530914--35531296	41	9.4	41	85	2	441	30	25	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35530914--35531275	122	3.0	122	87	2	492	29	26	20	22	1.99
35530914--35531296	163	2.3	162	82	5	448	30	25	20	22	1.99
35532530--35532652	43	2.9	43	83	11	146	21	20	26	31	1.98
35535638--35535671	16	2.1	17	88	5	52	44	0	11	44	1.40
35537109--35537147	18	2.1	19	85	4	53	23	20	12	43	1.86
35549222--35549419	45	4.4	45	77	4	170	34	18	21	25	1.96
35549477--35549781	41	6.9	43	71	13	145	30	21	21	26	1.98
35549478--35549954	181	2.6	181	88	5	669	32	21	20	26	1.97
35549845--35550015	89	1.9	89	84	4	229	30	19	21	28	1.97
35549886--35550014	44	2.9	44	69	7	109	30	17	23	29	1.97
35554824--35554902	22	3.5	22	81	11	81	34	7	2	55	1.42
35554824--35554916	22	4.2	21	78	14	80	32	6	4	56	1.44
35554897--35554971	22	3.5	23	67	18	72	28	1	8	62	1.31
35554895--35554978	41	2.0	41	95	0	150	32	1	7	59	1.32
35559067--35559206	42	3.3	42	76	5	120	29	25	19	26	1.98
35559050--35559206	43	3.7	42	77	4	136	28	26	19	25	1.99
35563420--35563742	77	4.1	78	84	4	409	34	14	12	38	1.84
35563420--35563730	155	2.0	157	88	3	466	33	14	12	39	1.84
35563739--35563984	85	2.9	84	85	5	329	30	10	11	46	1.74
35563741--35564021	85	3.4	83	80	7	311	32	9	12	46	1.73
35570353--35570398	22	2.0	22	83	4	56	41	28	0	30	1.56
35573903--35573948	10	4.6	10	78	10	58	76	2	21	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35574017--35574046	14	2.1	14	93	0	51	76	0	16	6	0.99
35574044--35574082	20	2.0	19	95	5	69	20	0	7	71	1.10
35574258--35574293	16	2.2	16	90	0	54	83	5	2	8	0.89
35574274--35575782	314	4.8	311	89	4	2186	54	8	8	28	1.60
35574274--35575782	159	9.6	156	90	5	2219	54	8	8	28	1.60
35578021--35578059	8	5.0	8	90	6	62	51	25	0	23	1.49
35578081--35578122	8	5.4	8	80	5	50	50	23	0	26	1.50
35579569--35579632	32	2.0	32	100	0	128	28	37	18	15	1.92
35580110--35580172	29	2.2	29	94	0	108	30	25	12	31	1.93
35581755--35581794	3	13.3	3	100	0	80	32	0	0	67	0.91
35582234--35582322	25	3.4	25	66	14	70	30	3	7	58	1.43
35582221--35582330	55	2.0	55	98	0	211	30	3	8	58	1.45
35584229--35584353	40	3.2	39	72	15	125	49	10	7	32	1.64
35584203--35584303	40	2.7	37	77	16	109	51	7	6	33	1.58
35584611--35584664	21	2.4	21	84	9	63	5	27	0	66	1.13
35584677--35584714	3	12.7	3	88	0	58	0	60	0	39	0.97
35584776--35584872	40	2.4	41	86	3	135	38	19	20	21	1.94
35585328--35585374	14	3.3	15	82	8	62	27	0	31	40	1.57
35585361--35585416	21	2.6	21	83	8	60	21	0	41	37	1.53
35585391--35585456	15	4.5	15	78	14	59	24	1	40	33	1.64
35585376--35585467	22	4.2	22	66	19	50	22	2	41	33	1.66
35585393--35585441	14	3.5	13	81	13	53	24	2	42	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35585691--35585735	21	2.1	21	87	0	63	24	2	42	31	1.67
35585984--35586069	23	3.6	24	76	14	97	52	1	4	41	1.30
35591231--35591280	21	2.4	22	78	18	61	60	4	4	32	1.34
35591600--35591638	19	2.1	19	85	9	53	64	0	2	33	1.08
35595259--35595283	13	1.9	13	100	0	50	40	24	4	32	1.73
35598186--35598239	23	2.2	24	75	15	58	48	11	25	14	1.77
35598229--35598267	20	2.0	20	84	0	51	58	15	17	7	1.59
35598562--35599010	94	4.8	93	72	13	321	42	6	15	35	1.72
35598571--35598776	95	2.2	95	83	7	262	40	8	15	35	1.77
35598758--35598802	24	2.0	23	86	8	65	42	2	11	44	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173