genome.fa.s17.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  155  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46712070--46712102	11	3.1	11	82	8	50	6	12	6	75	1.16
46717797--46717840	21	2.1	21	100	0	88	25	31	11	31	1.91
46718225--46718258	16	2.1	16	88	0	50	44	20	14	20	1.87
46727178--46727248	24	2.8	24	71	14	63	57	0	1	40	1.07
46731882--46731918	17	2.2	17	90	4	58	32	0	5	62	1.18
46736324--46736359	16	2.2	16	90	0	54	77	0	0	22	0.76
46746047--46746079	16	2.0	17	88	5	50	54	0	0	45	0.99
46748697--46748754	30	1.9	30	89	0	89	41	3	24	31	1.71
46748965--46748996	13	2.5	13	94	0	55	31	0	12	56	1.37
46749091--46749332	50	4.7	50	86	4	297	26	24	29	19	1.99
46749091--46749340	100	2.4	103	88	6	364	26	24	29	20	1.99
46752865--46752928	29	2.2	29	81	10	78	18	15	6	59	1.57
46752940--46753008	3	23.3	3	73	8	61	31	2	4	60	1.31
46757643--46757680	19	2.1	18	85	14	51	39	0	5	55	1.23
46758019--46758053	6	5.7	6	96	3	61	0	31	0	68	0.90
46761107--46761200	46	2.0	46	100	0	188	19	6	17	57	1.60
46765732--46765763	2	16.0	2	93	0	55	0	53	0	46	1.00
46771976--46772053	41	1.9	41	86	5	113	58	3	0	37	1.16
46772015--46772048	17	2.0	17	88	11	52	70	2	0	26	1.01
46772755--46772812	20	2.8	20	77	12	64	62	8	6	22	1.48
46775172--46775333	43	3.8	43	85	1	218	27	29	18	24	1.98
46776166--46776233	27	2.6	27	81	9	70	26	13	44	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46776281--46776312	14	2.3	14	94	0	55	15	6	43	34	1.72
46778079--46778135	30	1.9	30	92	0	96	33	0	21	45	1.52
46778057--46778129	14	5.3	14	71	9	53	26	1	26	46	1.61
46778089--46778133	22	2.0	23	86	4	65	33	0	20	46	1.51
46785290--46785343	9	6.0	9	76	8	56	51	5	9	33	1.57
46785285--46785332	18	2.7	17	87	6	69	56	6	6	31	1.49
46785418--46785444	4	6.8	4	100	0	54	77	0	0	22	0.76
46786852--46786956	44	2.4	44	79	4	113	29	22	20	26	1.99
46786875--46786969	44	2.1	45	84	5	122	29	22	17	30	1.97
46786986--46787983	132	7.6	132	89	1	1446	27	24	18	29	1.98
46787151--46787482	44	7.5	44	65	17	161	27	26	18	27	1.98
46788485--46788509	12	2.1	12	100	0	50	36	8	32	24	1.84
46790932--46790991	9	6.7	9	80	0	57	58	5	5	31	1.41
46790924--46790991	18	3.8	18	80	1	66	60	4	4	30	1.36
46790934--46790999	24	2.8	24	86	4	80	56	4	7	31	1.48
46790932--46790991	6	10.0	6	75	0	57	58	5	5	31	1.41
46790953--46790999	9	5.2	9	84	0	58	55	2	8	34	1.42
46795055--46795129	34	2.2	34	83	4	89	36	13	13	37	1.84
46795262--46795370	45	2.4	45	82	1	119	25	20	21	33	1.97
46795304--46795436	46	3.0	45	78	7	119	27	22	20	29	1.98
46796422--46796464	19	2.3	18	80	7	50	34	0	6	58	1.25
46800164--46800190	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46802357--46802488	45	3.0	44	77	11	108	41	14	18	25	1.88
46804788--46804813	13	2.0	13	100	0	52	46	0	46	7	1.31
46808203--46808239	9	4.1	9	92	0	65	24	21	2	51	1.61
46810620--46810660	21	2.0	21	90	0	64	75	0	24	0	0.80
46810620--46810660	11	3.8	11	83	6	57	75	0	24	0	0.80
46810779--46810813	3	11.7	3	87	0	52	31	0	5	62	1.18
46813736--46813827	18	4.6	19	75	17	80	1	27	1	70	1.01
46813768--46813828	14	4.4	14	83	8	72	0	27	0	72	0.85
46813732--46813828	38	2.4	41	84	6	128	1	27	1	70	1.01
46813763--46813820	28	2.1	28	93	6	100	0	27	0	72	0.85
46813788--46813844	24	2.3	24	79	11	62	0	36	0	63	0.95
46815220--46815283	10	6.5	10	72	15	53	60	0	3	35	1.12
46815223--46815252	8	3.6	8	91	8	51	73	0	0	26	0.84
46815160--46815487	165	2.0	161	97	2	611	44	5	8	40	1.59
46815385--46815448	10	6.5	10	72	15	53	60	0	3	35	1.12
46815388--46815417	8	3.6	8	91	8	51	73	0	0	26	0.84
46815758--46815796	20	2.0	20	90	10	62	53	2	0	43	1.14
46817452--46817478	7	3.9	7	100	0	54	25	0	44	29	1.54
46818618--46818669	23	2.3	23	82	0	68	50	0	3	46	1.20
46823657--46824302	131	4.9	130	83	2	783	31	16	13	39	1.87
46826520--46826597	25	3.1	25	70	7	68	35	17	23	23	1.95
46826614--46826718	24	4.3	24	68	14	72	34	20	25	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46830502--46830654	74	2.1	75	90	3	238	44	10	5	39	1.63
46833911--46833981	34	2.1	34	100	0	142	45	16	22	15	1.85
46836238--46836281	23	1.9	23	85	0	61	47	4	6	40	1.50
46841852--46842480	44	14.3	44	74	7	528	30	26	16	26	1.97
46841870--46842485	132	4.7	132	93	0	984	30	26	16	26	1.97
46841841--46842243	219	1.8	219	82	4	526	29	27	16	27	1.97
46841870--46842480	263	2.3	264	91	0	983	29	26	16	27	1.97
46856217--46856269	23	2.4	22	76	20	56	9	18	1	69	1.25
46858760--46859902	615	1.8	623	87	3	1689	34	15	16	33	1.91
46860695--46860742	20	2.5	20	82	3	53	45	6	4	43	1.48
46864374--46864420	4	11.2	4	78	17	51	68	0	0	31	0.90
46867820--46867875	15	3.8	15	83	4	69	30	17	1	50	1.57
46868855--46868879	8	3.1	8	100	0	50	48	0	0	52	1.00
46875066--46875221	24	6.8	23	69	10	95	43	19	12	25	1.85
46875030--46875221	24	8.3	23	69	11	79	43	19	10	26	1.83
46874976--46875237	69	3.8	69	90	1	371	41	19	12	26	1.86
46875838--46876024	41	4.6	41	87	2	259	32	26	20	20	1.97
46877280--46877304	13	1.9	13	100	0	50	48	16	0	36	1.46
46879283--46879543	24	11.3	23	68	8	125	44	19	9	26	1.82
46879283--46879559	69	4.0	69	91	0	419	44	19	10	25	1.82
46880368--46880606	41	5.8	41	91	0	343	31	27	20	20	1.97
46882463--46882541	38	2.1	38	97	0	149	25	22	10	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46890230--46890971	88	8.4	88	90	1	1130	27	19	25	26	1.99
46890645--46890876	43	5.3	43	62	11	112	28	21	26	23	1.99
46893370--46893419	26	1.9	26	95	0	91	12	24	34	30	1.91
46893291--46893660	104	3.6	105	90	4	581	19	19	30	30	1.97
46897968--46898011	19	2.1	22	88	12	67	50	2	0	47	1.13
46897996--46898051	12	4.8	12	77	14	55	48	0	1	50	1.11
46897957--46898056	27	3.7	27	69	19	82	49	1	1	49	1.14
46898318--46898366	25	2.0	25	100	0	98	53	4	38	4	1.39
46898476--46898519	13	3.5	13	81	6	54	22	0	11	65	1.24
46898589--46898796	40	5.3	40	69	17	134	34	4	11	50	1.59
46898589--46898800	76	2.7	77	76	10	216	33	4	11	50	1.59
46898896--46898924	14	2.0	15	93	6	51	41	10	0	48	1.37
46902657--46902737	26	3.2	26	64	28	64	25	14	25	33	1.95
46902739--46902833	45	2.1	45	88	0	145	27	17	23	31	1.97
46902874--46902920	23	2.0	22	84	15	60	38	0	25	36	1.56
46907187--46908551	155	8.8	157	91	3	2152	29	10	8	52	1.64
46907187--46908551	311	4.4	312	91	3	2158	29	10	8	52	1.64
46908485--46908520	16	2.1	18	90	10	58	22	5	5	66	1.34
46908726--46908780	26	2.1	27	82	3	67	56	9	3	30	1.48
46908887--46909018	5	26.4	5	67	14	58	0	33	0	66	0.92
46908941--46909020	10	8.1	10	78	6	74	0	28	0	71	0.87
46908848--46909026	30	5.9	29	68	18	105	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46908842--46908996	65	2.4	63	92	7	269	0	34	0	65	0.93
46909915--46909978	32	2.0	33	84	9	87	54	12	6	26	1.61
46917721--46917811	38	2.4	38	83	0	110	15	39	25	19	1.91
46923524--46923577	25	2.2	25	82	0	63	18	24	22	35	1.96
46924263--46924301	16	2.4	16	95	0	69	17	12	41	28	1.87
46928199--46928283	37	2.3	37	89	0	134	27	11	21	40	1.88
46930348--46930386	13	3.0	13	85	10	53	7	10	2	79	1.02
46931165--46931199	18	2.0	17	88	5	52	22	0	11	65	1.24
46943717--46944131	87	4.8	87	85	1	555	32	22	21	23	1.98
46943726--46943949	44	5.1	44	62	20	119	32	23	21	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173