genome.fa.s17.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  86  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26880607--26880659	24	2.2	24	100	0	106	30	11	3	54	1.53
26888196--26888244	22	2.2	22	82	13	57	46	8	6	38	1.58
26888203--26888246	22	2.0	21	87	12	63	47	9	4	38	1.56
26894107--26894173	5	13.4	5	100	0	134	40	0	0	59	0.97
26897597--26897622	5	5.2	5	100	0	52	42	19	19	19	1.90
26898234--26898272	20	2.0	20	90	5	62	46	0	30	23	1.53
26898648--26898690	9	4.8	9	97	0	77	25	11	18	44	1.84
26899472--26899527	9	6.2	9	87	8	69	23	8	25	42	1.82
26899688--26899712	12	2.1	12	100	0	50	16	24	36	24	1.94
26903422--26903556	18	8.0	17	70	19	95	40	0	1	57	1.13
26903437--26903576	26	5.5	25	68	20	85	42	0	2	55	1.17
26903450--26903505	15	4.0	15	73	17	57	44	0	0	55	0.99
26903280--26903522	120	2.0	120	98	0	468	42	1	4	51	1.30
26903358--26903541	41	4.6	40	67	23	118	41	1	3	53	1.29
26903813--26903843	9	3.4	9	90	0	53	25	12	22	38	1.90
26903898--26903934	9	4.1	9	92	0	65	45	10	13	29	1.77
26903993--26904055	30	2.1	30	82	11	76	20	50	0	28	1.48
26905215--26905313	47	2.1	47	100	0	198	37	18	10	34	1.84
26905306--26905349	3	14.7	3	100	0	88	65	0	0	34	0.93
26906846--26906874	13	2.2	13	100	0	58	58	6	6	27	1.50
26907206--26907248	23	1.9	23	90	4	70	37	18	6	37	1.78
26911187--26911370	68	2.7	68	82	0	224	36	15	23	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26911698--26911985	68	4.2	68	85	0	351	35	14	22	26	1.93
26910857--26911889	519	2.0	519	94	0	1827	33	11	25	28	1.91
26915930--26915972	23	1.9	23	90	4	70	37	23	6	32	1.82
26917671--26917729	29	2.1	28	84	6	75	33	0	5	61	1.18
26918826--26918851	7	3.7	7	100	0	52	26	0	15	57	1.38
26918847--26918871	7	3.6	7	100	0	50	28	0	16	56	1.41
26918826--26918871	14	3.3	14	85	14	60	28	0	15	56	1.39
26919513--26919555	18	2.4	18	88	0	59	18	27	9	44	1.80
26923254--26923542	125	2.3	125	89	0	443	28	21	19	31	1.97
26926544--26926598	21	2.6	22	88	8	87	25	9	38	27	1.86
26926762--26926895	18	7.9	18	69	17	90	57	1	0	40	1.13
26926789--26926842	24	2.4	22	82	14	65	57	1	1	38	1.20
26926813--26926868	15	4.0	15	73	17	57	55	0	0	44	0.99
26926823--26926885	26	2.5	25	82	10	83	58	1	0	39	1.07
26926818--26927016	59	3.3	58	72	14	199	53	3	1	41	1.24
26926796--26927038	120	2.0	120	97	0	459	51	4	1	43	1.31
26926846--26927038	61	3.2	60	71	12	187	50	4	1	43	1.32
26929935--26929972	6	6.2	6	87	6	58	39	0	60	0	0.97
26929935--26929970	18	2.0	18	100	0	72	38	0	61	0	0.96
26929940--26929981	18	2.3	18	87	0	57	40	0	59	0	0.97
26935435--26935459	8	3.1	8	100	0	50	36	0	24	40	1.55
26940706--26940812	28	3.8	28	85	2	133	22	18	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26940706--26940834	29	4.5	28	86	2	123	21	19	22	36	1.95
26947404--26947495	20	4.6	20	74	5	78	9	26	22	41	1.85
26949979--26950009	14	2.2	14	100	0	62	19	0	29	51	1.47
26953107--26953174	34	2.0	34	85	5	93	20	23	23	32	1.98
26956684--26956740	15	4.0	15	77	13	66	63	29	0	7	1.21
26956678--26956744	27	2.5	26	87	2	98	61	32	0	5	1.20
26959265--26959315	22	2.3	22	90	6	77	19	9	52	17	1.72
26960374--26960416	20	2.1	21	91	4	70	39	37	6	16	1.75
26961696--26961758	26	2.7	22	82	17	90	7	19	17	55	1.66
26961699--26961752	26	2.1	26	100	0	108	7	18	18	55	1.65
26965718--26965757	19	2.1	19	86	9	55	40	17	10	32	1.83
26971781--26971825	22	2.0	22	91	0	72	48	15	2	33	1.57
26975530--26975574	22	2.0	22	91	0	72	48	15	2	33	1.57
26986514--26986618	54	1.9	54	86	0	147	39	14	23	22	1.91
26992524--26992572	13	3.6	13	84	10	71	59	0	0	40	0.98
26992527--26992567	15	2.7	15	88	7	57	58	0	0	41	0.98
26992570--26992667	51	1.9	51	87	4	144	45	3	24	26	1.67
26992629--26992705	11	6.9	11	69	24	54	46	1	25	25	1.60
26992629--26992705	22	3.5	21	78	19	77	46	1	25	25	1.60
26994162--26994224	26	2.4	27	97	2	119	41	11	0	47	1.39
26994273--26994324	27	1.9	27	92	0	86	30	21	28	19	1.97
26994369--26994428	18	3.5	17	86	8	77	70	0	28	1	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26994408--26994572	78	2.2	73	89	5	249	69	0	29	1	0.97
26994360--26994428	4	17.2	4	79	11	79	69	0	28	1	0.97
26994477--26994542	21	3.1	21	72	14	64	69	0	28	1	0.97
26995286--26995341	27	2.1	27	93	0	94	44	12	33	8	1.73
26997018--26997062	18	2.5	18	88	0	72	15	48	6	28	1.70
26997911--26997958	3	16.0	3	91	0	78	64	4	0	31	1.12
26998173--26998275	27	3.8	27	79	2	100	19	32	24	24	1.98
26998173--26998275	54	1.9	54	82	4	127	19	32	24	24	1.98
26998332--26998392	26	2.3	28	88	11	101	52	0	6	40	1.27
27002034--27002096	31	2.0	31	96	0	117	22	19	23	34	1.96
27003797--27003825	3	9.7	3	100	0	58	31	0	0	68	0.89
27003924--27003972	24	2.0	24	96	0	89	46	22	8	22	1.77
27010497--27010550	20	2.7	20	82	0	63	24	20	18	37	1.94
27010497--27010570	30	2.5	30	86	8	98	21	20	18	39	1.93
27010497--27010561	20	3.2	20	71	16	53	23	21	16	38	1.93
27012213--27012277	15	4.6	14	71	17	55	73	6	15	4	1.19
27013585--27013886	27	11.2	26	83	4	300	42	17	20	19	1.90
27013585--27013886	54	5.6	54	86	1	367	42	17	20	19	1.90
27013585--27013886	81	3.7	81	87	1	410	42	17	20	19	1.90
27018197--27018247	22	2.2	22	86	6	66	31	25	21	21	1.98
27027187--27027278	24	3.8	24	80	1	103	26	20	25	28	1.99
27029404--27029446	19	2.3	19	84	8	52	55	6	6	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27039116--27039191	24	3.2	23	81	1	71	44	19	15	19	1.86
27043158--27043242	41	2.1	41	86	0	116	23	22	4	49	1.68
27045213--27045251	14	2.8	14	92	0	60	35	7	23	33	1.83
27045756--27045796	13	2.8	16	82	17	54	43	2	0	53	1.13
27049265--27049297	17	1.9	18	88	11	52	42	9	0	48	1.35
27051849--27052038	51	3.8	50	82	2	220	23	16	27	32	1.96
27051853--27052038	101	1.8	101	86	3	266	23	17	27	32	1.96
27055844--27055926	25	3.3	25	81	0	94	21	26	19	32	1.97
27055894--27055948	25	2.2	25	83	0	65	27	27	20	25	1.99
27057354--27057385	16	2.0	17	88	11	50	68	12	6	12	1.37
27057895--27057934	19	2.1	19	86	9	55	75	0	17	7	1.03
27057895--27057935	20	2.1	19	86	4	55	75	0	17	7	1.02
27058406--27058435	15	1.9	16	93	6	53	80	3	0	16	0.85
27074124--27074177	21	2.6	21	93	0	90	35	5	37	22	1.77
27074413--27074476	21	3.0	21	72	20	53	67	10	0	21	1.21
27078118--27078158	19	2.2	19	95	0	73	34	21	9	34	1.87
27085002--27085051	18	3.0	18	80	13	63	60	0	28	12	1.32
27085004--27085052	15	3.1	15	80	19	55	59	0	28	12	1.34
27090008--27090192	79	2.3	82	82	7	220	25	27	22	24	2.00
27089989--27090192	40	5.1	40	80	8	220	25	27	22	25	2.00
27097776--27098058	50	5.7	50	82	2	167	22	28	21	27	1.99
27097825--27098058	50	4.7	50	83	2	263	22	29	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27107737--27107775	19	2.1	19	100	0	78	35	15	5	43	1.69
27113263--27113318	27	2.1	27	96	0	103	35	12	19	32	1.89
27114808--27114866	27	2.2	27	90	0	91	32	16	20	30	1.95
27127400--27127537	42	3.3	42	86	1	143	29	16	22	31	1.96
27127430--27127537	42	2.6	42	92	0	171	31	13	22	32	1.93
27131732--27131787	28	2.0	28	86	6	78	53	10	7	28	1.62
27139906--27139973	29	2.3	29	85	5	93	27	30	13	27	1.94
27140075--27140153	29	2.7	30	82	13	110	29	30	15	25	1.96
27147068--27147101	17	2.0	17	88	11	52	32	8	5	52	1.56
27169543--27169581	14	2.8	14	88	0	60	38	12	20	28	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173