genome.fa.s17.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  54  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15137403--15137522	60	2.0	60	80	6	136	37	5	16	40	1.71
15140456--15140518	3	20.3	3	75	18	58	63	1	4	30	1.24
15140470--15140519	7	7.3	7	84	11	52	66	0	4	30	1.10
15142229--15142435	44	4.8	44	70	12	167	28	22	19	28	1.98
15142120--15142439	129	2.5	129	90	1	489	30	21	19	29	1.97
15147283--15147435	80	1.9	80	100	0	306	44	6	16	32	1.74
15156637--15156932	53	5.6	51	76	10	226	31	15	23	29	1.95
15156636--15156932	51	5.6	52	78	9	255	31	15	23	29	1.95
15156636--15156932	54	5.6	52	75	9	237	31	15	23	29	1.95
15159161--15159415	127	2.0	127	92	1	422	30	24	18	26	1.98
15160516--15160611	36	2.8	33	69	15	88	11	16	10	61	1.56
15166786--15166870	42	2.0	42	93	2	145	47	9	21	22	1.79
15168156--15168232	38	2.0	38	92	0	127	32	15	14	37	1.88
15171039--15171086	19	2.5	20	89	3	71	54	25	8	12	1.65
15171303--15171374	23	3.1	23	83	0	99	41	13	18	26	1.87
15172156--15172196	17	2.4	17	87	4	55	34	2	17	46	1.61
15172625--15172742	42	2.8	41	81	3	137	23	16	17	42	1.88
15172708--15172813	43	2.5	42	76	13	108	20	16	21	40	1.91
15177014--15177084	31	2.3	31	95	2	126	42	22	1	33	1.63
15179414--15179510	28	3.5	28	71	4	88	47	15	14	22	1.82
15184281--15184354	31	2.4	30	84	6	87	39	12	24	24	1.89
15185266--15185307	22	1.9	22	85	0	57	59	2	2	35	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15190221--15190291	35	2.0	35	100	0	142	26	8	25	39	1.84
15197261--15197292	15	2.1	16	94	5	57	15	6	15	62	1.51
15199682--15199715	3	11.3	3	100	0	68	67	0	0	32	0.91
15209609--15209651	22	2.0	22	85	0	59	13	16	23	46	1.83
15209731--15209939	43	4.8	43	82	2	240	26	25	20	27	1.99
15209731--15209915	87	2.1	87	88	2	273	25	25	20	28	1.99
15209731--15209939	87	2.4	86	84	3	240	26	25	20	27	1.99
15210275--15210365	43	2.1	43	85	2	121	42	9	12	35	1.75
15214602--15214645	22	2.0	22	86	0	61	22	9	18	50	1.75
15218144--15218276	7	18.7	7	69	11	56	45	33	0	20	1.56
15218145--15218276	14	9.3	14	71	12	81	46	32	0	20	1.56
15218145--15218276	22	6.2	21	75	11	81	46	32	0	20	1.56
15218237--15218405	75	2.3	75	92	0	284	47	27	2	21	1.63
15218372--15218405	14	2.4	14	90	0	50	50	35	0	14	1.44
15218575--15218704	41	3.2	41	91	0	197	30	28	16	24	1.97
15234464--15234517	27	2.0	27	96	0	99	24	22	16	37	1.94
15241543--15241581	20	2.0	20	89	0	60	30	5	15	48	1.66
15241548--15241586	20	2.1	19	86	13	55	30	10	15	43	1.80
15244341--15244410	17	4.1	17	74	17	56	51	0	24	24	1.49
15244384--15244413	6	5.2	6	92	8	53	53	0	30	16	1.44
15244347--15244413	11	5.9	11	79	17	59	52	0	26	20	1.47
15244349--15244413	17	3.8	17	75	16	62	52	0	27	20	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15251751--15252308	131	4.3	131	83	0	632	33	15	12	38	1.84
15251751--15252308	262	2.1	262	84	0	740	33	15	12	38	1.84
15253445--15253483	20	2.0	20	94	0	69	30	12	10	46	1.75
15253606--15253630	13	1.9	13	100	0	50	44	8	0	48	1.32
15253688--15253762	39	1.9	39	94	0	132	17	28	28	26	1.98
15260187--15260328	72	2.0	72	81	10	166	52	6	5	35	1.50
15268048--15268075	2	14.0	2	100	0	56	0	50	0	50	1.00
15273940--15273964	2	12.5	2	100	0	50	0	0	48	52	1.00
15278834--15278877	9	4.9	9	78	10	54	54	4	0	40	1.21
15282534--15282622	25	3.6	25	71	7	83	16	26	22	33	1.96
15282650--15282740	25	3.7	24	76	2	83	26	26	15	31	1.96
15286551--15286635	42	2.0	42	93	0	143	41	9	17	31	1.82
15286938--15286974	17	2.2	17	90	9	58	24	0	2	72	0.97
15287045--15287130	31	2.7	32	85	5	111	40	6	2	50	1.42
15287076--15287129	15	3.4	17	65	15	51	38	7	3	50	1.48
15293799--15293891	44	2.1	44	84	9	118	34	3	26	35	1.73
15300501--15300709	92	2.3	91	86	3	276	46	4	3	45	1.39
15300637--15300684	24	1.9	25	87	8	71	47	0	2	50	1.12
15300763--15300973	66	3.4	62	69	21	181	42	2	6	48	1.42
15300725--15301017	120	2.4	120	93	3	493	43	2	4	49	1.36
15300850--15300901	15	3.6	15	80	12	56	44	0	1	53	1.11
15300979--15301020	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15300970--15301011	15	2.9	15	82	10	52	47	0	0	52	1.00
15300954--15301263	157	2.0	157	97	0	584	47	4	3	44	1.39
15301123--15301157	18	2.0	17	88	5	52	45	0	0	54	0.99
15302346--15302390	19	2.3	20	81	11	58	64	2	6	26	1.30
15302652--15302736	10	8.8	10	72	12	61	34	0	2	63	1.07
15302652--15302736	20	4.4	20	76	8	70	34	0	2	63	1.07
15302652--15302722	30	2.4	30	88	4	99	36	0	2	60	1.11
15302652--15302736	9	8.9	9	73	15	64	34	0	2	63	1.07
15304131--15304179	16	3.1	15	82	11	53	61	6	4	28	1.38
15306219--15306255	18	2.0	19	94	5	67	5	0	27	67	1.12
15306806--15306846	21	2.0	21	90	0	64	21	26	19	31	1.97
15315644--15315677	17	2.0	17	88	0	50	29	17	8	44	1.79
15317668--15317810	33	4.3	32	73	8	106	29	23	15	32	1.95
15321956--15321999	20	2.2	20	84	4	54	50	6	22	20	1.72
15327780--15327820	21	2.0	21	95	0	73	36	19	24	19	1.95
15330354--15330409	19	3.0	19	84	2	60	39	1	5	53	1.34
15332143--15332190	17	2.9	16	76	14	53	18	8	8	64	1.46
15335994--15336177	66	2.8	66	84	5	228	30	17	24	26	1.97
15335948--15336192	66	3.7	66	80	4	226	29	18	24	26	1.98
15352696--15352747	24	2.2	24	85	0	68	55	5	3	34	1.42
15356615--15356692	30	2.5	33	75	12	90	20	7	19	52	1.70
15359874--15360013	32	4.5	31	83	12	148	28	2	16	52	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15359866--15360013	59	2.4	62	81	10	164	28	2	16	52	1.57
15361221--15361292	36	2.0	36	84	10	94	54	8	4	33	1.50
15362952--15363161	68	3.0	69	85	4	264	44	19	9	26	1.81
15363969--15364125	41	3.8	41	87	0	215	33	28	19	17	1.95
15385196--15385231	15	2.5	15	95	4	65	19	0	0	80	0.71
15386224--15386252	8	3.6	8	100	0	58	13	0	51	34	1.42
15386363--15386409	25	1.9	24	82	4	58	38	0	31	29	1.58
15391424--15391479	28	2.0	28	100	0	112	42	10	10	35	1.74
15395771--15395848	30	2.6	29	76	11	79	46	3	24	25	1.70
15414669--15414706	18	2.1	18	100	0	76	26	23	28	21	1.99
15415568--15415621	15	3.8	15	76	14	60	57	3	0	38	1.17
15415557--15415610	27	2.0	27	89	7	83	59	1	0	38	1.08
15415563--15415627	28	2.3	28	81	5	78	58	3	0	38	1.14
15419490--15419586	42	2.3	43	81	1	115	27	17	23	30	1.97
15419445--15419603	43	3.7	43	76	9	146	23	17	27	31	1.97
15420525--15420552	13	2.2	13	100	0	56	35	0	17	46	1.49
15421467--15421497	16	1.9	16	100	0	62	58	19	22	0	1.40
15423942--15423980	7	5.7	7	93	3	62	30	30	10	28	1.90
15425623--15425657	7	5.1	7	96	3	63	57	11	0	31	1.34
15428435--15428462	6	4.7	6	100	0	56	32	17	0	50	1.47
15430752--15430780	14	2.1	14	93	6	51	13	3	0	82	0.79
15435485--15435564	31	2.5	32	84	9	94	38	13	0	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15447222--15447329	24	4.4	25	69	19	75	20	25	16	37	1.93
15447209--15447329	48	2.5	50	75	18	128	19	24	18	37	1.94
15447209--15447328	25	5.0	24	68	23	74	19	25	18	37	1.94
15452981--15453076	9	10.2	9	78	5	93	39	1	4	55	1.26
15452981--15453072	19	4.9	18	80	9	103	39	1	4	55	1.27
15452971--15453077	5	22.4	5	75	13	66	39	0	3	56	1.24
15456207--15456263	29	1.9	30	85	3	80	22	22	7	47	1.75
15458144--15458206	31	2.0	31	100	0	126	34	9	9	46	1.69
15465459--15465534	36	2.1	36	95	0	134	26	6	31	35	1.82
15480466--15480509	23	1.9	23	86	9	63	11	22	0	65	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173