genome.fa.s17.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  142  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43117722--43117777	19	2.9	19	71	12	51	30	3	3	62	1.29
43119139--43119554	204	2.1	199	89	5	622	36	17	12	33	1.87
43121744--43121773	2	15.0	2	100	0	60	50	0	50	0	1.00
43123613--43123667	28	2.0	26	86	6	74	36	20	5	38	1.75
43128420--43128509	26	3.3	26	67	17	74	42	14	5	37	1.69
43128420--43128527	56	1.9	55	94	1	189	40	13	7	37	1.73
43131085--43131139	24	2.3	24	96	0	101	32	7	30	29	1.84
43132111--43132219	56	2.0	55	92	1	182	40	8	11	40	1.70
43133991--43134552	126	4.5	125	82	5	652	29	16	22	31	1.96
43134010--43134553	251	2.2	250	84	3	709	29	17	22	31	1.96
43137722--43138634	21	42.0	22	77	8	816	24	1	30	43	1.62
43137722--43138634	43	21.0	42	77	11	772	24	1	30	43	1.62
43137722--43138634	129	7.0	129	85	3	1086	24	1	30	43	1.62
43139830--43139960	7	18.7	7	100	0	262	57	14	0	28	1.38
43140129--43140166	20	1.9	20	84	10	51	55	7	2	34	1.43
43141178--43141239	11	5.6	11	88	3	90	45	1	32	20	1.61
43141105--43141202	51	1.9	51	83	4	126	46	2	24	26	1.63
43141166--43141240	22	3.4	21	82	14	89	45	1	30	22	1.61
43141164--43141240	33	2.3	33	84	10	111	45	1	29	23	1.61
43143465--43143632	48	3.6	48	68	16	120	37	14	8	39	1.77
43143459--43143695	93	2.5	93	86	6	300	36	14	9	39	1.79
43145379--43146002	23	26.8	22	69	16	268	42	18	12	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43145371--43146032	93	7.1	93	91	0	1072	42	18	12	26	1.86
43145379--43146032	187	3.5	187	95	0	1139	42	18	12	25	1.86
43146771--43146936	28	6.0	28	84	0	181	33	25	10	29	1.90
43146771--43146936	56	3.0	56	82	0	208	33	25	10	29	1.90
43147520--43147602	40	2.1	40	97	0	157	44	14	8	32	1.75
43147929--43148094	28	6.0	28	84	0	181	33	25	10	29	1.90
43147929--43148094	56	3.0	56	82	0	208	33	25	10	29	1.90
43148678--43148760	40	2.1	40	97	0	157	44	14	8	32	1.75
43158386--43158442	28	2.0	28	100	0	114	31	10	17	40	1.84
43160919--43161179	41	6.4	41	75	6	215	15	22	21	39	1.91
43160918--43161201	82	3.5	81	80	3	309	16	22	21	39	1.92
43160917--43161181	123	2.2	123	77	3	275	16	22	21	39	1.92
43163475--43163512	10	3.8	10	92	0	67	44	0	13	42	1.43
43163475--43163512	20	1.9	20	100	0	76	44	0	13	42	1.43
43163580--43163631	27	1.9	27	88	0	77	40	0	9	50	1.35
43165546--43165634	34	2.6	34	81	10	110	14	15	25	43	1.85
43173982--43174337	71	5.0	71	83	4	421	25	17	26	31	1.97
43176332--43176383	16	3.2	16	88	0	59	30	0	32	36	1.58
43176342--43176385	16	2.8	16	89	0	61	31	0	34	34	1.58
43176599--43176640	15	2.7	16	82	14	52	52	2	0	45	1.13
43176608--43176649	15	2.9	15	82	10	52	52	0	0	47	1.00
43176712--43176909	105	1.8	108	76	9	199	48	2	3	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43176790--43176961	91	1.8	91	91	4	281	47	2	2	47	1.30
43176828--43176962	44	3.0	43	71	15	121	49	2	2	45	1.26
43177958--43177993	17	2.1	17	100	0	72	41	16	0	41	1.48
43179764--43179821	27	2.1	27	90	0	89	22	3	31	43	1.70
43184974--43185014	18	2.2	19	87	12	59	41	4	0	53	1.22
43186468--43186499	14	2.1	16	88	11	50	43	0	3	53	1.16
43191709--43191735	12	2.2	12	100	0	54	74	0	25	0	0.83
43191951--43192026	37	2.0	38	84	5	100	31	2	43	22	1.67
43193206--43193269	22	3.1	21	80	6	60	14	25	15	45	1.83
43198558--43198612	21	2.6	21	85	8	76	10	23	18	47	1.80
43199395--43199420	3	8.7	3	100	0	52	69	0	0	30	0.89
43199826--43199873	20	2.4	20	85	0	69	70	14	14	0	1.16
43205417--43205477	31	2.0	31	100	0	122	34	9	13	42	1.77
43208754--43209100	189	1.8	189	86	2	500	38	19	24	18	1.93
43213615--43213655	21	2.0	21	90	0	64	19	29	21	29	1.98
43223207--43223238	16	1.9	17	93	6	57	56	3	0	40	1.15
43255689--43256054	25	14.6	25	74	6	222	25	13	23	36	1.92
43255709--43256058	50	7.0	50	78	5	303	26	13	23	36	1.92
43259731--43259771	21	1.9	22	85	5	57	31	17	21	29	1.96
43264962--43265042	28	2.9	27	90	5	126	30	25	20	22	1.98
43265363--43265391	15	1.9	15	100	0	58	37	27	13	20	1.91
43265429--43265823	27	14.7	27	82	4	422	17	18	21	43	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43277537--43277641	51	2.2	46	86	8	138	53	9	4	32	1.54
43278771--43278809	20	1.9	21	84	5	53	38	17	23	20	1.93
43289808--43289836	15	1.9	15	100	0	58	24	13	27	34	1.93
43295071--43295111	3	13.7	3	100	0	82	65	0	0	34	0.93
43299136--43299187	25	2.1	25	92	0	86	44	23	7	25	1.79
43308182--43308578	109	3.7	109	92	0	625	34	19	15	30	1.92
43308707--43308799	4	22.8	4	75	12	82	70	4	4	20	1.21
43308708--43308799	43	2.3	39	83	11	105	70	4	4	20	1.22
43308707--43308830	39	3.3	37	75	13	112	70	4	5	20	1.25
43309161--43309192	12	2.7	12	100	0	64	59	0	6	34	1.23
43310975--43311741	44	17.7	44	70	14	250	27	21	19	30	1.98
43310956--43311223	129	2.1	129	96	0	491	29	20	19	30	1.97
43311068--43311810	210	3.4	217	89	3	1097	27	21	19	30	1.98
43311413--43311785	44	8.6	43	71	12	181	28	21	20	28	1.98
43311791--43313617	87	21.0	87	87	1	2322	25	22	22	29	1.99
43312006--43312130	44	2.8	44	67	12	112	25	24	24	25	2.00
43312034--43312172	44	3.2	43	70	11	120	28	25	23	21	1.99
43314852--43314887	6	5.7	6	87	12	54	16	16	0	66	1.25
43314852--43314887	13	2.8	12	88	12	54	16	16	0	66	1.25
43314842--43314888	13	3.5	13	77	13	51	17	17	0	65	1.27
43315865--43315917	6	8.7	6	85	4	61	15	5	9	69	1.33
43315865--43315923	12	4.8	12	79	4	64	13	6	8	71	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43315819--43315951	69	1.9	69	83	8	173	11	13	8	66	1.43
43319284--43319680	109	3.7	109	92	0	625	35	18	15	30	1.92
43319814--43319902	4	21.8	4	74	13	74	70	4	4	20	1.22
43319818--43319885	19	3.6	18	75	16	57	69	5	5	19	1.31
43319815--43319902	39	2.4	35	81	12	97	70	4	4	20	1.23
43320193--43320239	18	2.7	18	80	9	53	61	6	2	29	1.32
43320265--43320299	3	11.7	3	87	0	52	60	0	5	34	1.21
43320268--43320299	12	2.7	12	100	0	64	59	0	6	34	1.23
43322131--43322848	44	16.6	44	69	12	215	27	22	19	30	1.98
43322063--43322330	129	2.1	129	94	0	473	30	20	18	30	1.97
43322064--43322461	44	9.2	41	70	13	122	29	21	18	29	1.97
43322171--43322917	218	3.5	217	87	3	1080	27	22	19	30	1.98
43322898--43324289	87	16.0	87	86	1	1790	24	22	23	30	1.99
43329309--43329515	45	4.6	45	75	5	127	29	18	22	28	1.98
43329315--43329552	44	5.4	44	75	6	194	28	18	22	29	1.97
43329611--43329783	44	3.9	44	82	3	168	31	19	23	26	1.98
43329830--43330242	225	1.8	223	83	5	546	33	18	19	27	1.96
43330326--43330622	89	3.3	89	84	1	353	27	20	25	26	1.99
43330590--43330908	44	7.3	44	66	11	116	29	18	25	26	1.98
43330588--43331001	131	3.1	132	86	1	598	29	19	25	25	1.98
43332900--43332933	17	2.0	17	94	0	59	17	32	23	26	1.97
43335487--43335712	9	24.2	9	63	19	54	33	5	1	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43335530--43335629	30	3.5	27	75	14	85	33	6	2	59	1.33
43335550--43335645	28	3.4	27	74	14	79	35	4	1	59	1.24
43335657--43335711	19	2.9	18	73	21	51	38	1	0	60	1.08
43341641--43341678	11	3.5	11	78	7	51	7	5	10	76	1.15
43341642--43341688	21	2.2	21	92	7	78	6	10	8	74	1.22
43342944--43343044	49	2.1	49	83	7	125	38	21	15	23	1.92
43345785--43345871	25	3.5	25	81	7	90	31	18	25	25	1.98
43347377--43347418	2	21.0	2	100	0	84	0	50	0	50	1.00
43353525--43353582	28	2.1	28	90	0	89	32	12	6	48	1.67
43354227--43354292	3	22.0	3	100	0	132	0	33	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173