genome.fa.s17.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  47  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12871486--12871524	20	2.0	19	85	5	51	20	5	35	38	1.75
12881668--12881720	27	2.0	27	85	7	74	41	9	15	33	1.79
12881682--12881745	27	2.4	27	84	5	76	34	14	18	32	1.91
12885415--12885763	38	8.9	38	84	2	245	15	21	28	34	1.94
12885432--12885779	41	8.8	41	83	4	231	16	20	28	34	1.95
12885474--12885778	82	3.8	81	79	6	261	17	20	27	34	1.95
12892546--12892593	24	2.0	24	91	0	78	31	22	25	20	1.98
12892871--12892932	25	2.5	25	82	7	81	29	16	20	33	1.94
12899275--12899348	25	3.0	25	89	0	121	25	24	24	25	2.00
12903322--12903368	24	1.9	24	86	4	67	36	0	38	25	1.56
12904425--12904704	54	5.2	54	84	6	320	43	20	15	20	1.87
12904425--12904706	27	10.4	27	83	4	281	43	20	15	20	1.87
12904424--12904706	81	3.5	81	84	5	358	43	20	15	20	1.87
12910049--12910297	27	9.2	27	79	7	256	44	17	17	20	1.87
12910049--12910297	54	4.6	54	84	5	290	44	17	17	20	1.87
12910049--12910298	81	3.1	81	82	5	290	44	18	17	20	1.87
12926116--12926237	9	12.7	9	71	12	66	63	0	3	32	1.17
12926116--12926178	19	3.4	19	74	10	58	65	1	3	30	1.18
12926135--12926214	29	2.8	28	84	7	97	61	0	2	36	1.10
12926206--12926267	10	6.6	9	75	15	54	64	0	6	29	1.18
12926211--12926268	18	3.2	17	79	13	53	62	0	6	31	1.22
12926230--12926276	20	2.4	20	75	10	53	57	0	8	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12926505--12926541	19	1.9	19	88	0	56	21	5	2	70	1.20
12926535--12926567	9	3.6	9	95	4	57	30	9	0	60	1.27
12926534--12926575	10	4.3	10	87	9	52	28	9	2	59	1.41
12926598--12926635	19	2.0	20	89	5	60	42	0	0	57	0.98
12926792--12927009	88	2.5	88	76	6	233	33	8	18	38	1.81
12927090--12927141	19	2.7	19	75	16	54	32	3	3	59	1.33
12927578--12927747	58	2.9	59	79	9	188	42	14	17	25	1.87
12929197--12929271	29	2.6	29	93	0	123	26	12	18	42	1.85
12933080--12933110	12	2.5	12	94	5	53	70	3	12	12	1.27
12937585--12937610	13	2.0	13	100	0	52	46	7	0	46	1.31
12949149--12949183	17	2.0	18	88	5	54	11	42	31	14	1.81
12955983--12956038	27	2.1	28	83	12	73	28	3	10	57	1.49
12961465--12961562	28	3.6	27	91	4	153	30	26	21	21	1.98
12961932--12962294	27	13.4	27	80	4	304	21	18	19	41	1.91
12961962--12962294	54	6.2	53	81	4	337	21	18	19	41	1.90
12961962--12962294	81	4.1	81	82	3	364	21	18	19	41	1.90
12964756--12964842	28	3.1	28	90	6	140	32	24	21	21	1.98
12964947--12964995	26	1.9	25	91	0	71	36	22	20	20	1.95
12965235--12965561	134	2.4	134	83	6	394	19	17	22	40	1.91
12965254--12965561	107	2.9	107	85	2	404	18	17	22	41	1.90
12965235--12965561	27	12.2	26	80	3	323	19	17	22	40	1.91
12972883--12972933	26	2.0	26	100	0	102	39	23	19	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12972884--12972940	26	2.2	26	93	3	96	42	21	17	19	1.90
12973943--12973970	13	2.2	13	100	0	56	21	14	0	64	1.29
12982346--12982387	18	2.3	18	91	0	66	23	9	26	40	1.85
12984626--12984659	5	6.6	5	93	6	59	0	20	0	79	0.73
12984629--12984659	16	1.9	16	100	0	62	0	22	0	77	0.77
12984667--12984713	24	2.0	24	82	0	58	19	6	10	63	1.47
12985568--12985599	7	4.4	7	96	4	55	53	0	3	43	1.16
12989641--12989734	48	2.0	48	100	0	188	26	19	32	21	1.97
12992050--12992159	57	1.9	57	85	5	150	43	8	20	28	1.80
12996253--12996301	22	2.2	22	96	0	89	30	2	22	44	1.64
12998100--12998147	23	2.0	25	84	8	64	39	20	0	39	1.53
12998352--12998473	23	5.3	23	84	3	165	28	24	22	23	1.99
12998352--12998473	46	2.7	46	90	2	183	28	24	22	23	1.99
13005049--13005114	33	2.0	33	100	0	132	36	24	15	24	1.93
13011662--13011740	31	2.6	30	82	6	79	43	10	10	36	1.72
13013885--13013992	57	1.9	57	86	0	153	35	16	27	20	1.94
13014802--13014857	28	2.0	28	100	0	112	42	17	14	25	1.87
13015205--13015285	9	8.3	9	71	15	63	65	1	1	32	1.08
13015203--13015286	19	4.3	20	75	13	86	64	1	1	33	1.09
13015195--13015285	10	9.2	10	72	14	57	63	1	1	34	1.09
13015195--13015266	30	2.4	30	83	6	92	65	1	1	31	1.10
13015465--13015582	8	13.5	8	76	16	94	25	3	0	71	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13015465--13015583	17	6.8	17	77	13	100	25	3	0	71	1.01
13015465--13015583	33	3.4	32	80	15	112	25	3	0	71	1.01
13015694--13015860	91	1.8	91	84	5	230	36	8	18	36	1.81
13016886--13016929	22	1.9	24	90	9	74	40	11	2	45	1.53
13017468--13017533	26	2.5	25	78	9	69	31	6	1	60	1.30
13021015--13021080	31	2.2	30	91	5	107	71	0	1	27	0.95
13023283--13023332	25	2.0	25	100	0	100	12	16	24	48	1.79
13023801--13023892	29	3.2	27	73	17	78	45	0	3	51	1.17
13023764--13023938	59	3.0	58	84	9	187	44	1	2	50	1.26
13024098--13024148	16	3.2	16	85	0	66	23	27	9	39	1.86
13024484--13024541	23	2.4	24	75	16	66	46	1	3	48	1.29
13024562--13024616	23	2.3	23	96	3	101	52	3	0	43	1.18
13024562--13024625	23	2.8	23	90	4	76	57	3	0	39	1.14
13030767--13030806	6	6.7	6	85	0	53	77	12	0	10	0.99
13030765--13030800	18	1.9	19	94	5	65	77	11	0	11	0.99
13030791--13030857	28	2.4	28	78	14	75	73	7	11	7	1.26
13030866--13030890	6	4.2	6	100	0	50	68	0	16	16	1.22
13031769--13031810	21	2.0	21	86	9	59	71	0	16	11	1.14
13031768--13031807	14	2.9	14	80	0	53	75	0	15	10	1.05
13033046--13033708	88	7.6	88	85	2	838	27	23	25	23	2.00
13033065--13033465	44	9.2	44	67	15	208	25	25	25	23	2.00
13033190--13033591	44	9.2	44	67	10	140	26	24	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13033801--13033890	40	2.2	40	100	0	180	36	18	13	31	1.90
13033881--13034077	44	4.2	45	67	17	134	32	19	20	27	1.97
13033866--13034047	98	1.9	97	80	9	217	31	20	20	27	1.97
13034154--13034419	50	5.3	49	74	4	210	30	22	20	25	1.98
13034152--13034444	100	2.9	99	85	2	381	31	22	20	25	1.98
13037549--13037762	44	4.6	44	79	15	241	28	23	15	31	1.96
13037547--13037755	51	4.3	51	81	12	258	28	23	15	32	1.95
13037549--13037762	95	2.3	94	92	2	358	28	23	15	31	1.96
13039294--13039363	22	3.3	22	62	22	58	12	34	5	47	1.66
13039285--13039382	42	2.3	42	98	0	187	18	28	7	45	1.75
13041865--13041958	30	3.1	30	95	1	161	26	25	6	41	1.79
13041875--13041952	15	5.2	15	70	11	70	26	23	7	42	1.81
13046242--13046267	3	8.7	3	100	0	52	69	0	0	30	0.89
13049884--13049948	32	2.1	32	97	2	123	30	9	12	47	1.72
13050494--13050588	18	4.7	19	75	15	84	74	10	13	1	1.12
13050494--13050533	9	4.3	9	96	3	71	80	10	10	0	0.92
13050551--13050649	12	8.4	12	75	4	94	73	11	14	1	1.14
13050494--13050588	10	9.4	10	73	13	79	74	10	13	1	1.12
13050498--13050651	58	2.6	57	84	12	195	71	11	16	1	1.20
13055180--13055244	32	2.1	32	97	2	123	30	9	12	47	1.72
13057432--13057482	21	2.4	21	86	0	66	21	35	7	35	1.83
13067813--13067845	14	2.4	14	85	14	50	57	6	6	30	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13071749--13071808	30	2.0	31	90	3	95	20	38	0	41	1.52
13072555--13072582	5	5.6	5	100	0	56	21	17	21	39	1.93
13087767--13087836	25	2.8	25	91	0	104	25	24	14	35	1.93
13087819--13087856	19	2.0	19	89	0	58	23	26	15	34	1.95
13087850--13087936	22	3.8	22	83	4	84	17	25	18	39	1.92
13101709--13101769	30	2.0	30	96	0	113	42	27	0	29	1.56
13115437--13115492	24	2.3	25	81	9	80	28	12	50	8	1.70
13119183--13119225	7	6.3	7	89	2	61	60	0	37	2	1.10
13125829--13125867	15	2.4	17	87	8	55	74	2	10	12	1.17
13128145--13128215	26	2.8	26	82	2	81	38	16	7	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173