genome.fa.s17.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  55  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15485701--15485737	18	2.1	18	100	0	74	29	27	16	27	1.97
15486531--15486677	72	2.1	71	93	1	249	28	13	16	41	1.86
15490366--15490390	13	1.9	13	100	0	50	8	0	24	68	1.16
15492317--15492420	41	2.5	41	86	9	149	28	21	28	21	1.98
15510214--15510499	44	6.6	43	68	13	147	27	25	20	26	1.99
15511643--15511684	21	2.0	22	90	4	68	16	14	0	69	1.20
15524177--15524205	15	1.9	15	100	0	58	6	31	27	34	1.83
15532250--15532274	2	12.5	2	100	0	50	48	52	0	0	1.00
15532274--15532312	2	19.5	2	100	0	78	0	51	0	48	1.00
15541845--15541875	6	5.2	6	100	0	62	67	0	16	16	1.23
15542894--15542932	20	2.0	20	85	10	53	0	53	0	46	1.00
15544471--15544583	56	2.0	56	98	0	217	22	13	15	48	1.80
15545182--15545253	33	2.2	32	82	7	83	50	13	5	30	1.65
15547708--15547734	14	1.9	14	100	0	54	59	3	0	37	1.15
15548654--15548686	17	1.9	17	88	11	50	78	9	12	0	0.95
15549521--15549703	50	3.7	50	79	2	197	25	18	21	34	1.96
15549519--15549733	100	2.1	100	85	0	295	25	19	21	33	1.97
15550141--15550396	129	2.0	129	92	0	431	25	22	19	33	1.97
15551611--15551654	7	6.1	7	82	12	54	11	15	0	72	1.11
15552504--15552549	8	5.2	9	82	10	51	2	21	0	76	0.90
15552504--15552549	18	2.6	17	83	6	56	2	21	0	76	0.90
15560892--15560930	18	2.2	17	86	13	53	33	0	20	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15561049--15561077	8	3.6	8	100	0	58	24	13	27	34	1.93
15561164--15561236	23	3.2	23	92	0	128	26	21	23	28	1.99
15594936--15595665	44	16.9	42	68	14	245	28	20	23	27	1.99
15594935--15595740	216	3.7	216	91	1	1251	28	20	23	27	1.99
15596001--15596028	14	2.0	14	100	0	56	50	28	14	7	1.69
15608254--15608328	31	2.4	31	97	0	141	37	2	4	56	1.32
15608278--15608328	16	3.2	16	75	25	63	37	1	1	58	1.20
15615444--15615480	18	2.1	18	89	0	56	83	16	0	0	0.64
15618393--15618444	21	2.5	20	72	9	50	38	0	0	61	0.96
15621317--15621350	17	2.0	17	94	0	59	44	50	0	5	1.26
15625867--15625900	17	2.0	17	94	0	59	44	50	0	5	1.26
15626129--15626282	50	3.0	49	85	4	182	25	18	17	38	1.92
15626053--15626360	54	5.8	54	73	11	183	27	20	14	37	1.92
15626053--15626337	104	2.7	104	76	10	276	27	20	14	37	1.92
15626675--15626975	24	12.5	24	74	4	212	25	19	13	40	1.89
15626649--15626809	48	3.3	48	81	1	187	24	16	14	44	1.86
15626680--15626852	49	3.6	48	79	3	134	24	19	13	42	1.87
15630157--15630238	38	2.1	39	86	2	112	29	10	8	51	1.67
15635327--15635368	13	2.9	14	80	13	50	54	0	0	45	0.99
15635331--15635367	16	2.3	16	86	13	58	59	0	0	40	0.97
15635476--15635533	29	2.0	29	82	3	71	25	13	8	51	1.70
15647353--15647402	24	2.1	24	92	3	84	44	8	2	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15647523--15647597	21	3.8	21	75	20	63	61	2	5	30	1.32
15647765--15647871	9	11.4	9	70	13	65	32	0	0	65	1.05
15647764--15647848	30	2.9	29	83	10	109	36	1	0	62	1.03
15649027--15649083	28	2.0	28	82	0	69	33	0	0	66	0.92
15649795--15649842	22	2.2	22	92	0	78	66	0	0	33	0.92
15656190--15656271	22	3.6	22	84	11	69	39	23	1	36	1.63
15656202--15656271	22	3.2	21	84	13	88	34	25	1	38	1.65
15656238--15656283	10	4.6	10	75	20	51	34	26	0	39	1.57
15656211--15656272	22	2.8	23	90	4	92	35	24	1	38	1.65
15656243--15656301	30	2.0	30	89	0	91	32	32	0	35	1.58
15656273--15656326	22	2.5	22	82	8	67	33	33	0	33	1.58
15656358--15656419	28	2.2	28	80	11	74	37	0	1	61	1.06
15656492--15656521	7	4.4	7	95	4	53	43	0	0	56	0.99
15656517--15656550	15	2.3	15	90	5	52	26	0	5	67	1.13
15661334--15661370	3	12.3	3	100	0	74	32	0	0	67	0.91
15661560--15661615	27	2.1	27	100	0	112	42	25	3	28	1.71
15663139--15663183	15	3.0	14	81	12	54	31	13	0	55	1.38
15669645--15669726	35	2.3	36	89	2	121	42	32	12	12	1.79
15670423--15670465	22	2.0	22	86	8	63	53	16	2	27	1.55
15670775--15670819	23	2.0	23	81	0	54	35	17	2	44	1.62
15677789--15677831	18	2.4	18	84	0	50	30	27	13	27	1.95
15677800--15677868	27	2.6	27	85	0	93	31	26	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15677826--15677867	18	2.3	18	88	8	59	30	30	14	23	1.94
15679206--15679241	17	2.1	17	94	0	63	50	5	0	44	1.25
15692845--15693107	117	2.2	121	79	6	288	39	15	12	32	1.85
15692843--15693122	58	4.8	58	80	6	296	39	14	13	32	1.85
15693199--15693817	70	8.8	70	79	4	604	30	17	21	30	1.96
15696402--15696557	70	2.2	70	89	2	242	30	19	22	28	1.98
15699255--15699301	19	2.5	19	79	6	51	61	4	4	29	1.34
15699502--15699540	18	2.2	18	86	9	53	43	0	0	56	0.99
15699502--15699541	17	2.3	17	86	4	53	45	0	0	55	0.99
15707254--15707366	56	2.0	56	100	0	226	22	15	12	49	1.78
15711922--15711962	10	4.4	10	84	9	52	41	0	0	58	0.98
15713894--15713943	24	2.1	24	84	0	64	42	8	38	12	1.71
15717270--15717353	23	3.8	23	78	7	93	39	22	20	17	1.92
15718342--15718380	9	4.3	9	84	12	53	23	7	0	69	1.14
15722740--15722864	62	2.1	57	83	7	160	40	3	4	52	1.39
15728794--15728858	29	2.2	29	97	0	121	26	23	26	24	2.00
15733898--15733964	4	16.8	4	96	0	116	47	0	26	25	1.52
15736366--15736464	50	2.0	50	92	4	164	25	19	11	44	1.83
15737499--15737529	5	6.2	5	92	0	53	41	3	0	54	1.16
15737576--15737611	17	2.2	17	90	5	56	77	5	16	0	0.94
15738543--15738599	22	2.6	22	83	8	80	15	21	17	45	1.85
15746612--15746696	42	2.0	42	90	0	134	48	17	5	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15749167--15749237	35	2.0	35	100	0	142	39	8	9	42	1.69
15750727--15750908	88	2.1	89	97	1	348	31	14	35	19	1.91
15759034--15759082	26	1.9	25	84	12	64	14	14	10	61	1.57
15759504--15760457	44	21.5	44	78	4	787	29	15	25	29	1.96
15759504--15760457	88	10.8	89	79	5	896	29	15	25	29	1.96
15759436--15760359	132	7.0	133	84	4	930	29	15	25	29	1.96
15768873--15768959	42	2.1	42	84	0	111	28	10	12	48	1.74
15774284--15774401	39	3.0	39	74	0	119	41	22	5	29	1.78
15790031--15790074	22	2.0	22	95	0	79	43	15	13	27	1.85
15793462--15793493	16	2.0	16	93	0	55	18	3	6	71	1.20
15798509--15798543	16	2.3	15	90	9	54	85	2	0	11	0.69
15806441--15806469	10	3.0	10	95	5	51	68	0	0	31	0.89
15806883--15806919	5	7.2	5	96	3	65	56	0	0	43	0.99
15807194--15807241	25	1.9	25	83	8	62	41	10	8	39	1.69
15807577--15807683	43	2.5	43	84	3	135	37	24	19	18	1.94
15813356--15813463	51	2.1	51	85	0	144	49	4	15	30	1.65
15814568--15814608	20	2.0	20	85	0	55	43	14	0	41	1.45
15816242--15816320	39	2.0	39	95	0	140	53	21	8	16	1.70
15820310--15820339	8	3.8	8	95	0	51	33	0	0	66	0.92
15820774--15820802	13	2.1	14	93	6	51	6	17	3	72	1.21
15820876--15820929	27	2.0	27	85	7	74	29	14	29	25	1.95
15820855--15821041	94	2.0	94	89	0	284	33	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15820860--15821065	94	2.2	94	84	0	268	35	17	23	23	1.95
15820883--15821093	94	2.2	94	82	0	251	34	17	24	23	1.96
15828177--15829279	74	15.0	74	89	2	1643	37	27	8	26	1.86
15830886--15830922	16	2.2	18	85	9	51	59	5	29	5	1.42
15838938--15838984	21	2.2	22	92	3	78	21	19	38	21	1.94
15845661--15845784	43	2.9	42	80	4	133	29	13	26	29	1.94
15846427--15846709	22	12.5	22	67	13	135	28	13	20	38	1.90
15846419--15846686	69	3.9	69	85	1	331	29	13	19	37	1.90
15854914--15854975	30	2.1	30	87	3	90	38	12	8	40	1.73
15855315--15855350	19	2.0	17	89	10	54	75	0	0	25	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173