genome.fa.s17.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  21  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5982639--5982694	16	3.5	16	85	0	85	30	28	5	35	1.80
5983277--5983353	20	3.8	20	72	6	66	41	22	25	10	1.85
5987938--5988096	24	7.0	24	71	11	118	30	25	19	24	1.98
5987897--5988048	64	2.4	64	90	0	232	29	25	19	26	1.98
5997793--5997824	7	4.6	7	100	0	64	56	0	12	31	1.37
5998033--5998102	36	1.9	36	97	0	131	14	15	28	41	1.86
5999878--5999911	17	2.0	17	88	0	50	44	14	8	32	1.76
6004648--6004703	28	2.0	28	100	0	112	50	21	17	10	1.77
6008164--6008220	3	19.3	3	83	3	71	3	1	61	33	1.23
6009501--6009560	31	1.9	31	86	0	84	46	18	10	25	1.79
6016092--6016263	93	1.8	93	86	0	245	13	18	29	38	1.90
6017968--6018016	22	2.2	23	96	3	91	55	0	8	36	1.30
6019855--6019888	14	2.4	15	90	9	54	79	0	0	20	0.73
6031299--6031367	24	2.9	24	86	0	102	27	11	18	42	1.85
6032481--6032559	22	3.6	22	74	16	83	55	22	10	11	1.65
6032485--6032570	43	2.0	43	100	0	172	58	20	9	11	1.61
6033741--6033775	3	12.0	3	87	6	54	34	62	2	0	1.10
6043415--6043454	14	3.0	14	82	10	57	0	25	0	75	0.81
6043415--6043467	27	2.0	26	88	3	79	0	24	1	73	0.93
6043670--6043709	20	1.9	22	90	10	66	52	0	0	47	1.00
6043670--6043728	28	2.0	30	81	12	70	55	1	0	42	1.09
6049490--6049781	50	5.9	50	83	2	311	28	20	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6069120--6069280	85	1.9	85	80	0	187	29	15	17	37	1.91
6071308--6071399	19	4.8	19	87	0	139	38	16	9	35	1.82
6071285--6071399	38	2.9	38	89	5	158	39	16	8	35	1.80
6071875--6072338	44	10.6	45	72	12	244	26	22	20	30	1.98
6071913--6072357	217	2.0	218	89	2	680	26	22	20	30	1.98
6072706--6072827	44	2.8	44	86	9	178	27	25	18	27	1.98
6072827--6073140	88	3.6	88	92	0	502	20	24	28	26	1.99
6072903--6073135	44	5.3	44	64	6	139	21	23	28	26	1.99
6075312--6075372	26	2.3	26	83	5	70	57	4	14	22	1.57
6080021--6080110	19	4.7	19	87	0	135	38	15	10	35	1.81
6079996--6080110	38	2.9	38	89	5	158	39	15	8	36	1.79
6082676--6082739	27	2.4	27	81	0	74	42	23	18	15	1.89
6084341--6084563	74	3.2	68	78	11	215	44	8	5	40	1.59
6084403--6084545	64	2.2	65	85	4	193	47	9	5	37	1.59
6087715--6087758	15	2.9	15	75	3	52	54	2	2	40	1.25
6090364--6090487	42	2.9	41	80	9	117	30	29	16	22	1.96
6090334--6090486	43	3.5	44	77	4	150	30	27	16	26	1.97
6097237--6097331	40	2.3	40	90	3	145	0	28	8	63	1.24
6097341--6097384	5	8.6	5	83	11	54	61	0	0	38	0.96
6098084--6098118	16	2.1	17	89	5	54	45	0	11	42	1.40
6098896--6098968	38	1.9	38	81	10	87	54	2	2	39	1.29
6105024--6105146	60	2.0	60	84	4	158	44	17	17	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6109381--6109425	22	2.0	22	91	0	72	48	15	2	33	1.57
6113151--6113195	22	2.0	22	91	0	72	48	15	2	33	1.57
6115816--6115877	22	2.9	22	76	11	67	25	1	19	53	1.54
6120847--6120897	24	2.1	24	82	17	61	49	3	7	39	1.51
6120860--6120928	31	2.2	31	85	10	88	52	2	7	37	1.44
6122274--6122311	19	2.1	19	85	14	53	44	0	2	52	1.14
6129053--6129104	25	2.1	25	86	13	72	21	11	13	53	1.70
6134157--6134251	20	4.8	20	82	10	106	34	7	16	41	1.77
6136119--6136171	13	4.1	13	85	0	79	35	28	7	28	1.84
6142284--6142314	6	5.2	6	92	0	53	32	3	64	0	1.09
6152161--6152193	17	1.9	17	93	0	57	60	24	6	9	1.49
6152159--6152224	24	2.8	24	84	11	91	57	28	4	9	1.49
6152393--6152430	20	1.9	20	84	10	51	50	15	2	31	1.58
6154596--6154835	50	4.7	50	81	4	241	27	22	28	22	1.99
6160726--6161074	179	2.0	176	91	2	565	22	14	18	44	1.86
6163633--6163679	6	7.8	6	86	9	53	29	17	23	29	1.97
6169637--6169670	17	2.0	17	88	0	50	14	50	17	17	1.79
6169958--6169984	6	4.5	6	100	0	54	85	0	14	0	0.61
6174534--6174579	21	2.2	21	92	0	74	36	21	17	23	1.94
6177568--6177631	23	2.6	25	78	9	78	18	15	28	37	1.92
6187881--6187935	15	3.8	15	78	19	55	34	16	1	47	1.57
6188116--6188231	24	4.8	25	74	7	105	35	20	22	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6188316--6188442	64	2.0	64	80	0	146	35	23	17	23	1.95
6190605--6190946	170	2.0	170	91	1	551	28	15	15	40	1.88
6191000--6191257	130	2.0	130	92	0	426	31	10	20	37	1.87
6201857--6201900	11	3.9	11	79	5	52	70	4	25	0	1.06
6203701--6203779	40	2.0	40	84	0	104	16	31	32	18	1.94
6203744--6203835	34	2.7	34	93	0	157	6	34	35	22	1.80
6206822--6206946	59	2.1	59	100	0	250	40	9	9	40	1.71
6207014--6207151	22	6.4	22	84	7	176	24	0	28	47	1.52
6207014--6207151	43	3.2	43	84	3	197	24	0	28	47	1.52
6207287--6207340	12	4.3	12	77	13	56	53	0	0	46	1.00
6207290--6207342	19	2.8	19	100	0	106	52	0	0	47	1.00
6207290--6207348	7	8.9	7	82	17	81	52	0	0	47	1.00
6207304--6207360	26	2.2	25	87	12	80	52	0	0	47	1.00
6209666--6209771	52	2.0	52	83	7	135	52	2	21	22	1.60
6209739--6209814	22	3.5	21	73	21	59	48	3	25	22	1.67
6209758--6209822	11	5.8	11	85	8	78	52	4	21	21	1.65
6212937--6212982	15	3.0	15	83	3	56	47	17	8	26	1.76
6215922--6215978	3	20.3	3	74	13	50	63	0	33	3	1.12
6215922--6215978	25	2.3	25	87	6	80	63	0	33	3	1.12
6215942--6215983	14	3.1	14	79	3	50	66	0	30	2	1.04
6215922--6215973	11	4.7	11	79	9	61	63	0	34	1	1.06
6217266--6217303	20	1.9	20	88	0	58	57	31	0	10	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6217407--6217459	28	1.9	28	84	3	72	56	20	1	20	1.51
6217529--6217602	20	3.5	20	80	8	67	55	20	1	22	1.51
6217708--6217759	21	2.5	20	79	11	52	57	25	1	15	1.48
6217932--6218014	7	11.9	7	72	0	58	51	26	0	21	1.48
6217932--6218026	14	6.8	14	80	0	73	53	26	0	20	1.45
6217937--6218061	35	3.6	35	73	13	105	55	24	0	20	1.49
6218266--6218293	7	4.0	7	100	0	56	57	28	0	14	1.38
6218501--6218543	22	1.9	23	85	4	61	60	20	0	18	1.36
6218624--6218725	14	7.1	14	68	8	53	51	19	0	28	1.47
6219209--6219307	43	2.3	43	78	3	119	37	27	13	22	1.91
6222265--6222317	27	2.0	27	81	7	63	54	20	3	20	1.60
6222467--6222641	20	8.9	20	66	13	69	51	23	1	24	1.55
6222611--6222635	13	1.9	13	100	0	50	56	24	0	20	1.43
6222551--6222660	20	5.6	20	75	7	64	54	21	0	23	1.45
6222735--6222814	20	3.9	22	74	18	75	56	18	0	25	1.42
6222728--6222767	14	2.9	14	88	0	62	55	17	0	27	1.43
6223054--6223090	18	1.9	19	89	10	58	54	13	0	32	1.40
6223009--6223118	40	2.8	40	79	2	98	49	20	0	29	1.56
6223064--6223119	18	3.0	18	77	10	58	48	19	1	30	1.59
6223114--6223174	21	2.9	21	74	13	63	45	26	0	27	1.54
6223114--6223151	7	5.3	7	87	6	58	44	28	0	26	1.54
6223177--6223220	20	2.1	21	84	12	56	54	20	2	22	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6223185--6223241	14	4.2	14	77	4	55	56	17	3	22	1.56
6223271--6223368	20	4.8	20	78	12	78	51	24	1	23	1.55
6223278--6223328	27	1.9	26	84	4	66	47	31	0	21	1.51
6223338--6223427	20	4.5	20	73	5	83	50	23	2	24	1.61
6223396--6223422	13	2.1	13	100	0	54	51	33	0	14	1.43
6223398--6223456	20	3.0	20	74	18	61	54	28	0	16	1.43
6223404--6223462	31	1.9	31	86	6	84	55	25	0	18	1.42
6223518--6223589	20	3.6	20	75	3	65	56	22	1	19	1.49
6223763--6223846	40	2.1	39	86	2	114	52	15	1	30	1.51
6223769--6223834	20	3.3	20	70	8	53	50	15	1	33	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173