genome.fa.s17.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  168  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50547342--50547393	26	2.0	26	96	0	95	28	34	23	13	1.92
50547310--50547676	104	3.6	103	92	3	598	30	30	19	19	1.97
50547548--50547598	26	2.0	26	96	0	93	29	35	23	11	1.90
50548006--50548069	30	2.2	29	81	10	76	29	28	6	35	1.82
50548013--50548069	30	1.9	30	85	3	80	29	24	7	38	1.82
50549791--50549828	19	2.0	19	85	10	51	47	0	15	36	1.46
50552180--50552313	40	3.3	40	78	9	155	23	14	29	32	1.94
50552196--50552311	41	2.9	39	74	12	108	23	13	29	33	1.93
50556276--50556302	14	1.9	14	100	0	54	77	0	0	22	0.76
50556479--50556507	13	2.1	14	93	6	51	62	0	0	37	0.96
50559628--50559673	8	5.9	8	82	7	51	28	2	0	69	1.00
50559639--50559672	7	4.7	7	85	7	50	26	2	0	70	1.01
50571696--50571806	37	3.0	37	94	0	186	37	12	20	28	1.90
50579312--50579422	37	3.0	37	94	0	186	37	12	20	28	1.90
50582164--50582255	45	2.0	45	87	0	130	41	9	26	22	1.85
50583037--50583072	18	2.0	18	88	0	54	30	13	36	19	1.91
50590791--50590837	23	2.0	23	83	8	58	34	8	2	55	1.42
50591091--50591124	6	5.5	6	89	3	50	38	0	0	61	0.96
50591445--50591655	107	2.0	107	95	0	377	30	19	18	31	1.96
50596739--50596810	28	2.6	28	93	2	119	45	9	0	44	1.36
50597204--50597269	29	2.3	27	80	10	78	46	4	0	48	1.22
50597455--50597550	19	5.2	19	81	5	124	48	0	13	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50597455--50597550	37	2.6	37	98	0	183	48	0	13	37	1.43
50602147--50602185	21	1.9	19	85	10	51	20	23	0	56	1.42
50604983--50605020	15	2.5	16	83	12	53	21	2	0	76	0.91
50607739--50607816	38	2.1	38	100	0	156	39	20	15	24	1.91
50616359--50616734	90	4.3	87	73	11	259	52	18	10	18	1.72
50630651--50630706	23	2.4	24	82	11	71	41	1	1	55	1.21
50631218--50631280	21	3.0	21	79	6	65	31	22	19	26	1.97
50634138--50634180	13	3.3	13	83	6	52	72	0	2	25	0.97
50635119--50635204	21	4.0	23	82	11	101	36	24	23	16	1.94
50635119--50635210	44	2.2	41	84	7	114	35	25	22	16	1.94
50636197--50636237	18	2.1	21	86	13	61	51	2	0	46	1.14
50636366--50636422	15	3.8	15	75	13	55	40	0	0	59	0.97
50636378--50636428	25	2.1	24	85	10	68	43	0	0	56	0.99
50638086--50638139	3	16.7	3	83	11	63	35	3	1	59	1.26
50638112--50638145	15	2.3	15	94	0	59	35	8	0	55	1.31
50644124--50644170	20	2.5	19	75	6	51	57	2	4	36	1.30
50648343--50648398	29	1.9	29	82	7	69	17	44	21	16	1.86
50651875--50651959	41	2.1	41	95	0	152	48	14	29	8	1.72
50652027--50652096	23	3.0	23	95	0	122	50	21	27	1	1.57
50652255--50652304	18	2.8	18	90	0	82	42	14	14	30	1.84
50653088--50653127	21	1.9	21	90	10	64	45	0	2	52	1.14
50660165--50660220	23	2.4	24	82	11	71	41	1	1	55	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50660732--50660794	21	3.0	21	79	6	65	31	22	19	26	1.97
50663654--50663696	13	3.3	13	83	6	52	72	0	2	25	0.97
50664635--50664720	21	4.0	23	82	11	101	36	24	23	16	1.94
50664635--50664726	44	2.2	41	84	7	114	35	25	22	16	1.94
50665718--50665764	24	2.0	24	84	8	62	51	4	0	44	1.21
50665890--50665954	30	2.3	27	86	7	85	41	0	0	58	0.98
50665902--50665954	27	2.1	26	86	10	74	43	0	0	56	0.99
50665895--50665946	16	3.4	16	75	25	58	40	0	0	59	0.97
50667618--50667671	3	16.7	3	83	11	63	35	3	1	59	1.26
50667644--50667677	15	2.3	15	94	0	59	35	8	0	55	1.31
50673656--50673702	20	2.5	19	75	6	51	57	2	4	36	1.30
50677877--50677932	29	1.9	29	82	7	69	17	44	21	16	1.86
50678989--50679013	4	6.2	4	100	0	50	76	0	0	24	0.80
50680504--50680544	16	2.6	16	78	21	50	63	0	4	31	1.15
50684317--50684363	21	2.2	22	92	3	78	21	38	19	21	1.94
50687329--50687375	2	23.5	2	91	0	76	51	48	0	0	1.00
50692229--50692292	32	2.0	32	90	0	101	35	9	17	37	1.82
50698541--50698634	37	2.5	38	78	15	97	48	1	13	36	1.50
50700528--50701316	44	17.9	43	69	15	224	30	27	16	25	1.96
50700530--50701316	88	8.9	85	72	10	512	30	27	16	26	1.96
50700584--50701324	132	5.6	132	96	0	1275	29	28	16	26	1.96
50712518--50712554	12	3.0	13	84	11	51	29	40	18	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50715152--50715249	29	3.3	28	79	8	79	33	18	3	44	1.65
50715126--50715269	30	4.8	29	74	8	110	34	20	4	41	1.71
50716886--50716921	3	12.0	3	93	0	63	63	0	2	33	1.08
50717592--50717635	20	2.2	20	84	8	54	79	0	13	6	0.92
50718324--50718431	44	2.6	40	71	16	110	25	18	24	31	1.97
50718439--50719047	174	3.5	172	86	4	640	26	22	21	29	1.99
50718627--50719256	130	4.9	127	87	4	556	26	23	21	28	1.99
50718454--50719217	304	2.5	304	95	0	1366	26	22	21	28	1.99
50718752--50719087	174	1.9	174	93	0	582	27	23	20	28	1.99
50718926--50719347	130	3.2	130	92	0	700	27	23	21	27	1.99
50718627--50719444	434	1.9	435	93	0	1406	27	23	20	28	1.99
50718480--50719343	46	19.9	42	72	12	443	26	23	21	28	1.99
50719439--50720051	86	7.1	86	87	3	759	25	24	21	28	1.99
50719501--50719629	44	2.9	44	69	13	120	26	24	23	26	2.00
50719440--50720051	259	2.4	258	85	4	804	25	24	21	28	1.99
50720923--50720966	20	2.2	20	84	8	54	79	0	13	6	0.92
50721636--50721694	6	9.3	6	80	10	64	74	0	25	0	0.82
50722191--50722239	10	4.6	11	73	19	50	36	2	0	61	1.08
50722507--50722766	17	14.6	17	69	15	125	32	14	9	43	1.77
50722508--50722691	54	3.5	51	80	6	165	32	13	8	45	1.73
50722559--50722691	18	7.5	18	74	13	107	33	15	7	44	1.74
50722508--50722675	70	2.4	70	80	8	173	32	13	8	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50722508--50722673	18	9.4	18	68	17	80	32	13	9	44	1.76
50722645--50722787	75	1.9	75	82	5	182	34	14	9	41	1.78
50722804--50722853	17	2.8	18	75	6	57	34	14	10	42	1.78
50722875--50722928	17	2.9	19	86	10	85	29	12	11	46	1.77
50722794--50722930	18	7.3	18	70	14	89	33	11	10	43	1.76
50726108--50726146	16	2.4	16	91	4	60	48	0	2	48	1.15
50729235--50729321	36	2.4	36	92	0	138	27	29	16	26	1.96
50736394--50736567	89	2.0	89	97	0	330	40	21	20	17	1.91
50737009--50737124	57	2.0	57	100	0	232	39	12	10	37	1.77
50744678--50744721	18	2.4	18	88	0	61	13	2	43	40	1.57
50745880--50745921	20	2.1	20	90	0	66	40	11	16	30	1.85
50745930--50745960	15	2.1	15	100	0	62	22	12	25	38	1.90
50750597--50750638	20	2.1	20	90	0	66	40	11	16	30	1.85
50750647--50750677	15	2.1	15	100	0	62	22	12	25	38	1.90
50753613--50753652	13	3.0	13	82	7	53	45	40	0	15	1.46
50753615--50753657	13	3.2	13	80	6	50	46	32	0	20	1.51
50753597--50753680	27	3.1	26	74	6	78	44	33	2	20	1.64
50754066--50754184	64	1.9	63	87	1	175	31	10	34	22	1.89
50759066--50759357	50	5.8	50	89	1	442	26	23	30	20	1.98
50762147--50762178	4	8.0	4	100	0	64	50	25	0	25	1.50
50766927--50766971	22	2.0	24	91	8	76	53	0	22	24	1.46
50769100--50769518	126	3.4	124	87	3	574	31	22	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50771055--50771089	18	1.9	19	88	11	56	17	0	5	77	0.96
50776660--50776768	10	11.1	10	72	15	59	67	0	32	0	0.91
50776647--50776793	14	10.5	14	70	13	90	68	0	30	0	0.94
50776646--50776794	41	3.8	40	77	15	125	68	0	30	0	0.95
50776638--50776797	31	5.0	31	74	18	114	66	0	32	0	0.96
50777123--50778876	315	5.6	315	95	1	3057	51	7	10	30	1.64
50778854--50778896	21	2.0	21	90	0	68	53	2	4	39	1.34
50783343--50783379	10	3.6	10	88	3	56	0	29	0	70	0.88
50783459--50783522	27	2.4	27	91	0	101	17	28	34	20	1.95
50783484--50783544	27	2.3	27	82	0	68	19	29	32	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173