genome.fa.s17.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  122  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37476988--37477017	5	6.0	5	100	0	60	20	0	0	80	0.72
37477972--37478042	12	5.9	12	77	0	70	25	5	7	61	1.43
37477972--37478030	3	19.7	3	78	0	55	23	6	5	64	1.38
37478108--37478163	24	2.3	24	84	6	69	28	5	5	60	1.41
37490161--37490570	27	15.2	27	83	1	455	41	20	17	20	1.90
37490965--37491031	29	2.2	31	86	7	93	28	14	14	41	1.86
37502675--37502733	21	2.8	20	80	14	57	54	3	1	40	1.27
37502715--37502781	11	6.4	11	72	20	63	55	0	4	40	1.20
37503273--37503307	17	2.1	17	88	0	52	40	2	0	57	1.14
37505962--37506000	18	2.2	18	86	4	53	56	7	23	12	1.62
37508851--37508886	15	2.3	15	90	4	54	27	8	13	50	1.71
37512177--37512285	41	2.7	41	82	0	119	30	22	19	28	1.98
37515222--37515400	27	6.6	26	80	8	171	46	21	12	19	1.82
37515222--37515402	54	3.3	53	80	9	204	46	21	12	19	1.82
37515222--37515400	81	2.2	81	85	5	227	46	21	12	19	1.82
37515247--37515420	81	2.1	81	84	3	215	45	20	14	19	1.84
37515582--37515635	26	2.1	26	92	0	90	18	24	24	33	1.97
37515743--37515831	28	3.2	28	81	0	115	23	21	21	33	1.97
37519888--37519930	17	2.4	18	84	7	52	0	23	6	69	1.12
37521756--37521825	9	7.6	9	82	6	77	41	25	7	25	1.81
37521753--37521825	38	1.9	38	91	0	119	43	24	6	24	1.78
37524832--37524964	62	2.3	57	85	8	178	40	2	3	53	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37524847--37524963	58	2.0	62	88	6	179	41	2	3	52	1.32
37526076--37526127	9	5.6	9	80	8	59	44	28	5	21	1.75
37526074--37526127	20	2.8	20	86	5	76	46	27	5	20	1.73
37527251--37527290	16	2.5	16	88	8	55	30	5	30	35	1.79
37528188--37528218	16	1.9	16	93	0	53	51	0	0	48	1.00
37532156--37532215	26	2.3	27	85	2	77	45	13	10	31	1.76
37541790--37541842	3	17.7	3	96	0	97	32	1	0	66	1.03
37551434--37551481	2	24.0	2	95	0	87	0	47	0	52	1.00
37554867--37554923	28	2.0	28	100	0	114	52	12	21	14	1.73
37563834--37563913	23	3.3	23	68	21	72	26	15	27	31	1.95
37563746--37563936	101	1.9	102	87	3	287	25	14	28	31	1.95
37563746--37563936	51	3.8	51	88	3	287	25	14	28	31	1.95
37563947--37564034	46	2.0	44	84	8	115	25	17	23	34	1.96
37564142--37564213	37	1.9	38	82	2	92	43	4	20	31	1.71
37569303--37569334	17	1.9	16	93	6	55	28	0	6	65	1.16
37569743--37569775	15	2.3	15	89	5	50	18	6	6	69	1.30
37577374--37577406	17	1.9	17	93	0	57	75	9	0	15	1.03
37578690--37578730	18	2.3	19	83	12	59	24	4	0	70	1.06
37578699--37578736	18	2.1	18	90	0	58	26	5	0	68	1.11
37578748--37578831	3	27.7	3	85	7	116	33	4	0	61	1.17
37584610--37584674	19	3.2	20	84	10	62	33	18	9	38	1.83
37584596--37584667	19	3.5	20	78	15	74	37	16	9	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37584622--37584674	19	2.7	19	88	5	70	35	15	11	37	1.83
37585043--37585275	44	5.3	43	65	6	126	20	24	29	26	1.99
37585034--37586065	88	11.8	88	85	1	1153	22	24	25	27	2.00
37585092--37585668	44	13.2	44	64	7	197	22	25	24	26	2.00
37595192--37595225	4	8.5	4	100	0	68	26	23	0	50	1.50
37599577--37599979	110	3.7	110	91	2	627	31	17	17	34	1.93
37605053--37605193	43	3.3	43	90	3	203	34	14	26	24	1.94
37606339--37606773	50	8.7	49	72	3	321	33	25	19	21	1.97
37606333--37606773	100	4.4	100	90	0	659	33	25	19	21	1.97
37609529--37609938	110	3.8	110	92	2	659	30	17	18	34	1.94
37609529--37609934	221	1.9	216	90	3	652	30	17	18	33	1.94
37614752--37614853	11	9.6	11	67	22	58	59	1	2	35	1.23
37614755--37614819	30	2.2	30	91	0	103	61	3	3	32	1.27
37614739--37614912	42	4.5	37	84	13	203	62	1	2	33	1.15
37614738--37614905	79	2.1	82	87	8	247	63	1	2	32	1.15
37614778--37614912	37	3.5	38	88	8	202	62	0	2	34	1.07
37616706--37616774	16	4.2	16	94	3	120	23	0	37	39	1.55
37616706--37616774	33	2.1	32	94	2	120	23	0	37	39	1.55
37625006--37625136	56	2.3	57	84	2	165	45	0	4	49	1.28
37625100--37625149	26	2.0	26	88	4	75	52	4	0	44	1.20
37625309--37625360	16	3.2	16	81	10	70	30	25	3	40	1.73
37630138--37631485	228	5.9	228	93	0	2153	28	29	22	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37630138--37631485	455	3.0	455	93	0	2160	28	29	22	19	1.98
37630138--37631485	683	2.0	683	91	0	2160	28	29	22	19	1.98
37630138--37631728	228	7.0	227	91	1	1585	28	27	23	20	1.99
37633224--37633266	19	2.2	20	87	4	61	53	11	2	32	1.50
37646287--37646348	29	2.1	29	85	5	81	32	9	8	50	1.65
37647560--37647604	20	2.2	20	92	7	74	46	0	13	40	1.43
37653150--37653192	19	2.4	18	85	11	54	32	11	4	51	1.59
37654584--37654620	13	2.8	14	80	12	51	29	2	0	67	1.04
37656003--37656426	43	9.8	43	86	4	561	27	30	20	21	1.98
37656741--37656797	21	2.7	21	83	0	78	5	42	15	36	1.70
37656846--37656908	21	3.0	21	86	4	92	9	42	11	36	1.73
37662457--37662716	16	17.2	16	69	25	110	38	1	13	46	1.50
37662457--37662637	31	6.1	30	71	25	120	38	0	13	46	1.48
37662460--37662622	40	4.2	40	80	14	182	38	0	13	47	1.48
37662496--37662555	9	7.2	9	75	17	67	36	0	16	46	1.47
37662500--37662716	91	2.3	93	91	5	359	38	1	12	47	1.50
37662666--37662715	15	2.9	17	80	19	68	36	2	14	48	1.55
37662615--37662758	79	1.8	77	97	2	270	38	2	11	47	1.52
37666280--37666601	73	4.4	73	94	1	491	34	18	16	29	1.94
37666280--37666599	147	2.2	147	89	2	491	35	18	16	29	1.93
37667679--37667769	41	2.2	41	80	7	105	17	26	24	31	1.97
37667740--37667952	41	5.2	41	84	3	250	31	23	23	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37668017--37668168	41	3.8	39	75	11	121	17	22	21	38	1.93
37671069--37671115	22	2.1	22	88	0	67	68	2	4	25	1.19
37671930--37671993	29	2.2	29	91	5	103	68	0	1	29	0.99
37673098--37673258	85	1.9	85	80	12	188	25	21	23	29	1.99
37673322--37673608	51	5.8	50	74	11	234	29	25	17	27	1.97
37673369--37673653	46	6.0	46	74	8	230	29	24	16	29	1.97
37673325--37673659	97	3.5	97	85	3	406	28	25	17	28	1.97
37673959--37674014	24	2.3	24	90	0	94	30	25	10	33	1.90
37674509--37674535	13	2.1	13	100	0	54	85	0	0	14	0.61
37685142--37685196	3	18.7	3	81	3	67	65	1	3	29	1.20
37686510--37686542	11	2.8	12	86	9	50	6	0	15	78	0.93
37692308--37692369	19	3.2	19	69	17	56	48	1	0	50	1.10
37693369--37693462	48	2.0	48	87	8	138	19	12	27	40	1.88
37699193--37699231	19	2.1	18	85	4	51	61	28	5	5	1.39
37706139--37706221	3	27.7	3	78	9	89	62	1	2	33	1.16
37709718--37709765	21	2.3	21	88	0	69	25	22	22	29	1.99
37711163--37711331	83	2.0	83	90	0	266	33	13	29	23	1.93
37719884--37719989	42	2.5	41	89	3	158	16	3	48	31	1.64
37725946--37725986	22	1.9	21	85	5	55	7	26	12	53	1.64
37739200--37739298	47	2.1	47	85	9	130	61	4	3	31	1.29
37745059--37745750	47	14.6	47	93	1	1114	33	8	29	29	1.86
37745059--37745750	143	4.9	141	93	1	1114	33	8	29	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37745059--37745750	190	3.6	191	93	1	1169	33	8	29	29	1.86
37748203--37748229	14	1.9	14	100	0	54	59	14	14	11	1.62
37762810--37763037	46	4.9	46	86	2	271	45	18	11	24	1.82
37762838--37763037	92	2.2	92	93	0	337	46	19	11	23	1.82
37763011--37763059	24	2.0	24	92	0	80	46	18	14	20	1.83
37762959--37763101	68	2.1	69	89	5	218	47	18	11	22	1.80
37762913--37763151	114	2.1	115	90	3	374	46	19	11	23	1.81
37763029--37763153	46	2.8	46	84	4	166	45	19	12	23	1.83
37763762--37763914	44	3.5	44	75	13	147	31	27	17	23	1.97
37765425--37765468	17	2.4	19	81	18	65	31	4	13	50	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173