genome.fa.s17.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  41  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11078286--11078407	37	3.1	39	74	12	124	32	22	19	25	1.97
11079398--11079422	7	3.6	7	100	0	50	56	0	0	44	0.99
11081322--11081397	39	1.9	38	86	5	107	31	18	23	26	1.97
11081341--11081416	39	1.9	39	82	10	93	35	21	22	21	1.96
11082600--11082655	21	2.7	21	97	0	103	17	3	48	30	1.65
11082600--11082657	7	8.3	7	82	0	71	17	3	50	29	1.62
11085485--11085667	37	5.0	37	93	1	307	25	21	15	37	1.93
11085485--11085714	111	2.0	114	86	9	326	26	21	15	37	1.92
11085631--11085998	46	7.6	46	84	10	448	28	22	14	34	1.93
11085674--11085992	52	6.3	52	86	5	392	28	22	14	35	1.93
11085643--11085998	98	3.6	96	84	9	477	28	21	14	34	1.93
11090046--11090287	43	5.7	43	84	3	301	26	19	27	26	1.99
11090060--11090287	85	2.7	86	89	2	343	27	19	27	25	1.99
11090040--11090287	128	1.9	128	84	3	329	27	19	27	25	1.99
11090933--11091007	35	2.1	35	85	0	96	34	14	21	29	1.93
11095573--11095598	13	2.0	13	100	0	52	30	7	15	46	1.74
11095628--11095669	19	2.2	19	83	8	50	28	21	9	40	1.84
11097553--11097592	19	2.1	19	90	9	64	15	12	5	67	1.38
11099848--11100619	132	5.7	132	91	5	1208	27	19	24	28	1.98
11100072--11100103	15	2.1	15	100	0	64	25	31	6	37	1.81
11104089--11104131	2	21.5	2	100	0	86	48	51	0	0	1.00
11105284--11105345	34	1.9	33	81	12	76	48	1	1	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11105310--11105410	39	2.5	40	79	17	97	50	1	0	46	1.19
11115635--11115730	39	2.5	39	84	6	140	30	17	15	36	1.91
11120092--11120187	39	2.5	39	94	0	174	28	18	15	37	1.92
11120200--11120252	16	3.3	16	72	27	58	18	32	3	45	1.68
11126141--11126608	37	12.6	37	81	10	487	24	22	15	36	1.93
11126141--11126601	72	6.2	74	82	9	523	24	23	15	36	1.93
11128724--11128762	12	3.2	12	100	0	78	23	35	0	41	1.55
11131792--11131882	44	2.1	44	97	0	173	27	12	13	47	1.78
11134060--11134328	115	2.3	115	86	6	352	49	7	4	39	1.49
11134451--11134497	20	2.3	20	82	10	60	6	14	42	36	1.72
11134834--11134897	30	2.1	30	85	0	83	4	12	48	34	1.62
11139734--11139788	21	2.5	22	82	11	60	74	10	14	0	1.07
11139730--11139785	23	2.3	24	79	14	62	75	10	14	0	1.06
11140589--11140629	3	13.7	3	100	0	82	34	0	0	65	0.93
11140858--11140901	22	2.0	23	86	4	63	38	6	2	52	1.41
11149353--11149424	31	2.3	31	92	0	117	34	25	11	29	1.90
11149349--11149816	233	2.0	233	96	0	864	40	23	9	26	1.85
11149586--11149657	31	2.3	31	82	0	90	36	22	9	31	1.87
11151903--11151947	19	2.3	20	80	3	56	60	4	11	24	1.49
11163864--11163910	23	2.0	23	100	0	94	48	21	21	8	1.76
11170543--11170588	16	2.8	17	76	6	58	32	2	0	65	1.05
11172584--11172624	21	2.0	21	90	0	64	24	39	17	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11173087--11173187	39	2.5	40	77	7	107	21	9	30	37	1.86
11177792--11177867	22	3.4	22	72	16	84	34	17	3	44	1.67
11177780--11177870	45	2.0	45	97	0	173	36	18	4	40	1.71
11181468--11181577	48	2.3	48	80	0	121	36	18	20	25	1.94
11196786--11196972	95	2.0	95	89	0	284	31	35	1	31	1.68
11202013--11202050	20	1.9	20	88	0	58	26	7	31	34	1.85
11203993--11204145	48	3.2	48	62	22	113	30	35	2	32	1.72
11203945--11204226	95	3.0	95	96	0	519	31	35	2	30	1.70
11217940--11217976	19	2.0	18	89	5	56	67	5	0	27	1.12
11223973--11224016	23	1.9	23	90	0	70	54	4	9	31	1.52
11224163--11224212	26	1.9	26	84	8	66	50	6	16	28	1.68
11226047--11226147	44	2.3	44	84	3	123	29	31	13	24	1.94
11226329--11226438	44	2.5	44	84	0	139	24	18	25	31	1.97
11231098--11231216	25	4.8	25	81	6	116	18	27	21	32	1.96
11231124--11231266	50	2.9	50	78	2	144	20	26	19	32	1.97
11231099--11231241	75	1.9	74	81	5	171	18	27	20	33	1.96
11231134--11231267	25	5.4	25	78	8	85	21	26	19	32	1.97
11231201--11231336	25	5.5	24	69	13	80	25	27	16	30	1.97
11240553--11240806	138	1.8	138	87	0	382	37	11	19	31	1.87
11243314--11243353	17	2.3	18	91	4	64	67	5	5	22	1.30
11245908--11245990	41	2.0	41	90	0	130	38	27	1	32	1.65
11251482--11251569	44	2.0	44	88	4	133	30	25	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11258641--11258735	42	2.2	41	81	7	118	30	25	17	26	1.98
11274195--11274233	18	2.2	18	85	0	51	20	2	5	71	1.17
11288373--11288426	27	2.0	27	85	0	72	24	24	12	38	1.90
11288441--11288616	53	3.3	52	87	3	262	27	22	9	40	1.84
11288441--11288612	26	6.5	27	73	4	145	28	23	7	40	1.81
11297064--11297141	33	2.4	32	80	6	84	32	17	24	25	1.97
11305107--11305169	18	3.7	17	78	14	76	44	1	0	53	1.10
11309037--11309083	15	3.3	15	82	11	71	38	14	19	27	1.91
11309042--11309084	13	3.2	13	81	12	59	41	11	20	25	1.86
11309672--11309855	43	4.3	43	76	6	194	31	26	17	23	1.97
11314735--11314951	100	2.2	101	83	4	260	39	12	18	29	1.88
11314835--11315187	134	2.6	134	82	1	429	40	13	16	30	1.86
11314835--11315114	136	2.1	136	88	1	411	41	12	15	30	1.84
11315063--11315285	98	2.3	98	84	0	266	35	13	18	32	1.90
11315161--11315664	134	3.8	133	79	4	505	37	12	18	31	1.88
11320496--11320540	24	1.9	24	86	13	67	46	8	6	37	1.61
11326374--11326450	26	2.9	26	75	5	66	38	2	22	36	1.68
11332632--11332686	25	2.2	26	83	9	69	49	20	7	23	1.74
11332710--11332950	27	8.9	26	84	6	284	19	15	21	43	1.87
11335568--11335601	16	2.1	16	88	5	50	8	8	2	79	1.03
11335582--11335610	12	2.3	13	94	5	51	3	13	0	82	0.79
11342990--11343018	14	2.1	14	100	0	58	41	13	17	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11349829--11349921	18	5.0	18	71	12	55	64	2	4	29	1.24
11349851--11349947	28	3.4	28	74	17	101	58	2	7	31	1.37
11349918--11349962	21	2.1	21	84	8	56	57	2	11	28	1.45
11350131--11350199	36	1.9	36	85	11	97	30	2	4	62	1.29
11350156--11350245	47	1.9	46	84	6	119	32	3	2	62	1.24
11350142--11350245	46	2.3	46	80	9	115	33	2	1	61	1.22
11350304--11350509	89	2.3	91	83	5	267	36	7	18	37	1.79
11357562--11358661	361	3.0	361	88	3	1553	30	9	22	37	1.86
11358649--11358689	18	2.2	20	86	8	59	41	2	12	43	1.55
11360677--11360757	26	3.1	26	90	0	126	33	24	22	19	1.97
11360923--11361058	27	5.0	27	80	3	148	18	13	22	45	1.84
11360920--11361058	54	2.6	54	80	0	170	18	14	22	44	1.86
11362851--11362947	37	2.6	37	95	0	158	30	20	19	28	1.97
11362755--11363009	141	1.8	141	84	0	348	30	20	19	30	1.97
11372968--11373006	20	2.0	20	84	0	51	53	0	23	23	1.46
11379226--11379266	17	2.3	19	80	20	52	51	4	0	43	1.23
11394855--11394887	17	1.9	17	100	0	66	24	27	6	42	1.78
11396775--11396805	9	3.4	9	90	0	53	25	12	22	38	1.90
11399660--11399695	17	2.1	17	89	0	54	22	19	2	55	1.56
11399900--11399961	23	2.8	22	81	18	67	77	4	3	14	1.06
11404258--11404340	24	3.2	27	85	11	129	37	2	10	49	1.51
11404258--11404356	26	3.8	24	80	18	85	37	2	11	49	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11404258--11404362	50	2.1	51	94	1	185	36	1	11	50	1.50
11406753--11406846	45	2.1	45	88	2	136	28	27	11	31	1.92
11412316--11412427	57	2.0	57	94	0	197	27	42	6	23	1.78
11412411--11412442	3	10.7	3	100	0	64	34	65	0	0	0.93
11413502--11413544	22	2.0	22	81	9	52	46	20	9	23	1.79
11414437--11414477	17	2.4	17	95	0	73	41	19	17	21	1.90
11414606--11414640	18	1.9	18	94	0	61	28	11	25	34	1.91
11414633--11414741	21	5.2	21	76	4	85	34	10	17	37	1.83
11420000--11420175	41	4.3	41	86	2	246	25	19	23	31	1.98
11420000--11420175	82	2.1	83	89	2	273	25	19	23	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173