genome.fa.s17.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  24  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6413702--6413822	25	4.8	24	73	16	77	26	14	7	52	1.67
6414196--6414231	16	2.2	16	100	0	72	25	0	36	38	1.56
6414467--6414501	18	2.0	17	88	5	52	54	0	0	45	0.99
6414354--6414638	157	1.8	157	94	0	507	43	2	4	48	1.39
6414604--6414638	15	2.2	16	90	5	54	51	0	0	48	1.00
6430314--6430373	3	20.7	3	77	19	65	30	3	0	66	1.07
6432515--6432637	57	2.2	57	85	7	162	39	17	24	19	1.92
6432537--6432661	57	2.2	55	85	8	162	41	16	23	18	1.90
6433122--6433159	20	1.9	20	100	0	76	60	5	5	28	1.40
6435472--6435627	43	3.6	43	83	3	181	28	15	24	31	1.95
6436987--6437053	35	2.0	34	85	8	93	22	23	0	53	1.46
6437082--6437558	52	9.2	52	88	7	670	24	23	0	51	1.52
6437334--6437404	24	3.2	24	62	25	64	26	29	0	43	1.55
6437082--6437511	147	2.8	147	89	5	621	24	23	0	50	1.53
6437421--6437558	54	2.6	56	90	5	178	22	23	0	52	1.52
6440589--6440808	114	1.9	114	90	2	354	33	20	15	31	1.93
6440857--6441006	61	2.6	57	80	10	153	19	21	19	40	1.92
6442540--6442592	25	2.3	24	84	12	67	28	18	0	52	1.46
6447507--6447564	6	10.0	6	82	14	77	15	3	0	81	0.83
6448216--6448246	12	2.6	12	94	0	53	29	6	3	61	1.37
6448362--6448408	20	2.3	22	75	14	55	27	2	0	70	0.99
6448378--6448404	14	1.9	14	100	0	54	29	3	0	66	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6450924--6450955	16	2.0	16	100	0	64	18	12	18	50	1.78
6451338--6451364	12	2.2	12	100	0	54	44	0	7	48	1.31
6451693--6451740	25	1.9	25	87	8	71	29	33	10	27	1.90
6455651--6455705	26	2.1	26	83	6	67	25	16	1	56	1.50
6457820--6457863	23	1.9	23	81	9	54	54	11	4	29	1.56
6458447--6458515	29	2.3	31	82	7	79	50	13	5	30	1.64
6463912--6463951	20	2.0	21	90	5	64	7	22	2	67	1.28
6464596--6465150	219	2.5	219	93	0	941	29	24	18	28	1.98
6464591--6465149	44	12.7	45	70	14	307	29	24	18	28	1.98
6465223--6465407	87	2.1	87	85	2	255	24	23	20	31	1.98
6465224--6465407	43	4.2	43	86	2	233	24	23	20	32	1.98
6466619--6466666	7	6.9	7	77	17	55	16	16	0	66	1.25
6466621--6466659	6	6.2	6	85	8	51	15	17	0	66	1.25
6466621--6466656	13	2.8	13	95	0	63	13	16	0	69	1.19
6467602--6467672	21	3.1	22	82	9	81	9	5	4	80	1.01
6467602--6467661	24	2.5	25	84	10	81	8	5	5	81	0.97
6469390--6469433	20	2.2	20	87	0	61	6	25	2	65	1.28
6472115--6472181	33	2.0	33	97	0	125	40	1	23	34	1.64
6472591--6472641	19	2.7	18	85	11	59	62	3	1	31	1.24
6473608--6473643	14	2.6	14	90	0	54	25	25	2	47	1.65
6480477--6480567	44	2.1	44	91	4	148	27	10	10	50	1.71
6490810--6490835	5	5.2	5	100	0	52	38	19	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6490784--6490835	26	2.0	26	81	7	61	34	15	26	23	1.94
6491356--6491401	16	2.6	17	80	19	51	45	0	32	21	1.52
6496138--6496181	24	1.9	24	90	9	74	36	0	2	61	1.09
6496275--6496302	9	3.1	9	100	0	56	57	10	0	32	1.33
6496245--6496386	68	2.1	66	93	2	239	44	9	5	40	1.60
6496375--6496416	16	2.6	16	92	0	66	42	7	2	47	1.43
6496390--6496452	23	2.8	23	80	4	67	46	1	1	50	1.20
6496245--6496408	68	2.5	65	83	12	196	45	9	4	40	1.57
6500004--6500047	23	1.9	23	86	9	63	68	2	20	9	1.28
6500002--6500050	25	1.9	25	83	4	62	67	2	20	10	1.30
6517926--6518713	289	2.7	285	79	5	789	31	24	18	25	1.98
6518779--6518823	23	2.0	23	86	0	63	28	13	17	40	1.88
6520637--6520698	12	5.2	11	79	14	61	30	1	3	64	1.19
6520657--6520714	15	3.8	15	73	24	50	24	5	1	68	1.19
6520649--6520709	30	2.0	30	84	12	81	26	4	1	67	1.20
6531949--6532058	56	2.0	56	96	0	202	19	8	25	47	1.77
6537338--6537373	13	2.8	13	95	0	63	41	0	5	52	1.24
6538614--6538671	25	2.3	25	85	5	73	15	22	22	39	1.91
6538662--6538716	22	2.5	23	82	8	69	14	27	14	43	1.84
6543186--6543220	13	2.7	13	86	0	52	42	0	0	57	0.99
6544756--6544790	18	2.1	18	89	10	56	2	17	0	80	0.84
6544756--6544790	17	2.1	16	89	5	52	2	17	0	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6551910--6551950	3	14.0	3	94	5	75	0	31	0	68	0.90
6556351--6556389	19	2.1	19	85	4	53	46	15	0	38	1.46
6556858--6556916	31	1.9	31	92	0	100	23	23	1	50	1.58
6557007--6557085	22	3.5	22	82	5	95	39	18	26	15	1.91
6557000--6557176	25	7.3	25	84	5	179	35	16	26	21	1.94
6560700--6560767	34	2.0	34	100	0	136	23	17	32	26	1.97
6561454--6561510	26	2.1	27	84	9	73	0	29	3	66	1.08
6563348--6563411	21	3.0	21	93	0	110	14	29	18	37	1.90
6563629--6563672	18	2.5	17	89	10	63	45	0	13	40	1.44
6563629--6563681	17	3.1	17	76	17	56	45	0	15	39	1.46
6566029--6566076	25	1.9	25	100	0	96	35	14	20	29	1.93
6568630--6568685	26	2.2	26	93	0	94	44	12	26	16	1.83
6568767--6568801	15	2.4	15	90	4	54	48	0	8	42	1.33
6570772--6570829	30	1.9	30	100	0	116	27	6	24	41	1.80
6573354--6573389	18	2.0	18	100	0	72	22	55	11	11	1.66
6591101--6591539	220	2.0	220	96	0	815	28	20	13	38	1.90
6592037--6592291	33	7.4	33	70	20	164	34	28	18	19	1.95
6592133--6592183	27	1.9	26	92	4	84	29	31	21	17	1.96
6592107--6592219	60	1.9	60	92	0	190	33	30	17	17	1.94
6592024--6592318	135	2.2	135	90	1	466	33	27	19	20	1.96
6595486--6595753	105	2.6	105	92	3	459	30	30	20	18	1.97
6596080--6596143	30	2.2	29	81	10	76	29	28	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6596087--6596143	30	1.9	30	85	3	80	29	24	7	38	1.82
6603106--6603156	26	2.0	26	96	0	93	29	35	23	11	1.90
6602968--6603234	103	2.6	105	92	3	450	30	30	20	18	1.96
6603563--6603626	30	2.2	29	81	10	76	29	28	6	35	1.82
6603570--6603626	30	1.9	30	85	3	80	29	24	7	38	1.82
6605463--6605505	20	2.2	20	95	0	77	48	0	11	39	1.40
6608356--6608400	22	2.1	22	87	4	65	40	0	4	55	1.20
6608367--6608411	22	2.1	21	88	12	65	42	0	0	57	0.98
6608385--6608420	17	2.1	18	89	5	56	41	0	2	55	1.14
6609643--6609702	28	2.1	28	100	0	120	50	18	10	21	1.76
6613917--6613958	18	2.4	19	76	15	54	64	2	0	33	1.07
6613917--6613960	17	2.5	18	75	17	56	63	2	0	34	1.07
6614561--6614601	20	2.0	20	90	0	64	26	7	12	53	1.64
6615047--6615087	21	2.0	20	85	4	55	24	2	21	51	1.60
6615732--6615765	17	2.1	17	88	5	52	35	2	11	50	1.54
6616395--6616449	20	2.6	21	77	16	51	58	5	1	34	1.32
6619788--6619853	31	2.1	31	82	0	78	40	1	6	51	1.36
6623525--6623633	57	1.9	58	90	1	175	22	23	14	39	1.91
6635485--6635509	8	3.1	8	100	0	50	48	0	0	52	1.00
6635481--6635530	16	2.8	18	73	17	50	46	0	2	52	1.12
6636652--6636682	2	15.5	2	93	0	53	51	3	0	45	1.17
6639552--6639611	30	2.0	31	83	3	77	40	0	41	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6639824--6639859	9	4.0	9	85	0	54	30	11	16	41	1.83
6639825--6639859	18	1.9	18	94	0	61	31	11	17	40	1.85
6639913--6639943	9	3.4	9	90	0	53	38	22	12	25	1.90
6649719--6649779	27	2.3	26	83	13	79	50	1	1	45	1.21
6650017--6650056	18	2.2	18	86	8	55	67	10	2	20	1.31
6650122--6650199	32	2.4	34	85	10	117	58	10	5	25	1.51
6657997--6658052	28	2.0	28	96	3	105	64	0	25	10	1.26
6661456--6661485	15	1.9	16	93	6	53	26	6	6	60	1.47
6666589--6666626	20	1.9	19	89	5	58	26	15	13	44	1.83
6669299--6669353	20	2.6	21	80	13	60	69	5	1	23	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173