genome.fa.s17.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  163  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48784567--48784607	21	2.0	21	85	0	55	12	12	41	34	1.80
48784932--48784970	18	2.3	17	91	8	62	38	0	0	61	0.96
48789191--48789228	15	2.5	15	87	8	51	31	0	2	65	1.06
48790902--48790939	20	1.9	20	88	0	58	50	0	2	47	1.15
48791445--48791478	16	2.1	16	94	0	59	79	0	8	11	0.94
48791461--48791507	23	2.1	22	92	4	76	63	4	21	10	1.43
48792685--48792731	22	2.2	22	85	7	62	55	0	4	40	1.19
48793915--48793939	8	3.1	8	100	0	50	24	0	24	52	1.48
48798482--48798507	8	3.2	8	100	0	52	26	0	0	73	0.84
48798790--48798823	16	2.1	17	94	5	61	0	14	0	85	0.60
48801149--48801231	41	2.0	41	95	0	148	33	18	10	37	1.85
48801521--48801569	25	2.0	25	88	8	73	34	20	26	18	1.95
48801577--48801680	50	2.1	50	85	3	138	34	19	25	21	1.96
48801607--48801764	25	6.3	25	75	10	126	35	20	25	18	1.95
48803479--48803534	19	3.1	18	80	12	60	55	1	0	42	1.10
48803484--48803529	20	2.3	20	88	3	67	52	2	0	45	1.13
48803709--48803739	16	1.9	16	93	0	53	35	6	9	48	1.62
48808545--48808606	31	2.0	31	90	0	97	29	19	17	33	1.95
48817584--48817762	90	2.0	90	100	0	358	37	26	5	30	1.79
48827350--48827376	9	3.0	9	100	0	54	44	0	11	44	1.39
48842519--48842808	44	6.6	44	75	7	218	27	22	23	25	2.00
48842519--48842808	90	3.3	87	75	10	225	27	22	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48842813--48842979	44	3.9	42	74	8	129	26	20	24	28	1.99
48842648--48843018	205	1.8	205	93	1	645	26	21	24	27	1.99
48844667--48844699	17	1.9	17	88	11	50	39	3	0	57	1.14
48844695--48844755	26	2.4	25	78	8	61	36	9	4	49	1.58
48844832--48844886	16	3.4	16	79	0	74	38	10	1	49	1.49
48844832--48844894	32	2.0	32	96	0	117	33	11	1	53	1.46
48848060--48848099	16	2.5	16	91	0	62	47	2	7	42	1.45
48848102--48848221	59	2.1	59	90	1	197	41	5	9	44	1.58
48848287--48848330	24	1.9	24	90	9	74	61	2	0	36	1.09
48851199--48851259	32	1.9	32	83	12	81	47	1	6	44	1.39
48866722--48866760	5	7.4	5	83	11	51	61	15	0	23	1.33
48866720--48866760	16	2.5	17	92	7	68	60	14	0	24	1.34
48866722--48866760	11	3.6	11	86	3	53	61	15	0	23	1.33
48867545--48867622	40	2.0	40	84	0	102	32	28	14	25	1.94
48874099--48874148	19	2.7	18	79	14	57	42	0	2	56	1.11
48876045--48876118	30	2.4	31	84	2	96	28	24	5	41	1.77
48877019--48877070	19	2.7	19	79	8	61	59	3	0	36	1.16
48877032--48877105	10	8.2	9	71	22	50	54	1	1	43	1.17
48885329--48885384	22	2.5	22	73	0	58	58	10	14	16	1.62
48888446--48888518	19	3.8	19	92	0	119	36	12	16	34	1.86
48888478--48888541	19	3.0	22	86	8	80	37	6	17	39	1.75
48888507--48888551	23	2.0	23	86	4	65	33	4	15	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48889844--48890038	98	2.0	98	95	0	354	28	10	25	35	1.89
48895413--48896460	132	7.9	131	93	1	1688	28	18	23	29	1.98
48896028--48896347	44	7.3	44	65	16	126	28	18	24	29	1.98
48895413--48896460	527	2.0	528	92	1	1755	28	18	23	29	1.98
48896689--48896761	19	3.8	19	92	0	119	36	12	16	34	1.86
48896721--48896784	19	3.0	22	86	8	80	37	6	17	39	1.75
48896750--48896794	23	2.0	23	86	4	65	33	4	15	46	1.66
48898132--48898160	5	6.0	5	92	8	51	0	37	0	62	0.96
48907660--48907853	64	3.0	64	80	3	212	37	20	20	21	1.94
48907669--48907883	32	6.7	31	79	7	184	35	20	21	21	1.96
48907927--48907986	27	2.2	27	82	11	70	30	25	25	20	1.99
48908054--48908135	24	3.5	23	81	5	83	50	24	4	20	1.68
48911800--48912053	83	3.1	83	98	0	483	48	10	3	37	1.56
48925855--48925880	5	5.2	5	100	0	52	42	19	38	0	1.51
48929067--48929112	23	2.0	23	91	0	74	47	0	4	47	1.21
48930179--48930203	10	2.5	10	100	0	50	20	28	12	40	1.87
48930306--48930357	19	2.7	20	82	11	63	53	7	0	38	1.30
48931036--48931082	23	2.0	23	87	0	67	48	0	0	51	1.00
48932985--48933069	36	2.4	36	81	13	95	60	1	0	38	1.05
48934065--48934144	41	2.0	41	83	14	103	37	1	2	58	1.19
48934058--48934136	10	7.9	10	70	16	56	35	0	3	60	1.15
48937117--48937213	33	2.8	35	72	20	89	44	3	1	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48940881--48940920	20	2.0	20	85	9	55	17	35	0	47	1.48
48943700--48943731	16	2.0	16	100	0	64	37	25	12	25	1.91
48948032--48948099	29	2.4	28	73	7	64	50	7	10	32	1.64
48948463--48948545	37	2.2	38	95	4	150	51	13	7	27	1.66
48949424--48949487	29	2.2	30	85	2	85	46	7	9	35	1.65
48951804--48952448	315	2.0	316	91	3	1057	37	13	12	36	1.82
48952531--48952558	2	14.0	2	100	0	56	50	0	0	50	1.00
48958406--48958730	27	12.0	27	94	0	533	35	22	20	21	1.96
48964834--48964880	24	2.0	24	86	0	67	12	36	34	17	1.87
48969953--48970035	43	1.9	43	85	0	112	37	7	13	42	1.72
48975709--48975749	21	2.0	21	90	0	64	19	29	21	29	1.98
48982739--48982794	29	1.9	29	85	0	76	35	8	19	35	1.83
48986641--48986677	12	2.9	13	84	8	58	10	5	5	78	1.08
48987348--48987384	3	12.0	3	88	5	56	35	2	0	62	1.10
48988308--48988520	121	1.8	116	81	11	267	29	15	20	34	1.93
48989207--48989233	2	13.5	2	100	0	54	48	0	0	51	1.00
48990995--48991021	6	4.5	6	100	0	54	85	0	0	14	0.61
48992366--48992401	5	7.2	5	100	0	72	41	0	0	58	0.98
48992642--48992681	16	2.4	17	87	8	64	62	2	0	35	1.09
49024596--49024630	17	2.1	17	94	0	61	54	5	14	25	1.62
49026229--49026258	15	1.9	16	93	6	53	0	30	0	70	0.88
49029868--49029892	12	2.1	12	100	0	50	24	36	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49030052--49030135	9	9.4	9	89	2	134	34	23	9	32	1.87
49030051--49030132	26	3.1	26	92	3	137	34	24	9	31	1.88
49030135--49030244	37	3.0	37	91	0	175	46	14	5	33	1.68
49030158--49030221	20	3.3	20	68	12	62	43	18	6	31	1.75
49030594--49030624	16	1.9	16	93	0	53	35	6	12	45	1.68
49044315--49044410	49	1.9	51	83	6	126	59	2	6	32	1.34
49046601--49046655	3	18.3	3	83	14	69	32	0	36	30	1.58
49050380--49050408	13	2.2	13	100	0	58	31	6	24	37	1.82
49053577--49053604	4	7.0	4	100	0	56	50	25	0	25	1.50
49055926--49055993	31	2.2	31	84	2	84	38	2	0	58	1.13
49055931--49056006	31	2.3	33	72	21	79	38	2	0	59	1.12
49067488--49067526	15	2.4	16	83	12	53	12	7	0	79	0.93
49067837--49067871	16	2.2	16	94	0	61	42	2	31	22	1.68
49067849--49067945	44	2.2	45	83	9	119	31	4	27	36	1.76
49068102--49068136	18	2.0	17	88	5	52	54	0	0	45	0.99
49068221--49068255	18	2.0	17	88	5	52	54	0	0	45	0.99
49068341--49068375	18	2.0	17	88	5	52	54	0	0	45	0.99
49068082--49068685	120	5.0	120	98	0	1183	49	5	0	43	1.32
49068461--49068495	18	2.0	17	88	5	52	54	0	0	45	0.99
49068581--49068615	18	2.0	17	88	5	52	54	0	0	45	0.99
49068690--49068732	16	2.8	16	92	3	70	41	16	0	41	1.48
49072778--49072815	19	2.0	19	89	0	58	81	10	5	2	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49073954--49074015	28	2.3	27	81	13	67	16	3	3	77	1.03
49073981--49074013	17	1.9	17	88	11	50	18	0	3	78	0.87
49073979--49074017	9	4.6	8	81	12	51	15	0	2	82	0.79
49073958--49074026	16	4.2	16	72	9	50	13	5	2	78	1.05
49083198--49083231	2	17.0	2	100	0	68	50	0	0	50	1.00
49083590--49083641	26	2.0	26	85	7	70	26	7	7	57	1.54
49083590--49083641	25	2.0	27	82	14	65	26	7	7	57	1.54
49085509--49085535	4	6.8	4	100	0	54	51	22	0	25	1.48
49095324--49095382	21	2.8	20	78	17	57	64	3	1	30	1.20
49095397--49095437	21	2.0	21	85	0	55	56	4	7	31	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173