genome.fa.s17.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  52  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14445900--14446215	43	7.3	43	87	0	425	18	17	32	31	1.94
14446280--14446322	22	2.0	22	90	0	68	41	25	20	11	1.86
14450347--14450396	26	1.9	26	92	8	84	38	10	14	38	1.79
14450353--14450405	25	2.1	26	82	3	63	37	11	18	32	1.87
14451779--14451809	16	1.9	16	93	0	53	54	0	3	41	1.16
14451970--14452019	24	2.1	24	100	0	100	24	16	24	36	1.94
14459328--14459385	17	3.6	16	80	15	59	37	0	3	58	1.15
14459352--14459407	25	2.2	25	84	12	71	42	0	5	51	1.24
14459398--14459513	62	1.9	59	87	5	169	41	3	4	50	1.39
14470716--14470754	18	2.1	19	86	13	55	51	10	17	20	1.74
14472529--14472560	15	2.1	15	100	0	64	18	0	25	56	1.42
14474805--14474845	21	2.0	21	85	4	57	24	21	21	31	1.98
14476749--14476948	43	4.8	42	78	10	171	28	31	17	23	1.97
14482152--14482216	29	2.2	30	81	13	82	38	36	1	23	1.64
14482154--14482249	7	13.3	7	72	13	52	37	40	2	19	1.64
14482888--14483206	41	7.9	41	85	5	409	26	29	23	19	1.98
14483267--14483393	40	3.2	40	74	11	120	22	22	22	33	1.98
14484115--14484162	13	3.6	13	78	10	53	47	0	6	45	1.27
14484104--14484162	27	2.4	23	86	11	73	47	0	5	47	1.24
14484115--14484168	27	2.1	26	83	13	67	48	1	5	44	1.37
14485054--14485159	43	2.5	43	79	3	106	24	18	25	31	1.98
14487480--14487552	27	2.7	26	79	6	74	16	10	6	65	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14490394--14490440	22	2.1	22	84	0	58	14	14	10	59	1.61
14490415--14490482	33	2.1	33	85	0	91	22	14	7	55	1.63
14490501--14490605	52	2.0	53	94	1	185	20	8	15	55	1.66
14495735--14495774	21	1.9	21	85	10	55	42	0	0	57	0.98
14498269--14498331	30	2.1	30	88	5	92	41	38	1	19	1.61
14498290--14498322	17	1.9	17	93	0	57	39	45	0	15	1.46
14498307--14498420	51	2.2	52	92	4	196	45	32	2	19	1.64
14498574--14498648	37	2.0	37	92	0	105	37	2	13	46	1.57
14498930--14498970	20	2.0	20	90	0	64	29	14	31	24	1.95
14503523--14503553	15	2.1	15	100	0	62	38	6	32	22	1.80
14507257--14507297	19	2.1	19	86	4	55	63	14	9	12	1.52
14507265--14507305	19	2.2	19	86	4	57	68	12	9	9	1.40
14518611--14518669	30	2.0	30	89	0	91	28	3	8	59	1.43
14519507--14519541	14	2.4	15	85	9	54	48	2	5	42	1.41
14529237--14529271	16	2.1	17	89	5	54	22	8	14	54	1.67
14531886--14531927	20	2.1	20	86	8	59	2	26	19	52	1.58
14535638--14535677	6	6.7	6	94	0	62	55	0	25	20	1.44
14535824--14535895	25	2.8	26	74	4	74	41	11	16	30	1.83
14542482--14542611	43	3.0	43	85	0	179	20	16	29	33	1.94
14552103--14552135	18	1.9	17	88	11	50	54	0	3	42	1.15
14553628--14553683	28	2.0	27	96	0	85	16	25	19	39	1.91
14553633--14553690	28	2.1	28	90	0	71	18	25	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14553946--14554135	51	3.7	51	74	5	150	27	24	10	37	1.88
14566271--14566299	9	3.3	9	95	4	51	34	10	24	31	1.89
14566652--14566776	54	2.3	54	83	5	146	22	19	36	22	1.95
14574058--14574105	16	3.0	16	81	6	53	12	37	25	25	1.91
14579371--14579455	25	3.4	25	79	7	86	23	20	24	31	1.98
14583612--14583677	20	3.3	20	70	8	62	15	34	16	33	1.90
14583608--14583683	40	1.9	39	89	2	116	18	32	17	31	1.94
14584907--14584961	26	2.0	29	82	10	71	32	0	20	47	1.50
14590758--14590863	52	2.0	52	98	0	203	43	14	9	33	1.77
14590893--14590977	28	3.0	28	92	0	143	37	21	23	17	1.94
14590970--14591035	20	3.3	20	72	16	64	37	16	31	13	1.88
14597886--14597944	29	2.0	29	83	6	75	54	11	0	33	1.37
14604606--14604645	21	1.9	21	85	10	55	42	2	7	47	1.45
14604617--14604661	24	2.0	23	82	8	56	40	2	4	53	1.33
14611628--14611812	101	1.8	102	86	5	268	24	15	27	32	1.95
14611620--14611810	51	3.8	52	74	10	182	24	15	27	32	1.95
14612038--14612069	16	2.0	16	93	0	55	59	0	15	25	1.36
14617382--14617566	101	1.8	102	90	3	302	23	17	28	30	1.97
14617374--14617574	51	4.0	52	79	7	225	24	16	29	29	1.97
14617792--14617823	16	2.0	16	93	0	55	59	0	15	25	1.36
14621979--14622034	14	4.3	13	74	12	53	16	7	1	75	1.11
14623430--14623499	6	11.5	6	79	1	50	15	4	7	72	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14627911--14627942	11	2.8	11	95	4	55	87	12	0	0	0.54
14627907--14627942	12	2.9	12	91	4	54	86	13	0	0	0.58
14627936--14627966	15	2.1	15	93	0	53	77	0	9	12	0.99
14634143--14634202	18	3.4	18	74	4	68	28	10	20	41	1.84
14636830--14636912	43	1.9	43	97	0	157	27	8	12	51	1.67
14638772--14638862	44	2.1	44	95	0	164	28	10	13	47	1.76
14641755--14641865	46	2.4	47	86	1	143	28	21	17	32	1.96
14641784--14641877	46	2.0	46	85	0	125	28	20	18	32	1.96
14650204--14650232	14	2.0	15	93	6	51	31	0	6	62	1.22
14653120--14669253	395	41.0	395	96	1	29851	37	12	19	30	1.88
14653120--14669253	787	20.5	790	96	1	29851	37	12	19	30	1.88
14671051--14671093	24	1.9	24	86	13	65	55	6	0	37	1.27
14677652--14677701	25	2.0	25	96	0	91	24	6	20	50	1.70
14684760--14684847	40	2.2	40	85	0	113	27	21	11	39	1.87
14684779--14684847	20	3.5	20	79	0	84	26	21	13	39	1.90
14684837--14684898	20	3.1	20	68	9	63	19	20	20	38	1.93
14689193--14689290	45	2.2	46	83	7	121	28	19	10	41	1.84
14693452--14693480	6	4.8	6	100	0	58	65	17	0	17	1.27
14693520--14693549	9	3.3	9	95	0	51	26	10	26	36	1.88
14708601--14708633	9	3.9	9	84	15	52	78	0	0	21	0.75
14708602--14708632	16	1.9	16	100	0	62	77	0	0	22	0.77
14708600--14708649	21	2.3	20	83	10	55	74	4	2	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14711603--14711644	15	2.7	16	82	14	52	52	2	0	45	1.13
14711612--14711653	15	2.9	15	82	10	52	52	0	0	47	1.00
14711722--14711773	15	3.6	15	80	12	56	53	1	0	44	1.11
14711842--14711893	15	3.6	15	80	12	56	53	1	0	44	1.11
14711962--14712013	15	3.6	15	80	12	56	53	1	0	44	1.11
14712082--14712133	15	3.6	15	80	12	56	53	1	0	44	1.11
14711606--14712258	120	5.4	120	97	0	1182	50	5	2	42	1.38
14712299--14712359	28	2.2	28	85	5	81	50	3	0	45	1.17
14712274--14712481	91	2.3	90	88	4	299	46	4	3	45	1.41
14712318--14712456	47	3.0	47	67	17	128	46	5	2	45	1.39
14713839--14713888	7	7.0	7	77	4	55	60	4	0	36	1.16
14713941--14713967	11	2.5	11	100	0	54	51	18	7	22	1.70
14716786--14716818	10	3.5	10	92	8	52	24	6	6	63	1.40
14717329--14717391	23	2.7	23	83	16	94	53	22	7	15	1.67
14721896--14722056	43	3.8	43	75	11	161	32	26	18	22	1.97
14731831--14731860	9	3.3	9	100	0	60	56	0	0	43	0.99
14734334--14734390	25	2.3	23	78	18	62	42	0	5	52	1.24
14735803--14735836	17	2.0	17	100	0	68	41	23	5	29	1.78
14735802--14735842	17	2.6	16	88	11	66	36	29	4	29	1.78
14737100--14737231	34	3.9	33	80	4	147	45	15	1	37	1.55
14755647--14755740	49	1.9	49	86	4	136	45	19	19	15	1.85
14757113--14757394	44	6.4	45	69	14	144	32	17	21	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14757045--14757489	218	2.0	218	92	0	728	32	18	22	25	1.97
14757450--14757628	90	2.0	90	89	0	277	31	20	23	24	1.98
14758149--14758525	44	8.7	44	71	8	180	31	18	22	26	1.97
14758081--14758525	218	2.0	218	91	0	719	32	18	23	26	1.97
14758486--14758662	88	2.0	88	89	0	273	31	20	23	24	1.98
14759228--14759267	17	2.4	17	87	8	55	80	5	0	15	0.88
14760966--14761009	5	9.2	5	80	9	56	15	2	0	81	0.78
14760958--14761002	15	3.1	14	84	12	56	17	6	0	75	1.01
14762340--14762369	7	4.3	7	100	0	60	43	0	0	56	0.99
14776407--14776446	21	2.0	20	85	14	55	45	2	7	45	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173