genome.fa.s17.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  37  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10029650--10029683	14	2.3	15	90	5	52	41	8	0	50	1.34
10031490--10031619	67	1.9	67	87	3	190	36	22	16	25	1.94
10031854--10031903	25	2.0	26	92	4	84	20	10	6	64	1.45
10037775--10037800	10	2.6	10	100	0	52	23	0	34	42	1.54
10054748--10054802	22	2.4	23	84	3	76	30	9	18	41	1.81
10054761--10054804	23	2.0	21	87	12	63	34	11	18	36	1.86
10062589--10062632	16	2.5	18	78	17	56	29	38	15	15	1.89
10066893--10066990	25	4.0	25	70	10	76	30	15	28	25	1.96
10075043--10075084	17	2.5	17	80	7	50	35	0	2	61	1.09
10075032--10075098	20	3.5	19	75	19	68	37	0	1	61	1.05
10075429--10075473	24	1.9	24	86	4	65	17	8	40	33	1.81
10075515--10075769	124	2.1	124	87	3	361	29	15	22	32	1.95
10077478--10077813	85	3.9	85	89	4	537	31	0	21	47	1.54
10077478--10077816	176	1.9	176	94	0	597	31	0	21	47	1.54
10077454--10077823	28	12.8	28	84	5	407	32	0	20	46	1.53
10077809--10077843	17	2.0	18	88	5	54	31	0	20	48	1.50
10077752--10077855	23	4.3	23	73	14	75	31	0	20	47	1.57
10080227--10080268	22	1.9	22	90	0	66	33	0	33	33	1.58
10080270--10080339	22	3.2	23	82	8	92	45	0	24	30	1.53
10080218--10080320	52	2.0	51	81	9	120	36	0	30	33	1.58
10089337--10089414	36	2.2	36	92	0	129	52	25	8	12	1.68
10102358--10102384	8	3.4	8	100	0	54	25	11	22	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10107056--10107083	9	3.1	9	100	0	56	57	10	0	32	1.33
10107026--10107235	68	3.1	68	97	1	388	45	9	4	40	1.57
10107124--10107151	9	3.1	9	100	0	56	57	10	0	32	1.33
10107224--10107265	16	2.6	16	92	0	66	42	7	2	47	1.43
10107239--10107300	23	2.7	23	82	2	72	48	1	1	48	1.21
10110804--10110840	5	7.2	5	93	6	65	21	2	0	75	0.92
10131726--10131913	45	4.2	45	81	6	186	34	27	16	21	1.95
10131732--10131913	90	2.0	88	82	4	213	34	28	16	21	1.95
10133322--10133366	6	7.3	6	90	5	72	66	2	17	13	1.34
10133468--10133694	113	2.0	114	91	1	366	44	7	14	32	1.75
10134831--10135130	163	1.8	163	84	2	415	26	19	14	39	1.90
10150068--10150120	23	2.4	22	76	20	56	9	18	1	69	1.25
10152778--10153145	185	2.0	186	90	0	585	30	19	23	26	1.98
10153932--10153973	22	2.1	19	86	13	57	45	2	0	52	1.13
10154490--10154531	21	2.0	20	86	13	59	21	50	9	19	1.75
10154947--10154971	3	8.3	3	100	0	50	68	0	32	0	0.90
10157127--10157171	22	2.0	23	87	8	67	37	2	0	60	1.09
10157126--10157171	16	2.9	16	84	12	51	39	2	0	58	1.10
10158528--10158552	5	5.0	5	100	0	50	20	0	0	80	0.72
10161538--10161569	17	1.9	16	93	6	55	21	18	31	28	1.97
10165692--10165838	73	2.0	73	97	0	276	34	7	25	32	1.84
10168464--10168497	18	2.0	18	88	11	54	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10169014--10169055	21	2.0	22	85	4	59	21	0	38	40	1.53
10169088--10169501	222	1.9	220	87	2	605	35	10	10	43	1.73
10169725--10169794	30	2.5	26	80	11	77	51	1	11	35	1.47
10169744--10169794	26	1.9	26	84	4	66	54	0	7	37	1.29
10174113--10174162	6	8.3	6	86	0	73	38	0	44	18	1.50
10175496--10175621	41	3.1	41	88	0	189	23	28	20	27	1.99
10175737--10175917	64	2.9	63	89	6	253	40	17	8	33	1.80
10179703--10179738	18	2.0	18	88	0	54	19	33	0	47	1.50
10183789--10183853	10	6.9	9	75	18	53	70	3	1	24	1.10
10183818--10183884	22	3.1	21	78	6	64	68	2	2	25	1.18
10183818--10183875	11	5.5	11	75	6	57	68	1	3	25	1.14
10184167--10184283	27	4.3	27	65	13	69	33	1	2	62	1.19
10184237--10184289	17	3.1	17	76	13	54	22	3	3	69	1.20
10196437--10196462	2	13.0	2	100	0	52	0	0	50	50	1.00
10197776--10197886	27	4.1	27	76	2	89	32	14	28	24	1.94
10200657--10200747	45	2.0	45	91	0	146	31	23	17	27	1.97
10200749--10200887	51	2.7	50	80	3	161	33	28	15	23	1.95
10214477--10214638	76	2.1	76	80	4	193	24	27	19	28	1.99
10216712--10216896	101	1.8	102	90	3	302	24	16	26	32	1.96
10216704--10216898	51	3.8	52	81	9	242	24	15	27	32	1.96
10216717--10216901	102	1.8	101	89	3	273	24	16	26	32	1.96
10217061--10217126	33	2.0	33	100	0	132	33	3	21	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10217155--10217186	16	2.0	16	93	0	55	59	0	15	25	1.36
10235143--10235181	20	2.1	19	90	9	62	64	0	0	35	0.94
10235119--10235230	10	11.5	10	63	16	56	65	2	1	30	1.17
10235215--10235262	25	2.0	24	87	4	69	60	2	0	37	1.09
10235261--10235309	25	2.0	24	92	4	80	55	2	0	42	1.11
10243435--10243467	15	2.1	17	88	11	52	36	6	39	18	1.75
10260198--10260233	16	2.2	16	90	9	56	55	2	0	41	1.14
10269642--10269689	25	1.9	25	86	0	69	33	14	16	35	1.89
10278129--10278244	57	2.0	59	86	10	166	30	23	22	24	1.99
10278296--10278427	67	2.0	67	95	0	237	19	19	33	27	1.96
10297205--10297258	28	1.9	28	85	7	74	37	20	9	33	1.84
10302508--10302561	27	2.0	27	81	0	63	42	9	7	40	1.65
10309023--10309067	2	23.0	2	81	4	56	2	46	0	51	1.13
10310383--10310408	5	5.2	5	100	0	52	38	19	0	42	1.51
10311030--10311164	66	2.0	66	100	0	270	22	18	26	32	1.97
10315449--10315494	4	11.5	4	100	0	92	50	23	0	26	1.50
10323988--10324026	13	3.0	13	89	10	62	25	0	0	74	0.82
10323989--10324021	16	2.1	16	94	0	57	27	0	0	72	0.85
10326909--10327027	57	2.1	58	91	1	195	45	6	21	26	1.76
10329530--10329897	184	2.0	184	95	1	657	33	12	14	38	1.84
10330058--10330094	6	6.2	6	100	0	74	67	16	0	16	1.23
10331309--10331351	19	2.2	20	80	12	54	32	18	2	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10332543--10332776	41	5.7	41	92	1	378	22	28	21	27	1.99
10335011--10335099	45	2.0	45	86	4	126	39	20	19	21	1.93
10340917--10340981	31	2.1	30	83	8	78	56	4	0	38	1.20
10344495--10344532	14	2.7	14	92	8	60	42	7	13	36	1.73
10346959--10347058	48	2.1	48	100	0	200	35	11	12	42	1.77
10347150--10347211	30	2.1	30	100	0	124	35	6	19	38	1.77
10350798--10350848	24	2.1	24	88	0	75	37	3	9	49	1.55
10352720--10352801	9	10.0	8	83	10	71	25	2	1	70	1.06
10352745--10352801	3	18.7	3	85	10	80	31	1	0	66	1.02
10352895--10353018	52	2.4	50	79	10	119	38	9	2	49	1.49
10353013--10353068	26	2.1	27	83	3	69	41	8	1	48	1.45
10360235--10360282	14	3.9	14	70	30	54	37	6	0	56	1.25
10360238--10360305	22	3.0	23	81	12	88	38	7	0	54	1.28
10360223--10360293	22	3.0	24	82	12	85	36	8	0	54	1.31
10360403--10360458	30	1.9	30	88	3	87	32	12	1	53	1.49
10361793--10362109	132	2.4	131	87	1	438	29	20	23	27	1.99
10361924--10362548	219	2.8	220	91	0	1002	28	20	24	25	1.99
10362367--10362680	132	2.4	132	91	2	497	28	21	24	25	1.99
10362144--10362990	352	2.4	351	91	1	1344	28	20	24	25	1.99
10362715--10362990	131	2.1	131	91	1	437	28	20	24	27	1.99
10362764--10363053	44	6.7	43	69	13	119	28	20	24	26	1.99
10361797--10362947	571	2.0	570	89	2	1765	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10362753--10363019	131	2.0	131	87	1	383	29	19	25	25	1.98
10362782--10363181	131	3.1	131	80	8	358	29	19	24	26	1.99
10363017--10363661	44	15.1	42	67	16	263	32	20	20	26	1.98
10363157--10363657	85	5.9	81	71	14	280	31	21	20	25	1.98
10362980--10363665	129	5.3	129	89	1	921	32	20	20	25	1.98
10364872--10365137	103	2.6	104	90	3	419	19	20	29	29	1.97
10372361--10372626	103	2.6	104	91	0	426	19	20	30	29	1.97
10374079--10374191	44	2.6	44	84	0	145	30	23	19	27	1.98
10375845--10375892	24	2.0	25	87	4	71	41	12	4	41	1.62
10376022--10376077	26	2.1	27	83	3	69	41	8	1	48	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173