genome.fa.s17.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Length:  52479919

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   

This is table  138  of  173  ( 20651 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41902454--41902497	19	2.3	19	84	7	54	50	6	18	25	1.71
41903600--41903760	40	4.0	40	85	0	205	35	15	29	19	1.93
41906859--41906883	5	5.0	5	100	0	50	40	0	20	40	1.52
41908024--41908112	20	4.4	20	75	9	83	13	28	19	39	1.89
41909067--41909120	20	2.7	20	88	2	72	44	16	9	29	1.79
41911811--41912042	43	5.5	41	72	9	173	23	15	25	34	1.95
41911850--41912050	85	2.4	84	88	1	276	22	17	24	34	1.96
41917950--41918047	51	1.9	51	93	0	169	16	14	26	42	1.86
41924488--41924628	40	3.5	40	85	2	185	43	17	21	16	1.87
41924713--41924756	21	2.1	21	87	8	63	34	34	0	31	1.58
41935407--41935450	22	2.0	22	82	8	54	27	2	11	59	1.44
41935858--41935936	31	2.5	31	97	0	149	40	6	22	30	1.79
41941448--41941517	9	8.0	9	82	9	74	47	18	0	34	1.49
41943087--41943258	43	4.0	43	83	0	218	22	15	31	30	1.95
41944650--41944683	17	1.9	18	88	5	52	8	5	32	52	1.56
41945291--41945329	21	1.9	19	85	10	51	71	2	2	23	1.10
41945616--41945654	20	2.0	20	85	10	53	61	0	0	38	0.96
41949602--41949683	33	2.6	31	76	14	87	35	4	3	56	1.39
41949765--41949791	13	2.1	13	100	0	54	66	0	0	33	0.92
41950955--41950993	18	2.0	20	90	9	64	15	0	7	76	0.99
41955345--41955371	11	2.5	11	100	0	54	33	0	11	55	1.35
41958238--41958286	20	2.5	20	86	0	71	18	44	18	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41962610--41962669	30	2.0	30	86	0	84	13	26	36	23	1.92
41967065--41967104	19	2.1	19	100	0	80	22	17	5	55	1.61
41970813--41970943	62	2.1	63	80	4	149	22	28	25	23	2.00
41971542--41971596	27	1.9	28	89	10	85	78	1	16	3	0.98
41971551--41971607	20	2.9	19	80	15	62	78	0	19	1	0.83
41972613--41972652	18	2.2	19	86	13	57	50	7	0	42	1.30
41975463--41975660	51	3.9	51	78	6	222	24	14	28	31	1.95
41977718--41977791	31	2.3	32	77	13	82	67	10	1	20	1.28
41987126--41987200	31	2.3	32	77	11	82	68	10	1	20	1.27
41987407--41987453	18	2.4	19	79	10	51	10	51	2	36	1.49
41990027--41990318	50	5.7	50	81	3	282	26	21	28	22	1.99
41992011--41992042	17	1.9	17	93	6	57	71	3	0	25	1.00
41993334--41993380	10	4.6	10	77	12	51	27	0	4	68	1.08
41994213--41994266	19	2.8	19	85	0	81	33	9	16	40	1.80
41994473--41994517	23	2.0	23	81	0	54	22	0	15	62	1.33
41994734--41994777	3	14.7	3	80	0	52	25	0	2	72	0.96
42000689--42000759	25	2.8	25	75	14	74	35	16	23	23	1.95
42002498--42002645	54	2.7	54	84	2	181	35	10	27	27	1.89
42004289--42004323	12	2.7	13	91	8	54	37	8	17	37	1.80
42011885--42011928	19	2.3	19	88	4	61	40	0	0	59	0.98
42017010--42017187	27	6.6	27	81	3	169	28	27	15	28	1.96
42017010--42017186	54	3.3	54	79	9	189	28	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42042144--42042305	73	2.2	73	88	2	245	28	17	19	34	1.95
42053483--42053524	20	2.2	19	83	8	57	61	2	11	23	1.42
42059282--42059371	40	2.2	40	78	3	101	34	23	26	15	1.95
42059390--42059498	20	5.4	20	66	8	60	33	18	31	17	1.94
42059387--42059509	40	3.1	40	89	2	185	33	17	30	18	1.95
42059283--42059479	108	1.8	108	80	2	234	33	18	28	19	1.96
42062457--42062499	21	2.0	21	86	13	61	37	23	0	39	1.55
42104653--42104694	20	2.0	22	86	9	61	40	4	0	54	1.21
42105060--42105188	67	1.9	67	88	3	197	20	24	6	48	1.73
42111879--42112005	66	1.9	66	88	3	193	23	20	33	22	1.97
42111945--42112163	50	4.4	50	85	0	267	26	21	30	22	1.99
42119462--42119804	50	6.8	50	86	1	445	25	21	30	21	1.98
42124007--42124038	6	5.3	6	100	0	64	0	18	0	81	0.70
42128273--42128367	19	5.0	19	76	10	86	75	10	5	8	1.17
42128306--42128366	19	3.0	20	85	9	88	75	14	1	8	1.11
42131732--42131791	31	1.9	32	83	10	79	70	1	25	3	1.12
42131786--42131845	26	2.3	26	81	16	72	68	0	26	5	1.10
42139768--42139831	18	3.7	18	68	16	62	48	10	1	39	1.48
42150422--42150473	25	2.0	25	85	3	68	61	7	11	19	1.53
42150489--42150540	5	10.4	5	100	0	104	42	38	0	19	1.51
42156714--42156754	19	2.2	19	95	0	73	51	17	12	19	1.76
42158622--42158655	13	2.6	13	100	0	68	41	14	23	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42162915--42162999	21	4.0	21	69	6	71	45	18	21	14	1.84
42162930--42163042	42	2.6	42	87	2	154	46	17	20	15	1.83
42164927--42164970	2	22.0	2	100	0	88	50	50	0	0	1.00
42166785--42167005	107	2.1	107	82	5	261	28	21	23	26	1.99
42168775--42169284	253	2.0	253	96	0	932	27	15	20	36	1.93
42172272--42172388	32	3.8	29	73	11	99	39	16	10	34	1.82
42178381--42178416	17	2.1	18	89	5	56	66	11	2	19	1.35
42179163--42179197	3	11.7	3	87	0	52	62	2	2	31	1.24
42180544--42180644	51	2.0	51	82	3	123	31	21	13	32	1.93
42180678--42181050	123	3.0	121	76	9	349	26	24	17	31	1.97
42180839--42180987	79	1.9	79	87	0	217	24	24	18	31	1.98
42180919--42181506	51	12.1	47	73	10	305	29	22	17	31	1.96
42180919--42181510	97	6.1	97	86	2	749	29	22	17	31	1.96
42180919--42181510	291	2.0	291	86	1	837	29	22	17	31	1.96
42181821--42181878	24	2.4	24	88	0	89	32	24	8	34	1.86
42187238--42187307	34	2.1	34	97	0	131	25	20	20	34	1.96
42199997--42200071	25	2.6	28	80	20	93	58	1	25	14	1.44
42200003--42200064	25	2.4	25	97	2	115	54	0	27	17	1.43
42202960--42202988	15	1.9	15	100	0	58	62	6	6	24	1.45
42208767--42208815	19	2.5	20	75	15	50	20	48	0	30	1.50
42211184--42211349	82	2.0	82	95	0	296	46	13	6	33	1.68
42219131--42219161	15	2.1	15	93	0	53	19	70	0	9	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42221480--42221640	77	2.1	77	98	0	313	33	8	15	42	1.78
42222609--42222646	11	3.5	11	100	0	76	47	26	0	26	1.52
42225673--42225881	92	2.3	91	85	5	260	45	4	4	45	1.42
42225809--42225856	26	1.9	25	84	16	64	45	0	2	52	1.12
42225935--42226372	66	7.2	63	66	23	278	42	2	6	48	1.42
42226022--42226073	15	3.6	15	80	12	56	44	0	1	53	1.11
42226141--42226312	15	11.6	15	64	18	58	42	1	4	51	1.33
42225897--42226427	120	4.4	120	96	1	944	43	2	5	48	1.39
42225897--42226432	239	2.2	240	94	3	945	43	2	5	48	1.39
42226390--42226421	15	2.1	15	94	0	55	50	0	0	50	1.00
42225900--42226510	239	2.6	236	86	7	702	44	3	5	47	1.40
42226365--42226676	153	2.0	155	90	5	499	46	5	4	43	1.45
42226799--42226834	16	2.2	16	95	0	63	38	33	0	27	1.57
42227895--42228038	71	2.0	71	98	0	279	30	23	13	32	1.93
42239841--42239892	24	2.2	24	89	0	77	55	9	1	32	1.43
42241809--42241860	24	2.2	24	92	0	86	55	7	1	34	1.39
42243826--42243936	51	2.2	51	81	3	125	41	15	4	38	1.67
42243935--42243993	27	2.0	30	84	15	79	59	5	1	33	1.29
42243974--42244064	6	15.2	6	79	14	91	56	0	0	43	0.99
42243991--42244064	19	4.7	15	77	22	64	54	0	0	45	1.00
42245418--42245451	15	2.4	14	85	9	50	73	0	0	26	0.83
42249366--42249404	19	2.0	20	90	5	62	61	0	38	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42249593--42249635	20	2.1	20	86	4	59	16	0	18	65	1.28
42260085--42260133	19	2.5	20	80	6	64	18	12	8	61	1.55
42262003--42262231	110	2.1	110	97	0	431	29	11	16	41	1.84
42273453--42273736	44	6.4	45	75	6	229	30	16	22	29	1.96
42273617--42274486	44	19.9	44	79	6	919	33	12	21	33	1.90
42273532--42274478	88	10.8	88	88	3	1162	33	12	21	32	1.91
42273923--42273994	36	2.0	36	88	0	108	38	11	18	31	1.85
42274180--42274346	45	3.7	45	78	6	205	28	13	25	32	1.94
42276343--42276397	16	3.5	15	75	22	51	38	7	0	54	1.28
42278055--42278181	20	6.4	19	69	8	67	22	14	11	52	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173